##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546349_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1620473 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.086543867130153 31.0 31.0 33.0 30.0 34.0 2 31.407142852734975 31.0 31.0 34.0 30.0 34.0 3 31.49429703549519 31.0 31.0 34.0 30.0 34.0 4 35.35256681228259 37.0 35.0 37.0 33.0 37.0 5 35.25455036893549 37.0 35.0 37.0 33.0 37.0 6 35.29962054289087 37.0 35.0 37.0 32.0 37.0 7 35.74527005386699 37.0 35.0 37.0 35.0 37.0 8 35.654918039362585 37.0 35.0 37.0 35.0 37.0 9 37.407232332781845 39.0 37.0 39.0 35.0 39.0 10 36.86635753881737 39.0 37.0 39.0 32.0 39.0 11 36.55168336652323 39.0 35.0 39.0 32.0 39.0 12 35.8883017489338 37.0 35.0 39.0 31.0 39.0 13 35.58057307958849 37.0 35.0 39.0 30.0 39.0 14 36.38073636524644 38.0 35.0 41.0 30.0 41.0 15 36.67480482550465 38.0 35.0 41.0 31.0 41.0 16 36.763584459599144 38.0 35.0 41.0 31.0 41.0 17 36.703004616553315 38.0 35.0 40.0 31.0 41.0 18 36.637428701373 38.0 35.0 40.0 31.0 41.0 19 36.525619988731684 38.0 35.0 40.0 31.0 41.0 20 36.34377925457567 38.0 35.0 40.0 31.0 41.0 21 36.2091636207453 38.0 35.0 40.0 30.0 41.0 22 36.120858539451135 38.0 34.0 40.0 30.0 41.0 23 36.066479355101876 38.0 34.0 40.0 30.0 41.0 24 36.05148620186822 38.0 34.0 40.0 30.0 41.0 25 35.96374823894011 37.0 34.0 40.0 30.0 41.0 26 35.859339834727265 37.0 34.0 40.0 30.0 41.0 27 35.74484980619856 37.0 34.0 40.0 30.0 41.0 28 35.68850576344067 37.0 34.0 40.0 29.0 41.0 29 35.58086743808752 37.0 34.0 40.0 29.0 41.0 30 35.380390787134374 37.0 34.0 40.0 29.0 41.0 31 35.150790540786545 37.0 34.0 40.0 27.0 41.0 32 34.99254415223209 37.0 34.0 40.0 27.0 41.0 33 34.77603576239777 37.0 33.0 40.0 25.0 41.0 34 34.50821334264749 36.0 33.0 40.0 24.0 41.0 35 34.31116902287172 36.0 33.0 40.0 23.0 41.0 36 34.108389340643136 36.0 33.0 40.0 23.0 41.0 37 33.897811318053435 36.0 33.0 40.0 23.0 41.0 38 33.78446416570964 35.0 33.0 40.0 23.0 41.0 39 33.71993547562965 36.0 33.0 40.0 22.0 41.0 40 33.46780045085602 35.0 32.0 40.0 21.0 41.0 41 33.36371726033078 35.0 32.0 40.0 21.0 41.0 42 33.24575540598332 35.0 32.0 40.0 20.0 41.0 43 33.193631735919084 35.0 32.0 40.0 21.0 41.0 44 33.0235783009035 35.0 31.0 39.0 20.0 41.0 45 32.99413998258533 35.0 31.0 39.0 20.0 41.0 46 32.916113381710154 35.0 31.0 39.0 20.0 41.0 47 32.82177981367169 35.0 31.0 39.0 20.0 41.0 48 32.71973059717749 35.0 31.0 39.0 20.0 41.0 49 32.694394167628836 35.0 31.0 39.0 20.0 41.0 50 32.552649751029485 35.0 31.0 39.0 19.0 40.0 51 32.35144121500328 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 4.0 12 5.0 13 12.0 14 39.0 15 102.0 16 233.0 17 637.0 18 1323.0 19 2590.0 20 4516.0 21 6823.0 22 10023.0 23 14232.0 24 19090.0 25 26111.0 26 33385.0 27 38185.0 28 41047.0 29 45661.0 30 52477.0 31 62353.0 32 74866.0 33 95472.0 34 152458.0 35 192775.0 36 125196.0 37 155604.0 38 205658.0 39 259550.0 40 43.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.524857865573814 22.87406207940521 28.903597900119287 13.697482154901685 2 32.07378339534198 24.659960394279942 30.609704697332198 12.656551513045883 3 29.916203478860805 25.30514238743873 31.23581818394999 13.542835949750472 4 26.099354941427595 27.13362086255063 31.055315330770703 15.711708865251072 5 22.455665722292196 32.6212778614639 30.243762160801197 14.679294255442702 6 20.837434502148447 41.299731621569755 27.511843764135534 10.350990112146269 7 86.77898366711447 4.227160835138876 7.279479509994921 1.7143759877517244 8 88.0031324187444 3.1218662699100816 6.882558364131953 1.9924429472135605 9 83.81583648724786 4.570332242499567 8.58952910662504 3.0243021636275333 10 48.402410901014704 24.25501689938678 14.345934798049706 12.996637401548808 11 40.13235641692272 22.250046745610696 21.69002507292624 15.927571764540355 12 36.75247906012627 19.767006300012405 