##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546358_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2130220 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.11716911868258 31.0 31.0 33.0 30.0 34.0 2 31.44590699552159 31.0 31.0 34.0 30.0 34.0 3 31.52578513017435 31.0 31.0 34.0 30.0 34.0 4 35.383857535841365 37.0 35.0 37.0 33.0 37.0 5 35.28893353738111 37.0 35.0 37.0 33.0 37.0 6 35.33474946249683 37.0 35.0 37.0 33.0 37.0 7 35.77887119640225 37.0 35.0 37.0 35.0 37.0 8 35.68580756917126 37.0 35.0 37.0 35.0 37.0 9 37.44100374609195 39.0 37.0 39.0 35.0 39.0 10 36.89459586333806 39.0 37.0 39.0 32.0 39.0 11 36.61176639032588 39.0 35.0 39.0 32.0 39.0 12 35.99748335852635 37.0 35.0 39.0 32.0 39.0 13 35.7083596999371 37.0 35.0 39.0 31.0 39.0 14 36.52286712170574 38.0 35.0 41.0 31.0 41.0 15 36.789246650580694 38.0 35.0 41.0 31.0 41.0 16 36.89370065063702 38.0 35.0 41.0 31.0 41.0 17 36.838575827848764 38.0 35.0 41.0 31.0 41.0 18 36.76237947254274 38.0 35.0 40.0 31.0 41.0 19 36.69310963186901 38.0 35.0 40.0 31.0 41.0 20 36.526029236416896 38.0 35.0 40.0 31.0 41.0 21 36.36510407375764 38.0 35.0 40.0 31.0 41.0 22 36.301649594877524 38.0 35.0 40.0 30.0 41.0 23 36.26080921219405 38.0 35.0 40.0 30.0 41.0 24 36.25050323440772 38.0 35.0 40.0 30.0 41.0 25 36.18108927716386 38.0 35.0 40.0 30.0 41.0 26 36.07118372750232 38.0 35.0 40.0 30.0 41.0 27 35.96809015031312 38.0 34.0 40.0 30.0 41.0 28 35.91153120334989 38.0 34.0 40.0 30.0 41.0 29 35.79561735407611 37.0 34.0 40.0 30.0 41.0 30 35.636776013745056 37.0 34.0 40.0 29.0 41.0 31 35.39832740280347 37.0 34.0 40.0 28.0 41.0 32 35.22764972631935 37.0 34.0 40.0 27.0 41.0 33 35.046364225291285 37.0 34.0 40.0 26.0 41.0 34 34.811622743190846 37.0 34.0 40.0 25.0 41.0 35 34.57833604040897 37.0 33.0 40.0 24.0 41.0 36 34.405139375275795 37.0 33.0 40.0 23.0 41.0 37 34.2258663424435 36.0 33.0 40.0 23.0 41.0 38 34.12136633774915 36.0 33.0 40.0 23.0 41.0 39 34.04907427401864 36.0 33.0 40.0 23.0 41.0 40 33.83675911408211 36.0 33.0 40.0 22.0 41.0 41 33.7273281632883 36.0 33.0 40.0 22.0 41.0 42 33.63112870971074 36.0 32.0 40.0 22.0 41.0 43 33.5894245664767 35.0 32.0 40.0 22.0 41.0 44 33.4259053055553 35.0 32.0 40.0 22.0 41.0 45 33.36375210072199 35.0 32.0 40.0 22.0 41.0 46 33.302730703870964 35.0 32.0 39.0 22.0 41.0 47 33.21908112777084 35.0 32.0 39.0 21.0 41.0 48 33.120860286730945 35.0 32.0 39.0 20.0 41.0 49 33.129917567199634 35.0 32.0 39.0 21.0 41.0 50 32.96922571377604 35.0 32.0 39.0 20.0 41.0 51 32.75757245730488 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 4.0 13 14.0 14 28.0 15 110.0 16 251.0 17 672.0 18 1605.0 19 2899.0 20 4890.0 21 7877.0 22 11564.0 23 16602.0 24 22936.0 25 31460.0 26 40715.0 27 46927.0 28 51244.0 29 56717.0 30 65665.0 31 78840.0 32 96350.0 33 122474.0 34 194353.0 35 243512.0 36 166517.0 37 210539.0 38 287184.0 39 368227.0 40 39.