##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546350_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2189777 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.15181363216437 31.0 31.0 33.0 30.0 34.0 2 31.485227947868665 31.0 31.0 34.0 30.0 34.0 3 31.520736129752024 31.0 31.0 34.0 30.0 34.0 4 35.361466943894285 37.0 35.0 37.0 33.0 37.0 5 35.27538648912652 37.0 35.0 37.0 33.0 37.0 6 35.331163858237616 37.0 35.0 37.0 33.0 37.0 7 35.84433940077003 37.0 35.0 37.0 35.0 37.0 8 35.78622983070879 37.0 35.0 37.0 35.0 37.0 9 37.546499483737385 39.0 37.0 39.0 35.0 39.0 10 36.9747901270312 39.0 37.0 39.0 32.0 39.0 11 36.57242906469472 39.0 35.0 39.0 32.0 39.0 12 35.880868691195495 37.0 35.0 39.0 31.0 39.0 13 35.54373299198959 37.0 35.0 39.0 30.0 39.0 14 36.46975513945027 38.0 35.0 41.0 31.0 41.0 15 36.76435271719449 38.0 35.0 41.0 31.0 41.0 16 36.87008129138264 38.0 35.0 41.0 32.0 41.0 17 36.82520229228821 38.0 35.0 41.0 32.0 41.0 18 36.73299975294288 38.0 35.0 40.0 31.0 41.0 19 36.6244334468761 38.0 35.0 40.0 31.0 41.0 20 36.464537256533426 38.0 35.0 40.0 31.0 41.0 21 36.30467988292872 38.0 35.0 40.0 31.0 41.0 22 36.20746770104901 37.0 35.0 40.0 31.0 41.0 23 36.1701072757637 37.0 35.0 40.0 31.0 41.0 24 36.13328343479724 37.0 35.0 40.0 31.0 41.0 25 36.086897432934954 37.0 35.0 40.0 30.0 41.0 26 35.98813075486682 37.0 35.0 40.0 30.0 41.0 27 35.867173689375676 37.0 34.0 40.0 30.0 41.0 28 35.851237820106796 37.0 35.0 40.0 30.0 41.0 29 35.84083310766347 37.0 35.0 40.0 30.0 41.0 30 35.682479083486584 37.0 34.0 40.0 30.0 41.0 31 35.45704014609707 37.0 34.0 40.0 29.0 41.0 32 35.23118016126756 37.0 34.0 40.0 28.0 41.0 33 35.011407554285206 37.0 34.0 40.0 27.0 41.0 34 34.765324962313514 37.0 34.0 40.0 25.0 41.0 35 34.56043332266253 36.0 33.0 40.0 24.0 41.0 36 34.351646309190386 36.0 33.0 40.0 23.0 41.0 37 34.174773504334006 36.0 33.0 40.0 23.0 41.0 38 34.152085805997594 36.0 33.0 40.0 23.0 41.0 39 34.1362581669275 36.0 33.0 40.0 23.0 41.0 40 33.94811754804256 36.0 33.0 40.0 23.0 41.0 41 33.90434505431375 36.0 33.0 40.0 23.0 41.0 42 33.80172181916241 36.0 33.0 40.0 22.0 41.0 43 33.76579806984912 35.0 33.0 40.0 23.0 41.0 44 33.61999052871594 35.0 33.0 40.0 22.0 41.0 45 33.580386952644034 35.0 33.0 40.0 22.0 41.0 46 33.48733866507868 35.0 33.0 40.0 22.0 41.0 47 33.428831337620224 35.0 32.0 40.0 22.0 41.0 48 33.38130503699692 35.0 32.0 40.0 21.0 41.0 49 33.40952206548886 35.0 32.0 40.0 21.0 41.0 50 33.26376932445633 35.0 32.0 39.0 20.0 41.0 51 33.07104193714702 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 1.0 11 3.0 12 4.0 13 7.0 14 20.0 15 76.0 16 230.0 17 614.0 18 1272.0 19 2683.0 20 4502.0 21 7484.0 22 11254.0 23 16318.0 24 23882.0 25 33715.0 26 43893.0 27 49030.0 28 50778.0 29 55520.0 30 64942.0 31 77695.0 32 96228.0 33 123645.0 34 207097.0 35 287769.0 36 152715.0 37 188820.0 38 274574.0 39 414935.0 40 69.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.21026615952218 23.309953479281223 29.7103312346417 14.769449126554896 2 31.66993716711793 24.827779267021256 30.255957570108738 13.246325995752079 3 27.82333543552608 24.93820146983003 34.43076623784066 12.807696856803227 4 24.55213476075418 28.033722155269693 33.63648444567644 13.7776586382997 5 22.130426979550887 32.34137540032615 32.130806013580376 13.397391606542582 6 19.26465571608433 41.47408617407161 28.704886387974664 10.556371721869395 7 87.35990011768322 3.5799079084308585 7.729554196614541 1.3306377772713842 8 88.92942066703597 2.296626551470766 7.072044322321405 1.7019084591718698 9 84.53988693825902 4.528406317172936 8.728194697450927 2.2035120471171266 10 47.920404680476594 30.44004024154058 13.05219663920116 8.587358438781665 11 38.41687989233607 21.93428828597615 