##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546356_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1443113 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.07671055558366 31.0 31.0 33.0 30.0 34.0 2 31.39091117604789 31.0 31.0 34.0 30.0 34.0 3 31.452518271264967 31.0 31.0 34.0 30.0 34.0 4 35.306795101977464 37.0 35.0 37.0 33.0 37.0 5 35.21219266959691 37.0 35.0 37.0 32.0 37.0 6 35.2543051029268 37.0 35.0 37.0 32.0 37.0 7 35.74956084520062 37.0 35.0 37.0 35.0 37.0 8 35.667139025149105 37.0 35.0 37.0 35.0 37.0 9 37.40382700453811 39.0 37.0 39.0 35.0 39.0 10 36.891488746896464 39.0 37.0 39.0 32.0 39.0 11 36.5263038999718 39.0 35.0 39.0 32.0 39.0 12 35.621176581459665 37.0 35.0 39.0 31.0 39.0 13 35.162226381440675 37.0 35.0 39.0 30.0 39.0 14 36.024045241086455 38.0 35.0 40.0 30.0 41.0 15 36.36997726442767 38.0 35.0 40.0 31.0 41.0 16 36.51357793880313 38.0 35.0 40.0 31.0 41.0 17 36.44747500715467 38.0 35.0 40.0 31.0 41.0 18 36.35248175298816 38.0 35.0 40.0 31.0 41.0 19 36.223351878889595 37.0 35.0 40.0 31.0 41.0 20 36.053715821283575 37.0 34.0 40.0 30.0 41.0 21 35.88265922349809 36.0 34.0 40.0 30.0 41.0 22 35.76661356387199 36.0 34.0 40.0 30.0 41.0 23 35.76283215520891 36.0 34.0 40.0 30.0 41.0 24 35.736166190727964 36.0 34.0 40.0 30.0 41.0 25 35.65233976826485 36.0 34.0 40.0 30.0 41.0 26 35.50992403228299 36.0 34.0 40.0 30.0 41.0 27 35.38639940184864 36.0 34.0 40.0 29.0 41.0 28 35.35385378691759 36.0 34.0 40.0 29.0 41.0 29 35.34775377950306 36.0 34.0 40.0 29.0 41.0 30 35.190274774047495 36.0 34.0 40.0 29.0 41.0 31 34.954117938096324 36.0 34.0 40.0 27.0 41.0 32 34.71102332249796 35.0 34.0 40.0 26.0 41.0 33 34.4823038805693 35.0 33.0 40.0 25.0 41.0 34 34.25771162757179 35.0 33.0 40.0 24.0 41.0 35 34.06070487896651 35.0 33.0 40.0 23.0 41.0 36 33.82964951462567 35.0 33.0 40.0 23.0 41.0 37 33.65295995531881 35.0 33.0 40.0 22.0 41.0 38 33.62509519351568 35.0 33.0 40.0 23.0 41.0 39 33.57949446786218 35.0 33.0 40.0 22.0 41.0 40 33.3445080184296 35.0 32.0 40.0 21.0 41.0 41 33.28504282062458 35.0 32.0 40.0 21.0 41.0 42 33.183180388507346 35.0 32.0 39.0 20.0 41.0 43 33.13465889365559 35.0 32.0 39.0 20.0 41.0 44 32.960765373189766 35.0 32.0 39.0 19.0 41.0 45 32.935391060852474 35.0 32.0 39.0 20.0 41.0 46 32.85450827481978 35.0 32.0 39.0 20.0 41.0 47 32.78815657540331 35.0 31.0 39.0 20.0 41.0 48 32.730946918224696 35.0 31.0 39.0 19.0 41.0 49 32.72931087170582 35.0 31.0 39.0 19.0 41.0 50 32.5571282359732 35.0 31.0 39.0 18.0 40.0 51 32.31715257225179 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 8.0 13 13.0 14 28.0 15 58.0 16 187.0 17 499.0 18 1152.0 19 2281.0 20 3869.0 21 6062.0 22 8993.0 23 12927.0 24 17822.0 25 24752.0 26 31443.0 27 35627.0 28 37867.0 29 41482.0 30 47568.0 31 56395.0 32 68890.0 33 88573.0 34 150803.0 35 201916.0 36 97382.0 37 118137.0 38 163394.0 39 224932.0 40 51.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.04807939503005 24.168724140105454 29.392639384441825 14.390557080422669 2 31.08571539442857 26.165310685996175 30.498166117275638 12.250807802299612 3 28.14187108008867 25.349712739057857 33.20827960111232 13.300136579741157 4 24.99617147097975 27.511289829694558 32.29760940411458 15.194929295211116 5 21.897592219043137 32.26185336837795 31.422002296424466 14.418552116154451 6 20.150674271522742 40.056045507177885 29.038405169934716 10.754875051364653 7 85.19339788360301 4.578990002861868 8.422763844549943 1.8048482689851728 8 86.63867625057775 3.3375071806573704 7.650821522638907 2.372995046125979 9 82.14450289062603 5.0966902799711455 9.765486140032001 2.9933206893708255 10 51.51245952326672 24.044548140027842 13.64550107995701 10.797491256748431 11 44.868558456614274 