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.23245486381688 22.719202711457033 28.241965618574604 12.806376806151476 2 33.93269239796828 24.023903634366402 29.37480635802875 12.668597609636564 3 30.740533841575047 24.627174658016543 30.89572907962558 13.73656242078283 4 26.947967815530788 27.02354686370422 30.642797457539594 15.385687863225394 5 22.40853057430688 32.54316455577358 30.074264629944324 14.974040239975213 6 20.44685525438687 41.40882162405761 27.89913717831961 10.24518594323591 7 86.94519814854804 4.130981776530124 7.07128841152557 1.8525316633962687 8 87.98748486071861 3.0402024204072817 6.842626583169814 2.1296861357042935 9 83.7723333740177 4.457802480494973 8.62530630639089 3.1445578390964313 10 46.20771563500484 24.711391311695504 15.321328313507527 13.759564739792134 11 38.56320004506576 23.331346058153617 21.827557717043312 16.277896179737304 12 34.92873975457934 21.58551698885561 27.478382514482075 16.007360742082977 13 26.088150519664637 29.31443700650637 28.157795908403827 16.439616565425165 14 20.1208795335693 32.90800950136605 30.131019331336667 16.840091633727972 15 17.986592934063147 23.63154979297913 41.06026607580438 17.321591197153346 16 21.82427167147055 19.32565650496193 38.50203265390429 20.348039169663227 17 21.92294692566965 19.57398766324605 29.339504839875698 29.163560571208606 18 24.63229150040841 22.48913257785581 31.950502764972633 20.92807315676315 19 29.150181671376664 25.318136154951134 25.559613561040646 19.97206861263156 20 29.58858709429073 24.669329928364206 24.09342696998432 21.648656007360742 21 24.9550281191614 25.98041516838636 28.603712292627055 20.460844419825182 22 23.78486729070237 22.61066932053966 27.24939208156904 26.355071307188926 23 21.52214325280957 27.67052229347204 26.76249401470271 24.044840439015687 24 22.579874379172104 25.413196759020195 31.863845048868196 20.14308381293951 25 23.463961468768485 23.71867694416539 29.7434067842758 23.073954802790322 26 20.31100074170743 27.318774586662407 27.200617776567675 25.16960689506248 27 20.203030672888246 27.11940550741238 29.436161523222953 23.241402296476423 28 19.500004694350817 26.057402521805262 32.79543896874501 21.64715381509891 29 20.043892180150408 25.789965355690963 32.188083859883015 21.978058604275617 30 23.802236388729803 25.308888283839227 30.167212776145185 20.72166255128578 31 29.11671095004272 23.76576128287219 25.892912469134643 21.224615297950447 32 28.830026945573696 24.81898583244923 25.402916130728283 20.948071091248792 33 27.600435635755932 23.812563960529896 26.354320211058013 22.232680192656158 34 22.534761667808958 24.957844729652336 29.271014261437784 23.236379341100918 35 21.787702678596577 25.444508078977755 29.946343570147683 22.82144567227798 36 29.760259503713232 24.74256180112852 25.891269446348264 19.605909248809983 37 23.113575123696144 29.3550900845922 26.573546394269137 20.957788397442517 38 23.850353484616612 29.771150397611514 23.871055571724987 22.507440546046887 39 22.250941217339054 27.169259513101935 25.93849461557961 24.6413046539794 40 24.73711635417938 24.106148660701713 27.071992564148307 24.084742420970603 41 