SRR1546358_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546358_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2130220
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10240	0.4807015237862756	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3745	0.17580343814253926	No Hit
GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	2867	0.1345870379585207	No Hit
GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	2588	0.12148979917567199	No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	2404	0.11285219367013735	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAGTCG	30	2.1663782E-6	45.000004	1
CACTACG	20	7.034643E-4	45.000004	25
TATTACG	20	7.034643E-4	45.000004	1
GACGATA	20	7.034643E-4	45.000004	45
TCGAATA	20	7.034643E-4	45.000004	26
CGTATCG	25	3.8919316E-5	45.0	13
CGTTTTT	7320	0.0	42.786884	1
AAGTACG	125	0.0	41.399998	1
CGCATCG	145	0.0	40.344826	21
CGACGGT	475	0.0	40.263157	28
TATAGCG	140	0.0	40.17857	1
TCACGAC	490	0.0	39.94898	25
CGTAAGG	365	0.0	39.452053	2
GTATGCG	160	0.0	39.375004	1
ACGTCGT	40	3.4600816E-7	39.375004	42
TATCGCG	75	0.0	39.0	1
TTATACG	105	0.0	38.57143	1
TAATGCG	70	0.0	38.571426	1
GTACAAG	935	0.0	38.502674	1
TAACGCC	205	0.0	38.414635	12