19.99524638749703 22.152804388845503 12.98339076704319 12 41.74129122251688 19.94902686068243 24.716359702947724 13.593322213852968 13 22.494842746202135 37.946231514787826 25.10475617640476 14.454169562605285 14 16.100125215419723 39.919604355306895 28.069319588971897 15.910950840301489 15 14.512723535856168 22.4432875318842 47.93373769067287 15.110251241586765 16 16.4183262156186 17.52752556452613 46.06160432343136 19.99254389642391 17 17.271689742937664 18.043077707705496 29.466853946988213 35.21837860236863 18 21.837236585076845 22.86695497857756 34.50346577156467 20.79234266478093 19 28.86530715196939 24.802631533358788 25.29372266759429 21.038338647077534 20 30.874366733582193 22.823715121407677 25.602638185644505 20.699279959365622 21 22.501009969420274 27.860396240627033 28.0091025442914 21.62949124566129 22 22.021075272691743 24.18493908654416 26.00634877518254 27.78763686558156 23 19.246517770957645 30.0171227062607 25.74531585537654 24.991043667405116 24 21.81374570113359 21.765655218960678 37.74756377359223 18.673035306313505 25 18.42399035972928 24.095895470417076 34.12317677132698 23.356937398526657 26 17.394202671585663 31.326999341007944 28.407616035611905 22.87118195179449 27 18.610739422345997 30.312595063588226 30.01767706340391 21.058988450661868 28 15.21072847379242 26.9353820525489 38.32811429181221 19.525775181846466 29 16.517417554966244 22.86397530893284 36.42854024598212 24.190066890118793 30 19.54753369971721 28.098076865775585 31.721008680539914 20.63338075396729 31 28.1314075890107 24.85986890839456 25.81481838220569 21.193905120389047 32 29.208939286112727 25.2337828014854 25.98202635552448 19.57525155687739 33 26.551559025523296 26.823817677479173 25.479917373067806 21.144705923929727 34 19.187340145920658 26.5681204451765 29.824622188283247 24.419917220619592 35 19.652584378354295 25.84551590901059 30.549582742307773 23.95231697032734 36 27.77959868700511 25.375836819431324 27.931146071028394 18.913418422535173 37 20.18081744118444 31.127361474811742 28.873206741260038 19.818614342743775 38 21.08379593282023 31.29103542134261 24.95320879238147 22.67195985345569 39 21.300480281169943 30.560531295886044 26.531186400510563 21.607802022433447 40 23.761895291636897 25.73679261429978 25.660776391037988 24.840535703025335 41 17.516923484162366 24.38450765809746 27.30285154385 30.79571731389018 42 22.202280763876423 25.789941605404426 23.87844888099546 28.129328749723687 43 21.993634594103163 26.435767677236637 25.663686766039806 25.906910962620387 44 20.2824726823194 29.697743697132516 26.43736145402335 23.582422166524726 45 18.203910573877444 33.91570861048303 23.07712563049463 24.80325518514489 46 22.85018567499565 30.519578161931882 25.896239587613724 20.73399657545875 47 21.950602620861982 26.15463931098951 27.46451594573675 24.43024212241176 48 23.88316091671269 22.15363592456031 29.826423848998658 24.136779309728343 49 21.02538054885515 21.947553656574364 31.719276314467404 25.307789480103082 50 19.14617912803779 29.332699518332937 28.7594249376175 22.761696416011777 51 18.513934806214067 30.478070670834505 25.238356247916833 25.769638275034595 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 944.0 1 1230.0 2 1516.0 3 7679.5 4 13843.0 5 10415.5 6 6988.0 7 7236.5 8 7485.0 9 7842.5 10 8200.0 11 8217.0 12 8234.0 13 7870.5 14 7507.0 15 7120.0 16 6733.0 17 6406.0 18 6079.0 19 5901.5 20 5724.0 21 5320.0 22 4916.0 23 5125.0 24 5334.0 25 5541.5 26 6745.5 27 7742.0 28 9558.5 29 11375.0 30 13431.5 31 15488.0 32 19606.5 33 23725.0 34 26605.5 35 29486.0 36 32846.5 37 36207.0 38 43207.0 39 50207.0 40 71445.5 41 92684.0 42 112565.5 43 132447.0 44 131838.5 45 131230.0 46 133745.5 47 136261.0 48 128945.0 49 121629.0 50 117890.0 51 114151.0 52 103495.5 53 92840.0 54 84564.5 55 76289.0 56 68434.0 57 60579.0 58 62588.0 59 64597.0 60 58696.5 61 52796.0 62 44361.5 63 35927.0 64 30704.0 65 25481.0 66 21022.5 67 16564.0 68 13487.0 69 10410.0 70 8339.5 71 6269.0 72 5143.5 73 4018.0 74 3440.0 75 2034.0 76 1206.0 77 918.5 78 631.0 79 464.5 80 298.0 81 244.5 82 191.0 83 195.5 84 200.0 85 124.0 86 48.0 87 28.0 88 8.0 89 8.0 90 8.0 91 5.0 92 2.0 93 2.5 94 3.0 95 2.