##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546357_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1852560 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.131438657857235 31.0 31.0 33.0 30.0 34.0 2 31.451699270199075 31.0 31.0 34.0 30.0 34.0 3 31.53449173036231 31.0 31.0 34.0 30.0 34.0 4 35.3797285917865 37.0 35.0 37.0 33.0 37.0 5 35.28537213369607 37.0 35.0 37.0 33.0 37.0 6 35.33338083516863 37.0 35.0 37.0 33.0 37.0 7 35.78020361013948 37.0 35.0 37.0 35.0 37.0 8 35.68975687697024 37.0 35.0 37.0 35.0 37.0 9 37.45555339638123 39.0 37.0 39.0 35.0 39.0 10 36.93137280304012 39.0 37.0 39.0 32.0 39.0 11 36.59063728030401 39.0 35.0 39.0 32.0 39.0 12 35.69290981128816 37.0 35.0 39.0 31.0 39.0 13 35.21543269853608 37.0 35.0 39.0 30.0 39.0 14 35.928932396251675 38.0 35.0 40.0 27.0 41.0 15 36.33927376171352 38.0 35.0 40.0 30.0 41.0 16 36.5265308546012 38.0 35.0 40.0 31.0 41.0 17 36.53619154035497 38.0 35.0 40.0 31.0 41.0 18 36.47379302154856 38.0 35.0 40.0 31.0 41.0 19 36.34986181284277 37.0 35.0 40.0 31.0 41.0 20 36.15657738480805 37.0 35.0 40.0 31.0 41.0 21 35.967697132616486 37.0 34.0 40.0 30.0 41.0 22 35.89760277669819 37.0 34.0 40.0 30.0 41.0 23 35.89714179297837 37.0 34.0 40.0 30.0 41.0 24 35.857772487800666 37.0 34.0 40.0 30.0 41.0 25 35.809479315109904 36.0 34.0 40.0 30.0 41.0 26 35.68100034546789 36.0 34.0 40.0 30.0 41.0 27 35.55641598652675 36.0 34.0 40.0 30.0 41.0 28 35.502499784082566 36.0 34.0 40.0 29.0 41.0 29 35.42572872133696 36.0 34.0 40.0 29.0 41.0 30 35.26424515265362 36.0 34.0 40.0 29.0 41.0 31 35.02457356306948 36.0 34.0 40.0 27.0 41.0 32 34.839925292568125 36.0 34.0 40.0 27.0 41.0 33 34.634789696420086 36.0 33.0 40.0 25.0 41.0 34 34.421567452606126 36.0 33.0 40.0 24.0 41.0 35 34.25114112363432 35.0 33.0 40.0 24.0 41.0 36 34.00976216694736 35.0 33.0 40.0 23.0 41.0 37 33.795585568078764 35.0 33.0 40.0 23.0 41.0 38 33.69518180247873 35.0 33.0 40.0 23.0 41.0 39 33.634486332426484 35.0 33.0 40.0 23.0 41.0 40 33.3784697931511 35.0 32.0 40.0 21.0 41.0 41 33.304158569762926 35.0 32.0 40.0 21.0 41.0 42 33.20518039901542 35.0 32.0 39.0 21.0 41.0 43 33.168826380791984 35.0 32.0 39.0 21.0 41.0 44 33.00268817204301 35.0 32.0 39.0 21.0 41.0 45 33.003028781793844 35.0 32.0 39.0 21.0 41.0 46 32.98209072850542 35.0 32.0 39.0 21.0 41.0 47 32.887291099883406 35.0 32.0 39.0 20.0 41.0 48 32.786071706179555 35.0 32.0 39.0 20.0 41.0 49 32.788827352420434 35.0 31.0 39.0 20.0 40.0 50 32.60902804767457 35.0 31.0 38.0 20.0 40.0 51 32.40560413697802 35.0 31.0 38.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 0.0 11 3.0 12 1.0 13 5.0 14 22.0 15 103.0 16 275.0 17 701.0 18 1479.0 19 2846.0 20 4890.0 21 7771.0 22 11352.0 23 15660.0 24 21677.0 25 29925.0 26 38323.0 27 43352.0 28 47031.0 29 52099.0 30 60402.0 31 71560.0 32 88498.0 33 112996.0 34 191632.0 35 252090.0 36 131409.0 37 162704.0 38 218498.0 39 285203.0 40 52.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.88218465258885 22.541132271019563 27.873807056181715 13.702876020209873 2 31.20665457529041 24.969015848339595 30.848555512372066 12.975774063997928 3 30.53552921362871 24.409411840912036 31.634225072332338 13.420833873126917 4 26.1797728548603 26.82957636999611 31.34333031048927 15.647320464654316 5 22.591441032949 32.40753335924342 30.28042276633415 14.72060284147342 6 20.79997408990802 40.502385887636564 28.043572138014422 10.654067884440991 7 87.16192727900851 4.247203869240403 7.022336658461804 1.5685321932892862 8 88.46067063954743 2.9845187200414562 6.498035151358121 2.056775489052986 9 84.56136373450792 4.346957723366584 8.226184307120956 2.865494235004534 10 53.06295072764174 20.850930604136977 13.931478602582374 12.1546400656389 11 45.74567085546487 20.45509996977156 19.143887377466857 14.655341797296714 