SRR1546353_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546353_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2269236
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14488	0.6384527656004048	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCG	7749	0.3414805687905533	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6184	0.2725146260679806	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGC	4503	0.19843683072188176	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC	4068	0.17926738338365864	No Hit
GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	2339	0.10307433867610069	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGCGTA	20	7.0347404E-4	45.000004	29
AACTCGT	20	7.0347404E-4	45.000004	19
TCGCGAT	20	7.0347404E-4	45.000004	13
TATCCGT	20	7.0347404E-4	45.000004	33
CTATACG	25	3.892013E-5	44.999996	1
CCTAACG	25	3.892013E-5	44.999996	19
CGTTTTT	10945	0.0	43.519875	1
CGCATCG	115	0.0	43.04348	21
TAGTACG	105	0.0	42.857143	1
CGACGGT	380	0.0	42.039474	28
CGGTCTA	380	0.0	42.039474	31
CGTAAGG	400	0.0	41.624996	2
TGCGTAG	195	0.0	41.53846	1
CGGGATC	335	0.0	40.97015	6
CGCAATA	50	1.0822987E-9	40.499996	38
TATAGCG	135	0.0	40.0	1
TTACGGG	575	0.0	39.913044	3
CACGACG	390	0.0	39.807693	26
ACGGGAT	550	0.0	39.68182	5
ACGCTAG	40	3.460209E-7	39.375004	1