21.33282008431054 22.775300203734826 27.647566917970913 28.244312793983724 42 22.679019068453023 25.04689656467407 25.674202664513523 26.59988170235938 43 22.392006459426725 25.405075532104664 26.34633981466703 25.856578193801578 44 22.492230849395835 25.87422895287811 28.072311780003943 23.561228417722113 45 21.419853348480437 28.577330041028624 25.938729333120524 24.06408727737041 46 23.34618020673921 27.561754185013754 27.30642844401048 21.785637164236558 47 22.40294429683319 26.47627944531551 27.824684774342558 23.296091483508746 48 22.35816019002732 25.748561181474216 29.030522669020105 22.862755959478363 49 22.789383256189502 23.7234182384918 30.156227995230537 23.330970510088157 50 21.81901399855414 26.964069438837303 28.770127029133143 22.446789533475417 51 21.772399094929163 28.521701983832653 26.520406343006826 23.185492578231358 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 799.0 1 1752.5 2 2706.0 3 10832.0 4 18958.0 5 13754.5 6 8551.0 7 8624.0 8 8697.0 9 8806.0 10 8915.0 11 8908.5 12 8902.0 13 8670.5 14 8439.0 15 8101.5 16 7764.0 17 7407.5 18 7051.0 19 6771.5 20 6492.0 21 6831.5 22 7171.0 23 7607.5 24 8044.0 25 9106.0 26 11581.5 27 12995.0 28 15606.5 29 18218.0 30 22472.0 31 26726.0 32 31119.0 33 35512.0 34 40366.5 35 45221.0 36 50986.5 37 56752.0 38 61609.5 39 66467.0 40 86759.5 41 107052.0 42 124227.5 43 141403.0 44 148286.5 45 155170.0 46 162704.5 47 170239.0 48 169688.0 49 169137.0 50 168194.5 51 167252.0 52 156629.0 53 146006.0 54 136829.0 55 127652.0 56 126635.0 57 125618.0 58 119456.5 59 113295.0 60 104089.0 61 94883.0 62 85429.0 63 75975.0 64 66259.0 65 56543.0 66 47420.5 67 38298.0 68 32177.5 69 26057.0 70 22021.0 71 17985.0 72 14230.5 73 10476.0 74 8325.0 75 4575.5 76 2977.0 77 2291.5 78 1606.0 79 1293.5 80 981.0 81 748.0 82 515.0 83 343.5 84 172.0 85 127.5 86 83.0 87 74.5 88 66.0 89 53.0 90 40.0 91 27.0 92 14.0 93 8.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2130220.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.934563971094647 #Duplication Level Percentage of deduplicated Percentage of total 1 80.05528363760742 16.75922456535619 2 6.854634409174533 2.8699756507466163 3 2.3729330115642844 1.4902895378914438 4 1.294831712420746 1.0842694926189653 5 0.9091389116809799 0.9516213352598422 6 0.6606216314135602 0.8297895482109652 7 0.5138536106198852 0.7530110898309963 8 0.448444035635007 0.7510384281165522 9 0.35789926231322966 0.6743218501893501 >10 4.17165016820362 20.039308046922496 >50 1.326021378646937 19.97917990097251 >100 1.0234269311720157 30.940118322497685 >500 0.006982005719654407 0.9492725436545927 >1k 0.004054067837218688 1.4457628771708526 >5k 0.0 0.0 >10k+ 2.2522599095659381E-4 0.4828168105609213 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10240 0.4807015237862756 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3745 0.17580343814253926 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2867 0.1345870379585207 No Hit GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 