##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546348_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2049608 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.1982910878568 31.0 31.0 33.0 30.0 34.0 2 31.531427960858856 31.0 31.0 34.0 30.0 34.0 3 31.601780925913637 31.0 31.0 34.0 30.0 34.0 4 35.452190370061004 37.0 35.0 37.0 33.0 37.0 5 35.37800691644451 37.0 35.0 37.0 33.0 37.0 6 35.41059168387321 37.0 35.0 37.0 33.0 37.0 7 35.8167815504233 37.0 35.0 37.0 35.0 37.0 8 35.72543188746336 37.0 35.0 37.0 35.0 37.0 9 37.49565429096686 39.0 37.0 39.0 35.0 39.0 10 36.99902469155077 39.0 37.0 39.0 33.0 39.0 11 36.69032078329124 39.0 35.0 39.0 32.0 39.0 12 35.947649501758384 37.0 35.0 39.0 32.0 39.0 13 35.61684429412844 37.0 35.0 39.0 31.0 39.0 14 36.52464080936452 38.0 35.0 41.0 31.0 41.0 15 36.780378979785404 38.0 35.0 41.0 31.0 41.0 16 36.872692241638404 38.0 35.0 41.0 32.0 41.0 17 36.80828577952467 38.0 35.0 41.0 32.0 41.0 18 36.72631107997236 38.0 35.0 40.0 31.0 41.0 19 36.61568358437321 38.0 35.0 40.0 31.0 41.0 20 36.484338468624244 38.0 35.0 40.0 31.0 41.0 21 36.31312085042603 38.0 35.0 40.0 31.0 41.0 22 36.196685902865326 38.0 35.0 40.0 30.0 41.0 23 36.138183496551534 37.0 35.0 40.0 30.0 41.0 24 36.13749995121018 37.0 35.0 40.0 31.0 41.0 25 36.09045241821851 37.0 35.0 40.0 30.0 41.0 26 35.97265867424405 37.0 35.0 40.0 30.0 41.0 27 35.85122764938466 37.0 34.0 40.0 30.0 41.0 28 35.80123321142384 37.0 34.0 40.0 30.0 41.0 29 35.71967420111553 37.0 34.0 40.0 30.0 41.0 30 35.56031202064005 37.0 34.0 40.0 29.0 41.0 31 35.34856762854165 37.0 34.0 40.0 29.0 41.0 32 35.14862549326505 36.0 34.0 40.0 27.0 41.0 33 34.964963056350285 36.0 34.0 40.0 27.0 41.0 34 34.742355611414474 36.0 34.0 40.0 25.0 41.0 35 34.56379414990574 36.0 33.0 40.0 25.0 41.0 36 34.35153746472496 36.0 33.0 40.0 24.0 41.0 37 34.17972753814388 36.0 33.0 40.0 23.0 41.0 38 34.081402394994555 35.0 33.0 40.0 23.0 41.0 39 34.05251687151885 36.0 33.0 40.0 23.0 41.0 40 33.8247177021167 35.0 33.0 40.0 23.0 41.0 41 33.737124855094244 35.0 33.0 40.0 23.0 41.0 42 33.604122349249224 35.0 33.0 40.0 22.0 41.0 43 33.5505086826359 35.0 33.0 40.0 23.0 41.0 44 33.368384588662806 35.0 32.0 39.0 22.0 41.0 45 33.32820666195682 35.0 32.0 39.0 22.0 41.0 46 33.234610227907 35.0 32.0 39.0 22.0 41.0 47 33.15775894707671 35.0 32.0 39.0 22.0 41.0 48 33.064082985624566 35.0 32.0 39.0 21.0 41.0 49 33.0535863443156 35.0 32.0 39.0 21.0 41.0 50 32.908961616074876 35.0 32.0 39.0 20.0 40.0 51 32.70483380236611 35.0 31.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 5.0 11 7.0 12 9.0 13 27.0 14 34.0 15 105.0 16 237.0 17 579.0 18 1273.0 19 2514.0 20 4343.0 21 6853.0 22 10486.0 23 15063.0 24 20924.0 25 29319.0 26 38188.0 27 44195.0 28 48421.0 29 53474.0 30 61905.0 31 75113.0 32 92705.0 33 120172.0 34 202979.0 35 271641.0 36 157101.0 37 194783.0 38 261878.0 39 335219.0 40 55.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.445216841464315 23.675063719501484 27.049318698990245 13.830400740043949 2 33.48147548214098 24.425109581929814 29.030965921288367 13.062449014640848 3 29.885714731792618 24.42676843572039 31.60506789590985 14.08244893657714 4 26.180469631266078 27.358450981846282 30.726753603615908 15.734325783271727 5 22.65750328843369 32.07989039855426 30.239831226263753 15.022775086748293 6 20.947273820164636 40.98330022131061 27.314198617491737 10.755227341033018 7 86.15344983040659 4.572679263546981 7.336671207372336 1.9371996986740878 8 87.67393569892388 3.4082614821956203 6.88243800765805 2.035364811222439 9 83.59403359081347 4.661379151525559 8.648775765902553 3.095811491758424 10 50.60372520013583 21.50264831128684 14.307906682643706 13.585719805933621 11 43.557109457027885 