27.58083596579517 15.899678674066154 13 25.418566060650193 29.927496477880222 27.472966226527685 17.180971234941897 14 19.34077272500066 33.92157721850349 29.69386098997021 17.04378906652564 15 17.7235288708914 22.56828716060064 42.36355681335018 17.344627155157784 16 21.74803282745223 17.48514168394043 39.34561081856964 21.4212146700377 17 21.031760479810522 18.523418779578556 29.248250356531702 31.196570384079216 18 24.886560899194247 21.58573453553376 32.23836497121519 21.2893395940568 19 29.264603606477863 24.14239546107834 25.215477209432063 21.377523723011738 20 30.035119375639084 23.73695828316794 24.314999385981746 21.912922955211226 21 25.769512975532454 25.01263519972255 28.5250664466486 20.692785378096396 22 24.681065343267058 22.334034568919076 26.531697843777714 26.453202244036156 23 22.886650996344894 26.78390815521147 25.61048533360321 24.71895551484042 24 23.062278729728913 24.536416219215006 32.44484789317687 19.95645715787921 25 22.733547550622564 22.71700916954494 30.497206679778067 24.052236600054428 26 20.69877128468046 27.34627482222783 26.383099255587723 25.57185463750399 27 20.657610463117866 27.192060589716704 29.079534185389083 23.070794761776344 28 18.694418234675926 26.07664552263444 33.405184782467835 21.8237514602218 29 20.725553588365866 24.482481349581263 32.1617206827883 22.63024437926457 30 23.134665002132092 25.763280227439765 30.458637694055994 20.643417076372145 31 28.80813194666002 24.359677699042194 25.216896548106632 21.615293806191154 32 29.72872735306296 24.767891843924584 25.438683643602822 20.06469715940963 33 28.15727259880294 24.791958891015152 25.574076211081582 21.476692299100325 34 22.325703668003108 25.484040770811976 29.239796034861428 22.95045952632349 35 22.432339199727487 25.46201016616753 28.959322370690533 23.146328263414446 36 29.552050543267306 25.05669640901144 25.151977231339245 20.23927581638201 37 23.297642108199273 29.10508228153138 26.296951569078903 21.300324041190443 38 23.681850916368248 29.31428046008789 23.764913084019295 23.23895553952457 39 23.284497797865193 26.72429593087944 25.27027602434598 24.72093024690939 40 25.01183296481953 23.94547764757574 25.385612719249256 25.657076668355472 41 21.429298729445044 22.854499889846977 26.231415148539966 29.484786232168013 42 23.23728935934138 24.886314057685627 24.407564951714715 27.46883163125828 43 22.497628778757807 25.669110191900764 25.977970629563096 25.855290399778337 44 22.516327023035867 26.31046614167592 26.715965029963474 24.457241805324742 45 20.93925662445471 29.097368484386966 24.947160489560762 25.01621440159756 46 23.34336949767136 27.286909439404422 26.878818715276342 22.49090234764788 47 23.15323982565584 26.06072424532837 27.316530420438973 23.469505508576816 48 23.23438897161508 24.767213029775874 28.47489591002133 23.523502088587716 49 23.069066871215995 22.797417790978315 30.112565898969006 24.020949438836688 50 21.93106580609489 26.59871531336838 27.792749400946516 23.67746947959022 51 21.60153239208552 28.346785167046907 25.731190831319005 24.32049160954857 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 716.0 1 1394.0 2 2072.0 3 8394.0 4 14716.0 5 10723.5 6 6731.0 7 6802.5 8 6874.0 9 7190.0 10 7506.0 11 7435.5 12 7365.0 13 7171.0 14 6977.0 15 6556.5 16 6136.0 17 5948.0 18 5760.0 19 5764.0 20 5768.0 21 5671.0 22 5574.0 23 5596.0 24 5618.0 25 5758.5 26 7016.5 27 8134.0 28 10382.5 29 12631.0 30 15162.0 31 17693.0 32 20079.0 33 22465.0 34 26667.5 35 30870.0 36 32880.5 37 34891.0 38 40189.0 39 45487.0 40 60598.0 41 75709.0 42 92610.5 43 109512.0 44 113420.0 45 117328.0 46 122885.5 47 128443.0 48 127511.5 49 126580.0 50 126032.5 51 125485.0 52 119662.5 53 113840.0 54 106560.5 55 99281.0 56 97821.0 57 96361.0 58 93865.0 59 91369.0 60 84217.5 61 77066.0 62 69616.5 63 62167.0 64 54393.0 65 46619.0 66 38823.0 67 31027.0 68 25941.0 69 20855.0 70 18762.5 71 16670.0 72 13517.0 73 10364.0 74 7776.0 75 4160.0 76 3132.0 77 2378.5 78 1625.0 79 1255.0 80 885.0 81 715.5 82 546.0 83 438.5 84 331.0 85 217.5 86 104.0 87 75.5 88 47.0 89 40.5 90 34.0 91 23.5 92 13.0 93 9.0 94 5.0 95 3.5 96 2.0 97 2.