12 40.91414043269854 20.477987217687957 24.63455974435376 13.97331260525975 13 24.94790991924688 34.279969339724495 26.071436282765468 14.700684458263162 14 18.44177786414475 37.7384268255819 29.172280519929178 14.647514790344172 15 15.876624778684631 21.94487627931079 46.575279613075956 15.603219328928617 16 18.660232327158095 16.665749017575678 43.63048970073844 21.043528954527787 17 19.294705704538583 17.488556376041803 28.314224640497475 34.90251327892214 18 24.276028846569073 20.883264239754716 34.009370816599734 20.831336097076477 19 29.42458004059248 23.870805803860602 25.776277151617222 20.9283370039297 20 30.037137798505853 23.50644513538023 24.053849807833487 22.402567258280435 21 23.793615321501058 25.37510256078076 29.61852787494062 21.212754242777564 22 23.03731053245239 22.5057218119791 27.534006995724837 26.922960659843675 23 20.44997193073369 28.665468324912553 25.73514488059766 25.149414863756096 24 20.971790387355878 25.473506930949608 34.64773070777735 18.906971973917173 25 20.718303320810122 22.448125836680052 33.03655482143628 23.797016021073542 26 18.35508701472557 29.61501921665155 27.361273049185993 24.668620719436888 27 19.674180593341106 28.676048279138055 29.92075830202531 21.72901282549553 28 17.38097551496308 25.560953491384897 36.46661916483137 20.59145182882066 29 17.81000345467893 25.0661247139094 35.43329230902103 21.69057952239064 30 22.075290408947616 26.74018655266226 31.413395517554086 19.771127520836032 31 29.75083128211772 23.54531027335147 24.783974608109858 21.919883836420954 32 30.114598177656866 24.759575938161245 25.58000820486246 19.545817679319427 33 28.442857451310623 25.002267133048324 25.797059204560174 20.757816211080883 34 20.631342574599472 25.86734032905817 29.451137884872825 24.050179211469533 35 21.705801701429372 25.46562594463877 29.786241741158182 23.042330612773675 36 31.52686012868679 22.819179945588807 26.21588504555858 19.438074880165825 37 22.123817852053374 29.55143153258194 27.51095780973356 20.813792805631127 38 23.543313037094617 30.265632422161765 22.724338213067323 23.466716327676295 39 21.576629097033294 26.64199809992659 25.988416029710237 25.792956773329877 40 24.33729541823207 23.78157792460163 25.476043960789397 26.40508269637691 41 19.82958716586777 22.335686833354927 27.27447424105022 30.56025175972708 42 23.75172733946539 24.358131450533314 24.964859437751006 26.925281772250294 43 23.10796951245844 24.61086280606296 26.321954484605087 25.959213196873517 44 21.862287861121906 27.662369909746516 27.55052467936261 22.92481754976897 45 19.473107483698236 31.119963725871223 24.19317053158872 25.213758258841818 46 23.648464827050137 27.77691410804508 27.110053115688558 21.46456794921622 47 23.44938895366412 25.67258280433562 27.76422895884614 23.113799283154123 48 23.309636395042535 25.579954225504164 27.422053806624348 23.68835557282895 49 22.64434080407652 22.401001856889927 30.37947488880252 24.575182450231033 50 21.140799758172474 27.69178866001641 27.797966057779504 23.369445524031608 51 20.665673446474067 30.84040462926977 24.415889363907244 24.078032560348923 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 536.0 1 1157.0 2 1778.0 3 8840.5 4 15903.0 5 11403.5 6 6904.0 7 7352.5 8 7801.0 9 8033.5 10 8266.0 11 8254.0 12 8242.0 13 7866.0 14 7490.0 15 7092.5 16 6695.0 17 6141.5 18 5588.0 19 5635.0 20 5682.0 21 5422.0 22 5162.0 23 5262.5 24 5363.0 25 6253.0 26 8273.5 27 9404.0 28 10504.5 29 11605.0 30 15392.0 31 19179.0 32 22670.5 33 26162.0 34 28385.5 35 30609.0 36 33169.0 37 35729.0 38 44567.0 39 53405.0 40 79493.0 41 105581.0 42 126040.5 43 146500.0 44 152997.5 45 159495.0 46 159880.0 47 160265.0 48 158948.0 49 157631.0 50 152187.0 51 146743.0 52 141521.0 53 136299.0 54 121787.0 55 107275.0 56 106364.0 57 105453.0 58 97387.5 59 89322.0 60 81025.0 61 72728.0 62 66741.5 63 60755.0 64 52297.5 65 43840.0 66 37621.5 67 31403.0 68 25462.5 69 19522.0 70 16286.0 71 13050.0 72 10472.5 73 7895.0 74 6423.0 75 3683.5 76 2416.0 77 1864.0 78 1312.0 79 974.5 80 637.0 81 553.5 82 470.0 83 360.5 84 251.0 85 164.0 86 77.0 87 52.5 88 28.0 89 19.0 90 10.0 91 7.0 92 4.0 93 2.