20.82266462660177 20.168539545122773 15.451686371247575 12 37.53825121681805 20.63731211041331 26.182567593412987 15.641869079355661 13 24.70521192345073 32.42981096873158 27.036974875195646 15.828002232622044 14 19.412834063879533 36.03474420474549 28.376060202731452 16.176361528643525 15 17.41445193422352 21.820367601999994 44.0429584583979 16.72222200537859 16 19.575694474260445 17.84258258164488 41.440899918423426 21.140823025671253 17 20.648582558225765 18.0609658041928 28.611519861358854 32.678931776222576 18 23.8207013243508 22.001914512433597 32.70298515618597 21.47439900702964 19 29.493590969590283 23.624419889071472 25.663931834770352 21.21805730656789 20 31.23075241704755 22.476444276173783 23.91154796429366 22.381255342485 21 26.00380170256947 25.194281052767163 27.45032220795391 21.35159503670946 22 24.53957049347973 22.857297590563658 25.45803880546914 27.145093110487466 23 22.76615821171658 27.47618081115999 24.56996654970121 25.18769442742222 24 22.982736211021816 23.475806105362587 33.72313144757437 19.818326236041234 25 22.336905398495713 22.268453284725666 32.43244561886956 22.962195697909063 26 20.133166927529555 28.836489709251723 26.7499443796082 24.280398983610525 27 20.845839789852498 27.91255693771687 28.446122380474705 22.795480891955926 28 19.104336048649305 25.455892053504865 34.92194605017154 20.51782584767429 29 20.214255603998424 23.706581941522476 33.70263972427898 22.376522730200115 30 22.49469166787015 26.050054449436182 30.56301497652234 20.892238906171325 31 30.2430025643928 24.083239331618532 24.102852838201255 21.57090526578741 32 29.75017661913888 24.719263390853275 25.61387348214878 19.916686507859062 33 29.215976908755238 24.674620707959765 25.179351368651957 20.93005101463304 34 22.752009164679297 26.381922787186625 27.926852354206268 22.939215693927814 35 23.347684044949084 24.246246111451555 29.27740328882401 23.12866655477535 36 30.78500864555564 24.579236615001506 24.863827619720453 19.771927119722406 37 24.469459525919103 28.425728236814063 26.39426661098122 20.71054562628561 38 24.244636047478345 30.1895777143727 22.942045503335272 22.623740734813683 39 23.689895823981953 28.078832635313677 24.839139972131257 23.392131568573113 40 25.18701136997904 24.061283913802054 25.736775032103697 25.014929684115206 41 21.38535759032947 23.375055132493628 25.92422551043907 29.315361766737837 42 23.81367559064953 25.125584989910266 24.17413476137876 26.88660465806144 43 23.712387929789504 25.445353452952958 24.97565388113239 25.866604736125154 44 22.50479116006573 27.00940862838162 27.263457207426985 23.22234300412567 45 22.17360587975847 30.00251755457629 24.303476567226515 23.520399998438727 46 24.48321825441743 28.31160885398574 26.147487714723987 21.057685176872845 47 24.29737784005527 26.02219546371794 26.446276556297594 23.234150139929195 48 24.201847377644896 24.490585516840294 27.843665715590493 23.463901389924317 49 23.365882646828076 22.79250471309636 30.206995679173776 23.63461696090179 50 21.99771858813978 27.838298835679797 26.873870515727887 23.290112060452536 51 21.287241267598485 29.632007681468846 25.23394717428894 23.84680387664373 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 673.0 1 1649.5 2 2626.0 3 10529.0 4 18432.0 5 13477.0 6 8522.0 7 8833.0 8 9144.0 9 9395.5 10 9647.0 11 9592.0 12 9537.0 13 9097.5 14 8658.0 15 8325.5 16 7993.0 17 7409.5 18 6826.0 19 6792.5 20 6759.0 21 6763.5 22 6768.0 23 6369.0 24 5970.0 25 6186.5 26 8092.5 27 9782.0 28 10740.5 29 11699.0 30 15706.0 31 19713.0 32 23131.5 33 26550.0 34 30469.0 35 34388.0 36 37426.0 37 40464.0 38 49798.0 39 59132.0 40 80738.0 41 102344.0 42 127616.0 43 152888.0 44 156695.0 45 160502.0 46 163232.5 47 165963.0 48 161347.0 49 156731.0 50 155885.0 51 155039.0 52 150692.0 53 146345.0 54 133195.0 55 120045.0 56 116860.0 57 113675.0 58 110422.0 59 107169.0 60 98704.0 61 90239.0 62 84895.0 63 79551.0 64 71028.0 65 62505.0 66 54171.0 67 45837.0 68 38544.0 69 31251.0 70 25430.0 71 19609.0 72 16702.5 73 13796.0 74 10767.0 75 5944.5 76 4151.0 77 3260.5 78 2370.0 79 1708.0 80 1046.0 81 810.0 82 574.0 83 389.5 84 205.0 85 201.0 86 197.0 87 138.0 88 79.0 89 66.0 90 53.0 91 32.0 92 11.0 93 8.5 94 6.0 95 4.