2588 0.12148979917567199 No Hit GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2404 0.11285219367013735 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.6943508182253474E-5 0.0 0.0 0.07515655659978782 0.0 2 4.6943508182253474E-5 0.0 0.0 0.22992930307667753 0.0 3 4.6943508182253474E-5 0.0 0.0 0.3189811380984124 0.0 4 4.6943508182253474E-5 0.0 0.0 0.452441531860559 0.0 5 4.6943508182253474E-5 0.0 0.0 0.7329759367577058 0.0 6 4.6943508182253474E-5 0.0 0.0 1.017078048276704 0.0 7 4.6943508182253474E-5 0.0 0.0 1.2057440076611805 0.0 8 4.6943508182253474E-5 0.0 0.0 1.7557341495244623 0.0 9 4.6943508182253474E-5 0.0 0.0 2.0150970322314126 0.0 10 4.6943508182253474E-5 0.0 0.0 2.4450995671808546 0.0 11 4.6943508182253474E-5 0.0 0.0 2.760747716198327 0.0 12 4.6943508182253474E-5 0.0 0.0 3.0597309198110993 0.0 13 4.6943508182253474E-5 0.0 0.0 3.1759161025621765 0.0 14 4.6943508182253474E-5 0.0 0.0 3.2218268535644206 0.0 15 4.6943508182253474E-5 0.0 0.0 3.2869374994132063 0.0 16 4.6943508182253474E-5 0.0 0.0 3.4412408108082735 0.0 17 4.6943508182253474E-5 0.0 0.0 3.6166687008853544 0.0 18 4.6943508182253474E-5 0.0 0.0 3.8990808461097917 0.0 19 9.388701636450695E-5 0.0 0.0 4.007003971420792 0.0 20 1.4083052454676043E-4 0.0 0.0 4.144689280919342 0.0 21 1.4083052454676043E-4 0.0 0.0 4.296410699364385 0.0 22 1.4083052454676043E-4 0.0 0.0 4.449305705513985 0.0 23 1.4083052454676043E-4 0.0 0.0 4.625203030672888 0.0 24 1.4083052454676043E-4 0.0 0.0 4.756926514632291 0.0 25 1.4083052454676043E-4 0.0 0.0 4.863582165222371 0.0 26 1.4083052454676043E-4 0.0 0.0 4.972444160697017 0.0 27 1.4083052454676043E-4 0.0 0.0 5.104449305705514 0.0 28 1.4083052454676043E-4 0.0 0.0 5.224389969111171 0.0 29 1.4083052454676043E-4 0.0 0.0 5.3719334153279945 0.0 30 1.4083052454676043E-4 0.0 0.0 5.5528536958623995 0.0 31 1.4083052454676043E-4 0.0 0.0 5.695702791260996 0.0 32 1.4083052454676043E-4 0.0 0.0 5.83700275088958 0.0 33 1.877740327290139E-4 0.0 0.0 5.98698725953188 0.0 34 1.877740327290139E-4 0.0 0.0 6.151289538169767 0.0 35 1.877740327290139E-4 0.0 0.0 6.3456356620442955 0.0 36 1.877740327290139E-4 0.0 0.0 6.492334125113838 0.0 37 1.877740327290139E-4 0.0 0.0 6.641426707100675 0.0 38 1.877740327290139E-4 0.0 0.0 6.839481368121603 0.0 39 1.877740327290139E-4 0.0 0.0 7.1900085437184895 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAAGTCG 30 2.1663782E-6 45.000004 1 CACTACG 20 7.034643E-4 45.000004 25 TATTACG 20 7.034643E-4 45.000004 1 GACGATA 20 7.034643E-4 45.000004 45 TCGAATA 20 7.034643E-4 45.000004 26 CGTATCG 25 3.8919316E-5 45.0 13 CGTTTTT 7320 0.0 42.786884 1 AAGTACG 125 0.0 41.399998 1 CGCATCG 145 0.0 40.344826 21 CGACGGT 475 0.0 40.263157 28 TATAGCG 140 0.0 40.17857 1 TCACGAC 490 0.0 39.94898 25 CGTAAGG 365 0.0 39.452053 2 GTATGCG 160 0.0 39.375004 1 ACGTCGT 40 3.4600816E-7 39.375004 42 TATCGCG 75 0.0 39.0 1 TTATACG 105 0.0 38.57143 1 TAATGCG 70 0.0 38.571426 1 GTACAAG 935 0.0 38.502674 1 TAACGCC 205 0.0 38.414635 12 >>END_MODULE