SRR1546347_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546347_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1794290
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8099	0.45137631040690185	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4633	0.25820798198730416	No Hit
GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	2209	0.12311276326569284	No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	2064	0.11503157237681756	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCGA	20	7.0343463E-4	45.0	10
CCGAACA	20	7.0343463E-4	45.0	29
ACGTAAG	20	7.0343463E-4	45.0	1
CGGTCGA	25	3.891685E-5	45.0	21
GACGATA	20	7.0343463E-4	45.0	33
ATCGCTA	20	7.0343463E-4	45.0	11
TAATCCG	20	7.0343463E-4	45.0	36
CGGTCTA	210	0.0	43.92857	31
CGTTTTT	6930	0.0	43.603897	1
TATAGCG	115	0.0	43.04348	1
CTATACG	95	0.0	42.63158	1
CAATTCG	115	0.0	41.08696	14
ACGGGAC	395	0.0	41.01266	5
CGTATGA	55	6.184564E-11	40.909092	15
GACGTAG	110	0.0	40.909092	1
ACGGTCT	220	0.0	40.909092	30
CATACGA	420	0.0	40.714287	18
ATACCCG	50	1.0822987E-9	40.5	22
AACGGGA	375	0.0	40.2	4
CGCATCG	45	1.929402E-8	40.0	21