##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546352_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 838979 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.29726012212463 31.0 31.0 33.0 30.0 34.0 2 31.63862146728345 31.0 31.0 34.0 30.0 34.0 3 31.668699693317713 31.0 31.0 34.0 30.0 34.0 4 35.52733977846883 37.0 35.0 37.0 33.0 37.0 5 35.46182800761402 37.0 35.0 37.0 33.0 37.0 6 35.51183641068489 37.0 35.0 37.0 33.0 37.0 7 35.91720412549063 37.0 35.0 37.0 35.0 37.0 8 35.843599184246564 37.0 35.0 37.0 35.0 37.0 9 37.63781691794431 39.0 37.0 39.0 35.0 39.0 10 37.155788166330744 39.0 37.0 39.0 33.0 39.0 11 36.84059314953056 39.0 37.0 39.0 32.0 39.0 12 35.95874866951378 37.0 35.0 39.0 32.0 39.0 13 35.584754803159555 37.0 35.0 39.0 31.0 39.0 14 36.4852159589215 38.0 35.0 41.0 31.0 41.0 15 36.800759017806165 38.0 35.0 41.0 32.0 41.0 16 36.93124857713959 38.0 35.0 41.0 32.0 41.0 17 36.8754033176039 38.0 35.0 41.0 32.0 41.0 18 36.76780348495016 38.0 35.0 40.0 32.0 41.0 19 36.63023508335727 37.0 35.0 40.0 32.0 41.0 20 36.47408099606784 37.0 35.0 40.0 32.0 41.0 21 36.32782107776237 37.0 35.0 40.0 31.0 41.0 22 36.2149052598456 37.0 35.0 40.0 31.0 41.0 23 36.168949401594084 37.0 35.0 40.0 31.0 41.0 24 36.1376601798138 37.0 35.0 40.0 31.0 41.0 25 36.082141507713544 37.0 35.0 40.0 31.0 41.0 26 35.96899445635707 36.0 35.0 40.0 31.0 41.0 27 35.86619927316417 36.0 34.0 40.0 30.0 41.0 28 35.85175791050789 36.0 35.0 40.0 30.0 41.0 29 35.83072758674532 36.0 35.0 40.0 30.0 41.0 30 35.70032384600807 36.0 35.0 40.0 30.0 41.0 31 35.44110162471289 36.0 34.0 40.0 30.0 41.0 32 35.18564946202468 36.0 34.0 40.0 29.0 41.0 33 34.94569470749566 36.0 34.0 40.0 27.0 41.0 34 34.67701813752192 36.0 34.0 40.0 25.0 41.0 35 34.48075219999547 36.0 34.0 40.0 24.0 41.0 36 34.26961103913209 36.0 33.0 40.0 23.0 41.0 37 34.06680381749722 35.0 33.0 40.0 23.0 41.0 38 34.02314599054327 35.0 33.0 40.0 23.0 41.0 39 33.98896873461672 35.0 33.0 40.0 23.0 41.0 40 33.75511425196578 35.0 33.0 40.0 23.0 41.0 41 33.712393278020066 35.0 33.0 40.0 22.0 41.0 42 33.61985222514509 35.0 33.0 40.0 22.0 41.0 43 33.55862423254933 35.0 33.0 40.0 22.0 41.0 44 33.38964980053136 35.0 33.0 40.0 22.0 41.0 45 33.3544296102763 35.0 33.0 39.0 22.0 41.0 46 33.25291574640128 35.0 32.0 39.0 21.0 41.0 47 33.22160983767174 35.0 32.0 39.0 21.0 41.0 48 33.16049388602099 35.0 32.0 39.0 20.0 41.0 49 33.1733213822992 35.0 32.0 39.0 20.0 41.0 50 33.035676697509714 35.0 32.0 39.0 20.0 41.0 51 32.83255480768887 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 2.0 13 1.0 14 11.0 15 28.0 16 86.0 17 181.0 18 443.0 19 878.0 20 1578.0 21 2608.0 22 3983.0 23 6119.0 24 8668.0 25 12600.0 26 16679.0 27 18750.0 28 19194.0 29 20973.0 30 23929.0 31 28531.0 32 36097.0 33 47475.0 34 86883.0 35 123792.0 36 57669.0 37 70908.0 38 102721.0 39 148164.0 40 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.270176011556906 23.017739418984267 29.28476159713175 15.42732297232708 2 32.10533279140479 25.52197373235802 29.423501660947416 12.949191815289776 3 28.030975745519253 25.250453229461044 33.6146673516262 13.103903673393495 4 24.99228228596902 26.801981932801656 32.939322676729695 15.266413104499636 5 22.21330927234174 32.50033671879749 31.406745580044316 13.879608428816454 6 19.5457812412468 40.642852800844835 29.26819384037026 10.543172117538104 7 86.0593650139038 4.242060885910136 8.21176692146049 1.48680717872557 8 87.82532101518632 3.2316661084484832 7.574683037358504 1.3683298390066974 9 84.13976988696976 4.592844397773961 9.078415550329627 2.188970164926655 10 51.49449509463289 24.52147193195539 14.022281844956785 9.961751128454942 11 45.161917044407545 19.67355559555126 22.505688461808937 12.658838898232256 12 