SRR1546346_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546346_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2172190
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12128	0.5583305327802817	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	9778	0.45014478475639796	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACGAG	90	0.0	45.000004	1
TAATACG	75	0.0	45.0	1
CGTATAT	25	3.891957E-5	45.0	14
GCGCCTA	20	7.034675E-4	45.0	27
TACGGTG	20	7.034675E-4	45.0	29
CGCGAAA	25	3.891957E-5	45.0	37
CGTAGTC	25	3.891957E-5	45.0	13
TGCGAAC	35	1.2125929E-7	45.0	10
TATTCGA	35	1.2125929E-7	45.0	39
TCGCTAA	50	2.1827873E-11	45.0	15
TCGTCAG	25	3.891957E-5	45.0	30
ATGCGTA	25	3.891957E-5	45.0	34
CGTTTCA	40	6.8193913E-9	45.0	30
ACGACGT	40	6.8193913E-9	45.0	21
AGTCGTT	20	7.034675E-4	45.0	18
TAACTAC	25	3.891957E-5	45.0	10
CGAAGTA	35	1.2125929E-7	45.0	43
TACAACG	20	7.034675E-4	45.0	14
CGGACGT	20	7.034675E-4	45.0	33
CCGCTTA	30	2.1663982E-6	44.999996	41