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2049608.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.963868568164248 #Duplication Level Percentage of deduplicated Percentage of total 1 80.67624858538561 15.299337747457997 2 6.8349074812535076 2.5923257430010813 3 2.3154464224990385 1.3172946489869362 4 1.18705448147676 0.9004458067990257 5 0.7618202445198239 0.7223529494820344 6 0.5794583680356753 0.6593263399290896 7 0.501482462735852 0.6657033258793416 8 0.3712965362414887 0.563297497047858 9 0.32924857118797585 0.561944396723818 >10 3.8269475659069094 16.829263125058443 >50 1.2522242225711724 17.25127439430359 >100 1.3543022370496312 40.360780386565274 >500 0.0064613656327899335 0.8026858265244902 >1k 0.0028430008784275707 0.9965812365343139 >5k 2.5845462531159735E-4 0.4773865757066944 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9740 0.4752128211833678 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4440 0.21662678912260294 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2086 0.10177555903372743 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05381516855906105 0.0 2 0.0 0.0 0.0 0.16827608010897693 0.0 3 0.0 0.0 0.0 0.24160717561602024 0.0 4 0.0 0.0 0.0 0.35855636785180384 0.0 5 0.0 0.0 0.0 0.5964067275303375 0.0 6 0.0 0.0 0.0 0.8454787452039609 0.0 7 0.0 0.0 0.0 0.9980932939371822 0.0 8 0.0 0.0 0.0 1.4407633069347894 0.0 9 0.0 0.0 0.0 1.6451926417149034 0.0 10 0.0 0.0 0.0 2.0012119390634697 0.0 11 0.0 0.0 0.0 2.263603576879091 0.0 12 0.0 0.0 0.0 2.5138465501695935 0.0 13 0.0 0.0 0.0 2.6136705165085226 0.0 14 0.0 0.0 0.0 2.651775363874458 0.0 15 0.0 0.0 0.0 2.709054609466786 0.0 16 0.0 0.0 0.0 2.846495524997951 0.0 17 0.0 0.0 0.0 2.999354022818022 0.0 18 0.0 0.0 0.0 3.239546293730313 0.0 19 0.0 0.0 0.0 3.3369307692007446 0.0 20 0.0 0.0 0.0 3.4503670945858915 0.0 21 0.0 0.0 0.0 3.579562530981534 0.0 22 0.0 0.0 0.0 3.702610450388562 0.0 23 0.0 0.0 0.0 3.8527855082532856 0.0 24 0.0 0.0 0.0 3.9558783923560017 0.0 25 0.0 0.0 0.0 4.0431633756308525 0.0 26 0.0 0.0 0.0 4.129911670914633 0.0 27 0.0 0.0 0.0 4.220611941405381 0.0 28 0.0 0.0 0.0 4.315264187103095 0.0 29 0.0 0.0 0.0 4.412599872756156 0.0 30 0.0 0.0 0.0 4.544381169472406 0.0 31 0.0 0.0 0.0 4.652889723303188 0.0 32 0.0 0.0 0.0 4.758958786265471 0.0 33 0.0 0.0 0.0 4.868491926261021 0.0 34 0.0 0.0 0.0 4.986953602835274 0.0 35 0.0 0.0 0.0 5.1252239452617285 0.0 36 0.0 0.0 0.0 5.246613010878177 0.0 37 0.0 0.0 0.0 5.36497710781769 0.0 38 0.0 0.0 0.0 5.490513307910586 0.0 39 0.0 0.0 0.0 5.627759064172271 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGCAAC 25 3.8918784E-5 45.000004 15 CATACGT 25 3.8918784E-5 45.000004 10 ACCGGAT 20 7.0345815E-4 45.0 6 TCACCGT 20 7.0345815E-4 45.0 16 CGACGTA 20 7.0345815E-4 45.0 11 ACGTATC 20 7.0345815E-4 45.0 34 CGTAGCA 30 2.1663382E-6 44.999996 17 TAGCCGT 135 0.0 43.333336 44 CGTTTTT 8095 0.0 42.970966 1 TGCAACG 110 0.0 42.954548 1 CCGTAGG 85 0.0 42.35294 2 TACGTAG 70 0.0 41.785713 1 GCGCGAC 1120 0.0 40.580357 9 TCGTTAG 100 0.0 40.500004 1 TCGGTAC 50 1.0822987E-9 40.500004 36 CGGTCTA 390 0.0 40.384617 31 GCTACGA 235 0.0 40.212765 10 TCGATAG 85 0.0 39.705883 1 ATAGGGC 915 0.0 39.590164 4 AATGCGT 40 3.4599907E-7 39.375 30 >>END_MODULE