40.50542385447073 20.979666952331346 25.719714081043744 12.795195112154179 13 22.834540554650353 38.546733589279356 25.408025707437254 13.210700148633043 14 15.948551751593307 41.078262983936426 28.705724457942335 14.267460806527934 15 14.765804626814258 22.222487094432637 48.63566310956532 14.376045169187787 16 16.542368760123914 18.038234568445695 45.785889754093965 19.63350691733643 17 17.545135217925598 17.93012697576459 29.97214471399165 34.55259309231816 18 22.495080329781793 22.57374737627521 33.9308850400308 21.000287253912195 19 28.111788256917038 23.58545327117842 26.748226117697822 21.55453235420672 20 30.306122084104608 22.48339946530247 25.736639415289297 21.473839035303623 21 22.725121844527692 26.535109937197475 28.965802481349357 21.773965736925476 22 22.541565402709722 24.039934253419933 26.995908121657397 26.422592222212955 23 20.1112304360419 28.54445701263083 26.164659663710292 25.17965288761697 24 20.787290265906535 23.46065872924114 37.937540748934126 17.814510255918208 25 17.987100988224974 23.762454125788608 35.9865979958974 22.263846890089027 26 17.3682535558101 32.15360575175302 29.04256244792778 21.4355782445091 27 17.647521570861727 31.363717089462313 31.000179980666974 19.988581359008986 28 15.512068836049531 28.220968582050325 38.64971590468891 17.617246677211227 29 16.454881469023658 23.2538597509592 38.706809109643984 21.584449670373157 30 19.527306404570314 28.252673785637068 32.70177203481851 19.518247774974107 31 28.321090277587402 25.394437763042937 26.088853237089367 20.195618722280294 32 28.199275548017294 28.03848487268454 26.786725293481723 16.975514285816452 33 28.25040912823801 26.84858619822427 25.48407051904756 19.41693415449016 34 19.85270191506581 27.429768802318055 29.5446012355494 23.172928047066733 35 20.72209197131275 25.347356727641575 31.19684759690052 22.733703704145157 36 29.078201003839187 24.62135524250309 27.125947133360906 19.174496620296814 37 21.503160388996626 30.97622228923489 28.447434321955615 19.073182999812868 38 22.096381435053797 31.06406715781921 24.52028000700852 22.319271400118478 39 21.675751121303392 29.960940619491073 27.046684124394055 21.31662413481148 40 23.353266291528154 25.848561167800387 25.84438943048634 24.953783110185118 41 18.477578103861955 24.404901672151507 27.58567258536864 29.53184763861789 42 22.339295739225893 26.126398872915768 24.123011422216766 27.41129396564157 43 23.502376102381586 26.24416105766652 25.629604555060375 24.62385828489152 44 20.73436879826551 29.874049290864253 27.278632719054947 22.11294919181529 45 18.93074796866191 34.224456154444866 23.57198451927879 23.272811357614433 46 22.683046893903185 31.81581422181008 26.18539915778583 19.3157397265009 47 22.891156989626676 26.75096754507562 27.327024871897866 23.030850593399833 48 23.942196407776596 23.80047653159376 30.08907255127959 22.168254509350056 49 21.498511881703834 23.651128335750954 31.288506625314817 23.561853157230395 50 19.337075183049873 30.990406196102644 27.480425612560026 22.192093008287454 51 19.49655474094107 32.34824709557689 24.36759442131448 23.787603742167562 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 376.0 1 640.0 2 904.0 3 4920.0 4 8936.0 5 6705.0 6 4474.0 7 4715.5 8 4957.0 9 5261.0 10 5565.0 11 5602.0 12 5639.0 13 5385.5 14 5132.0 15 4789.5 16 4447.0 17 4190.5 18 3934.0 19 3730.0 20 3526.0 21 3572.0 22 3618.0 23 3458.0 24 3298.0 25 3390.0 26 4412.0 27 5342.0 28 5851.0 29 6360.0 30 8713.5 31 11067.0 32 12752.0 33 14437.0 34 16278.0 35 18119.0 36 19027.5 37 19936.0 38 25551.0 39 31166.0 40 42887.0 41 54608.0 42 66931.0 43 79254.0 44 80746.0 45 82238.0 46 78631.0 47 75024.0 48 71266.5 49 67509.0 50 65283.5 51 63058.0 52 58456.5 53 53855.0 54 46408.0 55 38961.0 56 37565.5 57 36170.0 58 35017.5 59 33865.0 60 31125.5 61 28386.0 62 25182.5 63 21979.0 64 18035.0 65 14091.0 66 11771.0 67 9451.0 68 7410.0 69 5369.0 70 4747.5 71 4126.0 72 3610.0 73 3094.0 74 2399.5 75 1260.0 76 815.0 77 594.0 78 373.0 79 249.5 80 126.0 81 126.0 82 126.0 83 86.5 84 47.0 85 31.5 86 16.0 87 9.0 88 2.0 89 5.5 90 9.0 91 6.5 92 4.0 93 3.