26.380722785927517 13.268109035760261 12 37.10898415683423 21.841310781874135 26.993296577688046 14.05640848360358 13 21.323723831239434 37.97341007782985 26.793139210065682 13.909726880865037 14 15.603552325191103 39.84232184373112 28.623188571256343 15.930937259821434 15 14.187152390403224 24.53560339705824 46.4505289808049 14.826715231733642 16 15.640999060634941 20.7838515063406 44.84095869122746 18.734190741796997 17 16.374224407325492 21.01451426332453 30.84793565737516 31.76332567197482 18 20.775448824241007 23.92563261007856 35.7098919205015 19.58902664517894 19 25.53291956212893 25.34472688314838 28.365354097700358 20.756999457022335 20 28.97678622069736 23.244604359256673 27.95677368060766 19.82183573943831 21 21.47615944454618 28.03111915048884 29.726588597834393 20.76613280713059 22 22.35971973401858 24.624607893863164 28.226253175551662 24.78941919656659 23 18.609383512567717 30.039771173046386 26.932377132466 24.418468181919895 24 19.3205061519963 25.16114654597249 38.07985927334153 17.43848802868968 25 16.943871453577238 26.66993031710535 35.23833705441239 21.147861174905024 26 17.373275908916753 32.25104656775553 29.177628589577843 21.198048933749874 27 17.728106560622383 31.862148520146118 30.32354436090981 20.086200558321693 28 14.520245668851212 28.84809731767207 38.26722995081234 18.364427062664372 29 16.077253528555644 23.65414377811074 37.75708668051587 22.511516012817744 30 18.881740012795824 28.583367164784356 33.50144786432591 19.033444958093906 31 25.595894011125335 26.896437399790024 27.04617867481483 20.46148991426981 32 26.323228346996064 27.014257616186487 27.504033515741554 19.15848052107589 33 25.8647798383123 28.640587603212563 26.65522562343106 18.83940693504407 34 19.810601718805156 27.088466085816044 30.621519908191562 22.479412287187234 35 20.091223900881232 26.974847210469378 31.098463450844537 21.835465437804853 36 27.289217121195446 25.81020807141549 28.15355170868997 18.747023098699092 37 20.555746087386982 30.63960394140591 30.255592236104405 18.549057735102707 38 20.564879437495236 30.6307445918009 27.603906699175308 21.20046927152856 39 20.275854573319567 31.265603757825566 28.29096296106864 20.167578707786227 40 22.925667773476476 27.159340882656085 27.6491624489617 22.265828894905738 41 17.88067917418075 25.71992490559541 28.75909282086715 27.640303099356693 42 21.828250091219335 26.535944071017276 25.83769945524133 25.798106382522057 43 21.634212068169496 28.274522930873786 27.14139384969337 22.94987115126335 44 19.905040558924494 30.350670410731322 28.198350790970956 21.545938239373232 45 18.4275385119124 34.014559473407566 24.71753973121464 22.840362283465392 46 21.815235067315072 31.530151243711117 27.204276965188694 19.450336723785117 47 20.994238226084207 28.262329908479266 28.193510115413577 22.549921750022946 48 21.966483345107743 24.47139594579722 30.50516102781242 23.056959681282617 49 20.73978309206828 24.5240497091713 31.41877003914097 23.31739715961945 50 18.67971030840127 30.807200915892345 29.039486669190516 21.47360210651587 51 18.653771594093826 31.49434851128677 26.01959012264719 23.832289771972214 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 763.0 1 1281.5 2 1800.0 3 10516.5 4 19233.0 5 14729.0 6 10225.0 7 10627.5 8 11030.0 9 11684.0 10 12338.0 11 12374.5 12 12411.0 13 12357.5 14 12304.0 15 11547.5 16 10791.0 17 10026.5 18 9262.0 19 9328.5 20 9395.0 21 9161.0 22 8927.0 23 9100.5 24 9274.0 25 11059.5 26 16066.5 27 19288.0 28 23480.5 29 27673.0 30 31452.0 31 35231.0 32 45665.5 33 56100.0 34 66745.0 35 77390.0 36 78590.0 37 79790.0 38 94862.0 39 109934.0 40 135198.0 41 160462.0 42 184688.5 43 208915.0 44 210168.5 45 211422.0 46 207724.0 47 204026.0 48 193249.0 49 182472.0 50 172047.0 51 161622.0 52 150019.0 53 138416.0 54 118851.5 55 99287.0 56 87364.5 57 75442.0 58 68313.5 59 61185.0 60 57014.5 61 52844.0 62 43617.0 63 34390.0 64 28632.0 65 22874.0 66 17147.5 67 11421.0 68 9524.0 69 7627.0 70 5873.0 71 4119.0 72 3419.5 73 2720.0 74 2344.0 75 1691.0 76 1414.0 77 1039.0 78 664.0 79 460.5 80 257.0 81 171.0 82 85.0 83 68.0 84 51.0 85 54.5 86 58.0 87 39.5 88 21.0 89 13.0 90 5.0 91 3.0 92 1.0 93 2.