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1620473.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.81896661162019 #Duplication Level Percentage of deduplicated Percentage of total 1 80.69670051207719 18.414153146530033 2 6.450949807593914 2.944080165454465 3 2.2891574371160983 1.5670862137888288 4 1.3153722355900366 1.2006174050312501 5 0.8791552239129332 1.003070685045035 6 0.670533389296205 0.9180527413395976 7 0.505522104382381 0.8074844414936269 8 0.4135893432283502 0.7550145131239718 9 0.35190334909337445 0.7227063696131133 >10 4.279868231158276 22.799325016903325 >50 1.357960938780081 22.328600798055355 >100 0.7819515377378776 24.3105087328688 >500 0.004347194093807842 0.6891814181295918 >1k 0.0027169963086299013 1.046667929188896 >5k 2.7169963086299013E-4 0.49345042343409695 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7959 0.4911528917791287 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4140 0.2554809614229919 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 1836 0.11330025245715293 No Hit GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 1756 0.10836342228472796 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07022640920274513 0.0 2 0.0 0.0 0.0 0.21635658230652408 0.0 3 0.0 0.0 0.0 0.3079347820050072 0.0 4 0.0 0.0 0.0 0.43277487499020345 0.0 5 0.0 0.0 0.0 0.6893049128248357 0.0 6 0.0 0.0 0.0 0.9666313477608081 0.0 7 0.0 0.0 0.0 1.1496026160263084 0.0 8 0.0 0.0 0.0 1.6185397720295247 0.0 9 0.0 0.0 0.0 1.841499364691667 0.0 10 0.0 0.0 0.0 2.22373344079167 0.0 11 0.0 0.0 0.0 2.5376541293807424 0.0 12 0.0 0.0 0.0 2.8346661746292594 0.0 13 0.0 0.0 0.0 2.9564824591338454 0.0 14 0.0 0.0 0.0 3.0047399740692997 0.0 15 0.0 0.0 0.0 3.0808905794789547 0.0 16 0.0 0.0 0.0 3.2326981072810224 0.0 17 0.0 0.0 0.0 3.4280114509775848 0.0 18 0.0 0.0 0.0 3.7373655716571643 0.0 19 0.0 0.0 0.0 3.863069609922535 0.0 20 0.0 0.0 0.0 4.0054354500198395 0.0 21 0.0 0.0 0.0 4.1681657145783975 0.0 22 0.0 0.0 0.0 4.333672946108945 0.0 23 0.0 0.0 0.0 4.515903689848582 0.0 24 0.0 0.0 0.0 4.65413493467648 0.0 25 0.0 0.0 0.0 4.761387570172412 0.0 26 0.0 0.0 0.0 4.876354002812759 0.0 27 0.0 0.0 0.0 5.009956969354009 0.0 28 0.0 0.0 0.0 5.133007461401702 0.0 29 6.171037715531206E-5 0.0 0.0 5.277348033567977 0.0 30 6.171037715531206E-5 0.0 0.0 5.454950499020965 0.0 31 6.171037715531206E-5 0.0 0.0 5.6126822230299425 0.0 32 6.171037715531206E-5 0.0 0.0 5.758380423493635 0.0 33 6.171037715531206E-5 0.0 0.0 5.909941109787081 0.0 34 6.171037715531206E-5 0.0 0.0 6.069709276242183 0.0 35 6.171037715531206E-5 0.0 0.0 6.26471406805297 0.0 36 6.171037715531206E-5 0.0 0.0 6.420471059992978 0.0 37 6.171037715531206E-5 0.0 0.0 6.584435532094641 0.0 38 6.171037715531206E-5 0.0 0.0 6.7838217606834545 0.0 39 6.171037715531206E-5 0.0 0.0 7.1068755850915135 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGA 20 7.034142E-4 45.000004 18 TACCCGA 20 7.034142E-4 45.000004 32 TTATACG 30 2.1660544E-6 45.000004 1 AATGCGC 25 3.891517E-5 45.0 11 TATTACG 35 1.2123382E-7 45.0 1 TCGACTA 25 3.891517E-5 45.0 2 CAATACG 25 3.891517E-5 45.0 1 TAATGCG 25 3.891517E-5 45.0 1 CGTTTTT 6200 0.0 43.1129 1 CGGTCTA 290 0.0 42.672413 31 ACGTATA 85 0.0 42.352943 13 ATTTACG 80 0.0 42.187504 1 TACGACG 70 0.0 41.785713 1 TCGATAG 130 0.0 41.538464 1 TCACGAC 310 0.0 41.370968 25 CGACGGT 305 0.0 41.311478 28 ACTTACG 55 6.184564E-11 40.909092 1 TAATACG 50 1.0822987E-9 40.5 1 GTTTACG 50 1.0822987E-9 40.5 1 GTACGTA 90 0.0 40.0 11 >>END_MODULE