##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546353_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2269236 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.20062170704149 31.0 31.0 33.0 30.0 34.0 2 31.531261622854565 31.0 31.0 34.0 30.0 34.0 3 31.587961322665425 31.0 31.0 34.0 30.0 34.0 4 35.45634874468764 37.0 35.0 37.0 33.0 37.0 5 35.36369641588623 37.0 35.0 37.0 33.0 37.0 6 35.41305796312063 37.0 35.0 37.0 33.0 37.0 7 35.79374908559533 37.0 35.0 37.0 35.0 37.0 8 35.697527714173404 37.0 35.0 37.0 35.0 37.0 9 37.4700608486733 39.0 37.0 39.0 35.0 39.0 10 36.986500302304385 39.0 37.0 39.0 33.0 39.0 11 36.72791327125076 39.0 35.0 39.0 32.0 39.0 12 36.08333157062553 37.0 35.0 39.0 32.0 39.0 13 35.78151589345489 37.0 35.0 39.0 31.0 39.0 14 36.67473149553418 39.0 35.0 41.0 31.0 41.0 15 36.93130507360186 39.0 35.0 41.0 31.0 41.0 16 37.04847226114869 38.0 35.0 41.0 32.0 41.0 17 36.934310490402936 38.0 35.0 41.0 32.0 41.0 18 36.87027484140037 38.0 35.0 40.0 32.0 41.0 19 36.76268797075315 38.0 35.0 40.0 31.0 41.0 20 36.51009018013111 38.0 35.0 40.0 31.0 41.0 21 36.432811748094956 38.0 35.0 40.0 31.0 41.0 22 36.32506667442258 38.0 35.0 40.0 31.0 41.0 23 36.25700500080203 38.0 35.0 40.0 31.0 41.0 24 36.27938301701542 38.0 35.0 40.0 31.0 41.0 25 36.259548147482235 38.0 35.0 40.0 31.0 41.0 26 36.12633503082095 38.0 35.0 40.0 30.0 41.0 27 35.983382953557935 38.0 35.0 40.0 30.0 41.0 28 35.949568489130264 38.0 35.0 40.0 30.0 41.0 29 35.86587247866683 37.0 35.0 40.0 30.0 41.0 30 35.71818312418805 37.0 34.0 40.0 30.0 41.0 31 35.50000749150816 37.0 34.0 40.0 29.0 41.0 32 35.26532498162377 37.0 34.0 40.0 27.0 41.0 33 35.0516129657735 37.0 34.0 40.0 27.0 41.0 34 34.76672236823318 37.0 34.0 40.0 25.0 41.0 35 34.55540410957697 37.0 33.0 40.0 24.0 41.0 36 34.35083569976856 37.0 33.0 40.0 23.0 41.0 37 34.17409824275659 36.0 33.0 40.0 23.0 41.0 38 34.071662444981484 36.0 33.0 40.0 23.0 41.0 39 33.998177360133546 36.0 33.0 40.0 23.0 41.0 40 33.79063526226448 36.0 33.0 40.0 22.0 41.0 41 33.65882349830515 36.0 33.0 40.0 21.0 41.0 42 33.57680029754508 36.0 33.0 40.0 21.0 41.0 43 33.51893765126236 35.0 33.0 40.0 21.0 41.0 44 33.36480692180099 35.0 32.0 40.0 21.0 41.0 45 33.34315425984781 35.0 32.0 40.0 20.0 41.0 46 33.28473812331551 35.0 32.0 39.0 20.0 41.0 47 33.16913269488057 35.0 32.0 39.0 20.0 41.0 48 33.09520693308232 35.0 32.0 39.0 20.0 41.0 49 33.10838097051166 35.0 32.0 39.0 20.0 41.0 50 32.95252146537425 35.0 32.0 39.0 20.0 41.0 51 32.762735563863785 35.0 31.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 4.0 11 6.0 12 8.0 13 12.0 14 41.0 15 91.0 16 214.0 17 655.0 18 1592.0 19 3059.0 20 5490.0 21 8911.0 22 13135.0 23 18549.0 24 25312.0 25 34417.0 26 43655.0 27 49352.0 28 52102.0 29 57186.0 30 66026.0 31 79653.0 32 99142.0 33 128131.0 34 208331.0 35 276574.0 36 172924.0 37 216608.0 38 301907.0 39 406069.0 40 77.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.60506707984538 22.4814430936227 27.462414662908575 14.45107516362335 2 32.93148002235113 25.653832391166016 28.871347008420457 12.543340578062395 3 29.32824087049562 25.54846653234833 31.293836339631486 13.829456257524559 4 26.18550913170776 26.198509101741728 32.12195646464273 15.49402530190778 5 23.707141963198186 30.893305059500204 30.690417391580247 14.709135585721361 6 19.59619889689746 41.310203081565774 28.439219190952375 10.65437883058439 7 84.78959438330787 3.9448959914261894 9.493371337313528 1.772138287952421 8 85.81134796028267 4.397074610133102 7.836558207255657 1.9550192223285725 9 81.88310955757797 4.229088556677225 9.403208833281333 4.484593052463472 10 46.946769749818884 23.54920334420924 15.90284130870478 13.601185597267099 11 39.34588557558579 22.081925370477112 22.69649344537104 15.875695608566055 12 34.507517067418284 20.918009409334243 28.016125250965523 16.558348272281947 13 24.54786544898812 