SRR1546351_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546351_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1465457
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5990	0.40874621363847596	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5016	0.342282305110283	No Hit
GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	2417	0.1649314855365937	No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	2270	0.15490048496817033	No Hit
GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1929	0.13163129317339234	No Hit
GTACGAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1632	0.11136457773923084	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1493	0.10187948196364685	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	40	6.8175723E-9	45.0	1
TAATACG	40	6.8175723E-9	45.0	1
ATCTCGA	20	7.033924E-4	45.0	37
ACACGTA	20	7.033924E-4	45.0	24
CGTTGTA	20	7.033924E-4	45.0	43
GTAATAG	20	7.033924E-4	45.0	2
CTCGGTA	20	7.033924E-4	45.0	17
CATAGAT	20	7.033924E-4	45.0	41
AACGCGT	35	1.2122291E-7	45.0	30
GGTATAC	20	7.033924E-4	45.0	26
CGAATCA	35	1.2122291E-7	45.0	27
GTATCGA	20	7.033924E-4	45.0	28
CGTCGCA	40	6.8175723E-9	45.0	18
ACGAGTT	20	7.033924E-4	45.0	24
TAATGCG	80	0.0	45.0	1
TCGGTAC	50	2.1827873E-11	45.0	36
GCGTAAG	25	3.8913327E-5	45.0	1
AATCGCG	25	3.8913327E-5	45.0	1
TACGTAA	20	7.033924E-4	45.0	40
CTTACGT	20	7.033924E-4	45.0	38