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1852560.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.43728142706953 #Duplication Level Percentage of deduplicated Percentage of total 1 81.23048488885334 15.788997952419608 2 7.176723767213092 2.78991999175319 3 2.4838836928306964 1.448398391089769 4 1.2177630466764604 0.9468001219894387 5 0.7845335489671976 0.7624599690126528 6 0.5776873149783546 0.6737202550849462 7 0.47248688693096547 0.6428702414314009 8 0.3734515205089483 0.5807105842799565 9 0.29508001546115414 0.5161997973620233 >10 3.031873122750993 13.159518605265383 >50 0.9577578931218987 13.668023799388385 >100 1.3834880810384995 45.71859074755024 >500 0.011438397120814285 1.4683087314880823 >1k 0.002789852956296167 0.9674667089588536 >5k 5.579705912592334E-4 0.8680141029260898 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9761 0.5268925163017661 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6246 0.33715507190050525 No Hit GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 3217 0.17365159562983115 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2606 0.14067020771257072 No Hit GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 1946 0.10504383123893424 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.050632638079198516 0.0 2 0.0 0.0 0.0 0.19437966921449237 0.0 3 0.0 0.0 0.0 0.2761044176706827 0.0 4 0.0 0.0 0.0 0.4117005657036749 0.0 5 0.0 0.0 0.0 0.6807336874379237 0.0 6 0.0 0.0 0.0 0.9608325776223172 0.0 7 0.0 0.0 0.0 1.1624454808481237 0.0 8 0.0 0.0 0.0 1.750874465604353 0.0 9 0.0 0.0 0.0 2.028814181457011 0.0 10 0.0 0.0 0.0 2.4774366282333635 0.0 11 0.0 0.0 0.0 2.7856587640886126 0.0 12 0.0 0.0 0.0 3.0985771041153862 0.0 13 0.0 0.0 0.0 3.211501921665155 0.0 14 0.0 0.0 0.0 3.2529040894761843 0.0 15 0.0 0.0 0.0 3.318435030444358 0.0 16 0.0 0.0 0.0 3.4763246534525196 0.0 17 0.0 0.0 0.0 3.650677980740165 0.0 18 0.0 0.0 0.0 3.9590080753120005 0.0 19 0.0 0.0 0.0 4.062432525802134 0.0 20 0.0 0.0 0.0 4.190471563674051 0.0 21 0.0 0.0 0.0 4.333948698017878 0.0 22 0.0 0.0 0.0 4.483417541132271 0.0 23 0.0 0.0 0.0 4.642386751306301 0.0 24 0.0 0.0 0.0 4.7619510299261565 0.0 25 0.0 0.0 0.0 4.850369218810727 0.0 26 0.0 0.0 0.0 4.955143153258194 0.0 27 0.0 0.0 0.0 5.06882368182407 0.0 28 0.0 0.0 0.0 5.186390724187071 0.0 29 0.0 0.0 0.0 5.319719739171741 0.0 30 0.0 0.0 0.0 5.492507665068878 0.0 31 0.0 0.0 0.0 5.631936347540701 0.0 32 0.0 0.0 0.0 5.757060500064775 0.0 33 0.0 0.0 0.0 5.891415122857019 0.0 34 0.0 0.0 0.0 6.033002979660578 0.0 35 0.0 0.0 0.0 6.2170186120827395 0.0 36 0.0 0.0 0.0 6.363788487282463 0.0 37 0.0 0.0 0.0 6.504188798203567 0.0 38 0.0 0.0 0.0 6.710767802392366 0.0 39 0.0 0.0 0.0 7.113561773977631 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGACG 50 2.1827873E-11 45.0 1 CCTTACG 25 3.891733E-5 45.0 1 TACCCGA 20 7.0344063E-4 45.0 43 AAATCCG 20 7.0344063E-4 45.0 32 CTCGTTA 25 3.891733E-5 45.0 35 CGTATTA 35 1.2124656E-7 45.0 44 CGTGATA 20 7.0344063E-4 45.0 44 CTATACG 20 7.0344063E-4 45.0 1 GCTATCG 25 3.891733E-5 45.0 27 CCTCGTA 25 3.891733E-5 45.0 14 CGTTACA 20 7.0344063E-4 45.0 40 CTAACGG 55 1.8189894E-12 45.0 2 CTACGCA 25 3.891733E-5 45.0 1 ACTACGT 20 7.0344063E-4 45.0 13 CATACCG 20 7.0344063E-4 45.0 39 CGTAAAT 80 0.0 45.0 16 ATCGGAT 25 3.891733E-5 45.0 34 CGACTAA 20 7.0344063E-4 45.0 35 TATCGGC 25 3.891733E-5 45.0 29 AATGTCG 20 7.0344063E-4 45.0 1 >>END_MODULE