SRR1546357_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546357_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1852560
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9761	0.5268925163017661	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6246	0.33715507190050525	No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	3217	0.17365159562983115	No Hit
GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	2606	0.14067020771257072	No Hit
GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1946	0.10504383123893424	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	50	2.1827873E-11	45.0	1
CCTTACG	25	3.891733E-5	45.0	1
TACCCGA	20	7.0344063E-4	45.0	43
AAATCCG	20	7.0344063E-4	45.0	32
CTCGTTA	25	3.891733E-5	45.0	35
CGTATTA	35	1.2124656E-7	45.0	44
CGTGATA	20	7.0344063E-4	45.0	44
CTATACG	20	7.0344063E-4	45.0	1
GCTATCG	25	3.891733E-5	45.0	27
CCTCGTA	25	3.891733E-5	45.0	14
CGTTACA	20	7.0344063E-4	45.0	40
CTAACGG	55	1.8189894E-12	45.0	2
CTACGCA	25	3.891733E-5	45.0	1
ACTACGT	20	7.0344063E-4	45.0	13
CATACCG	20	7.0344063E-4	45.0	39
CGTAAAT	80	0.0	45.0	16
ATCGGAT	25	3.891733E-5	45.0	34
CGACTAA	20	7.0344063E-4	45.0	35
TATCGGC	25	3.891733E-5	45.0	29
AATGTCG	20	7.0344063E-4	45.0	1