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 838979.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.334683431491893 #Duplication Level Percentage of deduplicated Percentage of total 1 79.98243854782974 17.06400006496702 2 6.064554524210373 2.587707018541005 3 2.1779129301731897 1.3939524871979372 4 1.2025014966752827 1.0261995502984944 5 0.8947871835911994 0.9545000650237226 6 0.6426653477652753 0.8226637048177077 7 0.5377888180760015 0.8031487930653374 8 0.43589204049765595 0.7439694955459627 9 0.37574273522994145 0.7214717077032309 >10 5.118172732176916 26.035443018543624 >50 1.978996562071706 30.71340176716737 >100 0.5863071308684425 15.969411009199424 >500 0.0011199754171316953 0.13548079993141274 >1k 0.0011199754171316953 1.0286505179977634 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4891 0.5829704915140904 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3719 0.44327688774093277 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.048868922821667764 0.0 2 0.0 0.0 0.0 0.17008768991834122 0.0 3 0.0 0.0 0.0 0.23576275449087522 0.0 4 0.0 0.0 0.0 0.3245611630326862 0.0 5 0.0 0.0 0.0 0.5007276701800641 0.0 6 0.0 0.0 0.0 0.6795164122105559 0.0 7 0.0 0.0 0.0 0.7799956852316924 0.0 8 0.0 0.0 0.0 1.04817879827743 0.0 9 0.0 0.0 0.0 1.1744036501509574 0.0 10 0.0 0.0 0.0 1.418271494280548 0.0 11 0.0 0.0 0.0 1.6843091424219199 0.0 12 0.0 0.0 0.0 1.8868171908951237 0.0 13 0.0 0.0 0.0 1.9789529892881705 0.0 14 0.0 0.0 0.0 2.011254155348346 0.0 15 0.0 0.0 0.0 2.0723999051227744 0.0 16 0.0 0.0 0.0 2.2099480439915657 0.0 17 0.0 0.0 0.0 2.3705003343349476 0.0 18 0.0 0.0 0.0 2.6343925175719534 0.0 19 0.0 0.0 0.0 2.734037443130281 0.0 20 0.0 0.0 0.0 2.8495349704819786 0.0 21 0.0 0.0 0.0 2.9633638029080585 0.0 22 0.0 0.0 0.0 3.086132072435663 0.0 23 0.0 0.0 0.0 3.2305933759963 0.0 24 0.0 0.0 0.0 3.3381050062039694 0.0 25 0.0 0.0 0.0 3.420109442548622 0.0 26 0.0 0.0 0.0 3.501756301409213 1.1919249468699455E-4 27 0.0 0.0 0.0 3.5960375647066254 1.1919249468699455E-4 28 0.0 0.0 0.0 3.6898420580252904 1.1919249468699455E-4 29 0.0 0.0 0.0 3.7946122608551587 1.1919249468699455E-4 30 0.0 0.0 0.0 3.9233401551171125 1.1919249468699455E-4 31 0.0 0.0 0.0 4.0363346400803835 1.1919249468699455E-4 32 0.0 0.0 0.0 4.142535152846496 1.1919249468699455E-4 33 0.0 0.0 0.0 4.251119515506348 1.1919249468699455E-4 34 0.0 0.0 0.0 4.3688817002570985 1.1919249468699455E-4 35 0.0 0.0 0.0 4.507144994094012 1.1919249468699455E-4 36 0.0 0.0 0.0 4.636588043324088 1.1919249468699455E-4 37 0.0 0.0 0.0 4.7620977402294935 1.1919249468699455E-4 38 0.0 0.0 0.0 4.879979117474931 1.1919249468699455E-4 39 0.0 0.0 0.0 5.015381791439356 1.1919249468699455E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATCGT 45 3.8380676E-10 45.000004 19 TAAACGG 60 0.0 45.000004 2 CTAAACG 30 2.1647975E-6 45.000004 1 TATAGCG 30 2.1647975E-6 45.000004 1 TTACGAG 75 0.0 45.000004 1 ACGTATG 60 0.0 45.000004 1 AATCGTG 30 2.1647975E-6 45.000004 1 AACGTTC 20 7.032197E-4 45.0 39 CGGCGAT 20 7.032197E-4 45.0 20 CGAAAGG 110 0.0 45.0 2 ACGTTAG 25 3.8899016E-5 45.0 1 TAGGTCG 25 3.8899016E-5 45.0 10 ACCGACG 20 7.032197E-4 45.0 15 GTCTATC 25 3.8899016E-5 45.0 40 TATATCG 20 7.032197E-4 45.0 27 CTAAGCG 55 1.8189894E-12 45.0 1 TCGGCCT 20 7.032197E-4 45.0 15 ATGTACG 35 1.2114106E-7 45.0 1 GTAGCGT 20 7.032197E-4 45.0 1 TACGCGC 25 3.8899016E-5 45.0 1 >>END_MODULE