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1443113.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.81116704974417 #Duplication Level Percentage of deduplicated Percentage of total 1 81.31943941170813 17.736718774003158 2 7.304786848442226 3.1865185242829526 3 2.487694384592835 1.6277855337319453 4 1.2701590892852364 1.1081460830460486 5 0.7707783203344445 0.8405787351567896 6 0.525993731900776 0.6883522292163706 7 0.40602171020026184 0.6199065142900511 8 0.33595525422972905 0.5862060936995113 9 0.25942407084836355 0.509250757139849 >10 3.1271257357109263 15.799451044315335 >50 1.056700483966734 16.573425245400422 >100 1.1295322019818805 39.04328413617528 >500 0.004791567598904805 0.6410623852773261 >1k 0.001277751359707948 0.5341141447164419 >5k 3.19437839926987E-4 0.5051997995485156 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7251 0.5024554556711776 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4400 0.30489642876198886 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11024777685461915 0.0 2 0.0 0.0 0.0 0.3942172234606715 0.0 3 0.0 0.0 0.0 0.5459724914126614 0.0 4 0.0 0.0 0.0 0.8053423397890532 0.0 5 0.0 0.0 0.0 1.3260915811859502 0.0 6 0.0 0.0 0.0 1.8153117600631412 0.0 7 0.0 0.0 0.0 2.1621314477799034 0.0 8 0.0 0.0 0.0 3.0845124394278205 0.0 9 0.0 0.0 0.0 3.4706221896691387 0.0 10 0.0 0.0 0.0 4.1051532347085775 0.0 11 0.0 0.0 0.0 4.542956788553633 0.0 12 0.0 0.0 0.0 5.028227172785499 0.0 13 0.0 0.0 0.0 5.200978717536326 0.0 14 0.0 0.0 0.0 5.264106137218638 0.0 15 0.0 0.0 0.0 5.35945556584966 0.0 16 0.0 0.0 0.0 5.573506717769156 0.0 17 0.0 0.0 0.0 5.82858029828572 0.0 18 0.0 0.0 0.0 6.262780530699952 0.0 19 0.0 0.0 0.0 6.416545343296055 0.0 20 0.0 0.0 0.0 6.596988593408832 0.0 21 0.0 0.0 0.0 6.7920530131736045 0.0 22 0.0 0.0 0.0 6.995502084729332 0.0 23 0.0 0.0 0.0 7.23138104916247 0.0 24 0.0 0.0 0.0 7.412586540347152 0.0 25 0.0 0.0 0.0 7.557135165437495 0.0 26 0.0 0.0 0.0 7.69745681731091 0.0 27 0.0 0.0 0.0 7.833274317395796 0.0 28 0.0 0.0 0.0 7.975882692484927 0.0 29 0.0 0.0 0.0 8.12819231758012 0.0 30 0.0 0.0 0.0 8.340857576641607 0.0 31 0.0 0.0 0.0 8.517351032109058 0.0 32 0.0 0.0 0.0 8.67998555899642 0.0 33 0.0 0.0 0.0 8.850588969817332 0.0 34 0.0 0.0 0.0 9.025350059212272 0.0 35 0.0 0.0 0.0 9.240787103989778 0.0 36 0.0 0.0 0.0 9.413330764811903 0.0 37 0.0 0.0 0.0 9.586567372063033 0.0 38 0.0 0.0 0.0 9.764308131102693 0.0 39 0.0 0.0 0.0 9.947453872288587 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACACT 25 3.8913022E-5 45.000004 11 CGTAGTG 25 3.8913022E-5 45.000004 13 TTGCGAA 25 3.8913022E-5 45.000004 1 ACCGTTC 50 2.1827873E-11 45.000004 15 GCTACGT 25 3.8913022E-5 45.000004 21 CAATCGA 25 3.8913022E-5 45.000004 45 TTTTACG 55 1.8189894E-12 45.000004 1 TACCGTT 50 2.1827873E-11 45.000004 14 TATCACG 20 7.0338865E-4 45.0 1 CGTGATA 20 7.0338865E-4 45.0 2 CGTTATG 20 7.0338865E-4 45.0 3 ACCCGGT 20 7.0338865E-4 45.0 15 TATCGTT 20 7.0338865E-4 45.0 9 CCCATCG 20 7.0338865E-4 45.0 18 AATCGCG 40 6.8175723E-9 45.0 1 TACGTAG 70 0.0 45.0 1 GCACGAC 30 2.1658907E-6 44.999996 15 CTACCGT 30 2.1658907E-6 44.999996 35 GTTCACG 30 2.1658907E-6 44.999996 1 CGTCGAA 30 2.1658907E-6 44.999996 38 >>END_MODULE