30.944291382650373 28.90999437696211 15.597848791399397 14 18.387554225298736 35.4705724746126 30.597654893541264 15.544218406547403 15 16.43213839371489 22.764798372668157 43.130331089406305 17.672732144210652 16 19.06474249483086 18.587224951481467 40.36697813713514 21.98105441655253 17 19.542568512045463 18.974007110763267 30.534594021952767 30.948830355238506 18 22.65546642129774 22.412521218595156 33.72663751147964 21.205374848627468 19 27.72135643890719 24.150286704423866 26.37892224519618 21.749434611472758 20 29.20612928756639 23.312603889591035 26.054055197432085 21.427211625410493 21 24.069246213262964 26.718463835405398 29.070268583787673 20.142021367543965 22 23.32683775508585 22.148511657668042 28.620117079052154 25.90453350819395 23 21.00596852861492 27.779393593262224 26.94999550509511 24.26464237302775 24 21.551526593091243 25.555649566638287 33.28547581653032 19.607348023740148 25 21.26323573220238 24.997664412163388 31.71380147327118 22.02529838236305 26 18.760983872986326 28.365802411031733 29.20515979827572 23.668053917706224 27 20.087333358011243 27.73647165830262 30.25842177719726 21.91777320648888 28 18.41051349440957 26.385884941010985 35.49679275315569 19.706808811423755 29 19.085233973019992 24.394509870282334 35.07938354582776 21.440872610869913 30 21.46123188597396 26.4476678494436 32.64402644766785 19.447073816914592 31 27.946718631292644 23.866270409952953 26.63557250105322 21.551438457701185 32 27.832847707334096 25.59288676893897 27.143188280108372 19.431077243618557 33 27.038130895155906 24.598587365968104 26.653111443675314 21.710170295200676 34 21.60793324273015 25.8006659510073 29.713833202011603 22.877567604250945 35 22.027898376369844 24.74189551020696 30.73906812689381 22.491137986529385 36 29.21956993455066 24.022490388835713 26.38883747657802 20.36910220003561 37 22.77079157919229 28.008633742810357 28.366243087982035 20.854331590015317 38 23.279685321403328 29.142715874417647 23.942463454660512 23.635135349518517 39 21.948708728400216 27.993959200365232 25.899333520180363 24.157998551054188 40 24.17505274903095 24.019273447098495 26.64676569559094 25.158908108279615 41 20.637121921210486 23.211777003361483 27.77467834989397 28.376422725534056 42 23.016733385156943 25.45517522196898 25.917225004362702 25.610866388511376 43 23.33441739863108 24.93689506071647 26.584498042512987 25.144189498139465 44 22.199806454683426 26.773372183413276 28.61504929412366 22.41177206777964 45 20.981334687092925 29.488074400370873 25.78074735285356 23.749843559682642 46 24.356391314081037 27.261950718215296 27.286937101297532 21.09472086640614 47 22.739723854195862 26.808097527097225 28.119331792726715 22.332846825980198 48 23.5703117701288 25.595090153690492 28.572744306894478 22.261853769286226 49 23.074682404121916 23.146644950106555 30.641854791656755 23.136817854114778 50 21.355689756376155 27.38873347681775 28.360822761493292 22.8947540053128 51 21.475201345298593 29.740009412859656 25.45645318512486 23.328336056716886 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 883.0 1 1890.0 2 2897.0 3 14209.5 4 25522.0 5 18440.5 6 11359.0 7 11537.5 8 11716.0 9 12096.0 10 12476.0 11 12316.0 12 12156.0 13 11574.0 14 10992.0 15 10633.0 16 10274.0 17 9539.0 18 8804.0 19 8279.0 20 7754.0 21 8079.5 22 8405.0 23 9515.0 24 10625.0 25 11692.5 26 14110.0 27 15460.0 28 18660.5 29 21861.0 30 24659.0 31 27457.0 32 31659.5 33 35862.0 34 43365.0 35 50868.0 36 51141.0 37 51414.0 38 63488.5 39 75563.0 40 96511.5 41 117460.0 42 136550.0 43 155640.0 44 167643.0 45 179646.0 46 195889.5 47 212133.0 48 196789.0 49 181445.0 50 179769.0 51 178093.0 52 163223.5 53 148354.0 54 136388.0 55 124422.0 56 120762.0 57 117102.0 58 112443.5 59 107785.0 60 97408.5 61 87032.0 62 78349.0 63 69666.0 64 63811.5 65 57957.0 66 48752.0 67 39547.0 68 33047.0 69 26547.0 70 21911.5 71 17276.0 72 14108.5 73 10941.0 74 8612.0 75 4752.0 76 3221.0 77 2594.0 78 1967.0 79 1428.5 80 890.0 81 651.0 82 412.0 83 270.0 84 128.0 85 107.0 86 86.0 87 68.0 88 50.0 89 34.5 90 19.0 91 15.5 92 12.0 93 12.0 94 12.0 95 6.