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2189777.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.928548352098904 #Duplication Level Percentage of deduplicated Percentage of total 1 80.68475427126691 16.07930026772161 2 7.797405104458023 3.10781929290189 3 2.618118634975675 1.5652591142593177 4 1.300457797166379 1.0366494436277687 5 0.7836259629637872 0.7808263946441948 6 0.530765385895465 0.6346430193862924 7 0.4159837104266451 0.5802966040846035 8 0.3312969869039703 0.528181441793636 9 0.26697312014179553 0.4788348060110834 >10 3.0140418863736156 13.87277400836192 >50 0.9667935255606672 13.951402781500729 >100 1.27989051803057 45.25432575734575 >500 0.00805251986691897 0.9648675895410938 >1k 0.001380431977186109 0.4430944870426311 >5k 2.3007199619768485E-4 0.23209274559290138 >10k+ 2.3007199619768485E-4 0.4896322461846293 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10679 0.48767522903017063 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5062 0.23116509123988424 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 3391 0.15485595108543018 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08032781420208542 0.0 2 0.0 0.0 0.0 0.27468550450570994 0.0 3 0.0 0.0 0.0 0.38373770479825114 0.0 4 0.0 0.0 0.0 0.5514260127857769 0.0 5 0.0 0.0 0.0 0.8936526413420179 0.0 6 0.0 0.0 0.0 1.2341896001282322 0.0 7 0.0 0.0 0.0 1.4685056971554638 0.0 8 0.0 0.0 0.0 2.1575256293220724 0.0 9 0.0 0.0 0.0 2.464132192456127 0.0 10 0.0 0.0 0.0 2.9676994506746577 0.0 11 0.0 0.0 0.0 3.3467334801671584 0.0 12 0.0 0.0 0.0 3.7052631386666315 0.0 13 0.0 0.0 0.0 3.840756387522565 0.0 14 0.0 0.0 0.0 3.8914464806233693 0.0 15 0.0 0.0 0.0 3.9699932915543457 0.0 16 0.0 0.0 0.0 4.153664962231314 0.0 17 0.0 0.0 0.0 4.3925020675621305 0.0 18 0.0 0.0 0.0 4.749342056291577 0.0 19 0.0 0.0 0.0 4.891867984730865 0.0 20 0.0 0.0 0.0 5.054258949655604 0.0 21 0.0 0.0 0.0 5.243090963143736 0.0 22 0.0 0.0 0.0 5.4470386710610255 0.0 23 0.0 0.0 0.0 5.682770437355036 0.0 24 0.0 0.0 0.0 5.853518417628827 0.0 25 0.0 0.0 0.0 5.990610002753705 0.0 26 0.0 0.0 0.0 6.128021255132372 0.0 27 0.0 0.0 0.0 6.268857513801634 0.0 28 0.0 0.0 0.0 6.410926774735509 0.0 29 0.0 0.0 0.0 6.567472395590967 0.0 30 0.0 0.0 0.0 6.7874491329482405 0.0 31 0.0 0.0 0.0 6.9577404457166185 0.0 32 0.0 0.0 0.0 7.119948743639193 0.0 33 0.0 0.0 0.0 7.290833724164607 0.0 34 0.0 0.0 0.0 7.463088707206259 0.0 35 0.0 0.0 0.0 7.6866274511057515 0.0 36 0.0 0.0 0.0 7.870253455032179 0.0 37 0.0 0.0 0.0 8.05652813049 0.0 38 0.0 0.0 0.0 8.249972485782799 0.0 39 0.0 0.0 0.0 8.450586520910576 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTTGA 45 3.8562575E-10 45.000004 39 CGGTCTA 125 0.0 45.000004 31 TCGCGAG 65 0.0 45.000004 1 ACGCGAA 20 7.0346874E-4 45.0 27 GTCGACT 40 6.8193913E-9 45.0 35 CGGCATA 25 3.8919672E-5 45.0 26 TGAACGT 35 1.2126111E-7 45.0 36 CGACCGG 25 3.8919672E-5 45.0 32 CGCGATA 25 3.8919672E-5 45.0 38 CGTAGAC 25 3.8919672E-5 45.0 40 ACGTGCG 25 3.8919672E-5 45.0 1 GTATCGA 20 7.0346874E-4 45.0 29 CGTAACG 20 7.0346874E-4 45.0 2 CACGTCA 20 7.0346874E-4 45.0 44 GGTTACG 35 1.2126111E-7 45.0 1 AATCGCG 25 3.8919672E-5 45.0 1 CGTTTTT 10840 0.0 43.48478 1 ACGGTCT 150 0.0 42.000004 30 CGTAAGG 430 0.0 41.337208 2 TTCGCGA 60 3.6379788E-12 41.249996 14 >>END_MODULE