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2269236.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.54430415897644 #Duplication Level Percentage of deduplicated Percentage of total 1 80.70905936019868 15.774024045206076 2 6.842196587499834 2.6745194244321486 3 2.3821632602916103 1.396731699464346 4 1.242771466386696 0.9715641415663501 5 0.8030474488797038 0.7847501797497507 6 0.5893601730718303 0.6911180689021709 7 0.4816340111373528 0.6589241124883389 8 0.4018995389313531 0.6283877464181408 9 0.3416340776278657 0.6009300291807338 >10 3.7426935795930976 16.763383049725054 >50 1.186824285342385 16.846198876940637 >100 1.2635401364032237 38.31265604012864 >500 0.00817825322255483 1.152123119040904 >1k 0.004316300311903938 1.4828107366992591 >5k 4.543474012530461E-4 0.6186184985007868 >10k+ 2.2717370062652305E-4 0.6432602315566927 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14488 0.6384527656004048 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCG 7749 0.3414805687905533 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6184 0.2725146260679806 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGC 4503 0.19843683072188176 No Hit GAATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC 4068 0.17926738338365864 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2339 0.10307433867610069 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.042657528789425164 0.0 2 0.0 0.0 0.0 0.18993176558101493 0.0 3 0.0 0.0 0.0 0.2791247803225403 0.0 4 0.0 0.0 0.0 0.45358878494788557 0.0 5 0.0 0.0 0.0 0.8967335261735668 0.0 6 0.0 0.0 0.0 1.1540888651510905 0.0 7 0.0 0.0 0.0 1.3691392168994323 0.0 8 0.0 0.0 0.0 1.8079653240121345 0.0 9 0.0 0.0 0.0 1.9949886217211432 0.0 10 0.0 0.0 0.0 2.661159967495668 0.0 11 0.0 0.0 0.0 2.9598948721067355 0.0 12 0.0 0.0 0.0 3.444286975880869 0.0 13 0.0 0.0 0.0 3.5740222700503606 0.0 14 0.0 0.0 0.0 3.6301645135190874 0.0 15 0.0 0.0 0.0 3.7455337391086694 0.0 16 0.0 0.0 0.0 3.917397749727221 0.0 17 0.0 0.0 0.0 4.095431237650028 0.0 18 0.0 0.0 0.0 4.367417051377644 0.0 19 0.0 0.0 0.0 4.525003128806347 0.0 20 0.0 0.0 0.0 4.656897740032328 0.0 21 0.0 0.0 0.0 4.793463526931531 0.0 22 0.0 0.0 0.0 4.9380496343262665 0.0 23 0.0 0.0 0.0 5.0973984195561854 0.0 24 0.0 0.0 0.0 5.210255786529035 0.0 25 0.0 0.0 0.0 5.30610302322015 0.0 26 0.0 0.0 0.0 5.405607878598788 0.0 27 0.0 0.0 0.0 5.534417751172642 0.0 28 0.0 0.0 0.0 5.6490378259467064 0.0 29 0.0 0.0 0.0 5.7712375442659996 0.0 30 0.0 0.0 0.0 5.91745415637686 0.0 31 0.0 0.0 0.0 6.038508114625363 0.0 32 0.0 0.0 0.0 6.155463777236039 0.0 33 0.0 0.0 0.0 6.281321114242855 0.0 34 0.0 0.0 0.0 6.410175054511739 0.0 35 4.4067695030397896E-5 0.0 0.0 6.5614153838560645 0.0 36 4.4067695030397896E-5 0.0 0.0 6.680882905083473 0.0 37 4.4067695030397896E-5 0.0 0.0 6.813879208685214 0.0 38 4.4067695030397896E-5 0.0 0.0 6.957672097569402 1.3220308509119367E-4 39 4.4067695030397896E-5 0.0 0.0 7.167522461304157 1.3220308509119367E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGCGTA 20 7.0347404E-4 45.000004 29 AACTCGT 20 7.0347404E-4 45.000004 19 TCGCGAT 20 7.0347404E-4 45.000004 13 TATCCGT 20 7.0347404E-4 45.000004 33 CTATACG 25 3.892013E-5 44.999996 1 CCTAACG 25 3.892013E-5 44.999996 19 CGTTTTT 10945 0.0 43.519875 1 CGCATCG 115 0.0 43.04348 21 TAGTACG 105 0.0 42.857143 1 CGACGGT 380 0.0 42.039474 28 CGGTCTA 380 0.0 42.039474 31 CGTAAGG 400 0.0 41.624996 2 TGCGTAG 195 0.0 41.53846 1 CGGGATC 335 0.0 40.97015 6 CGCAATA 50 1.0822987E-9 40.499996 38 TATAGCG 135 0.0 40.0 1 TTACGGG 575 0.0 39.913044 3 CACGACG 390 0.0 39.807693 26 ACGGGAT 550 0.0 39.68182 5 ACGCTAG 40 3.460209E-7 39.375004 1 >>END_MODULE