SRR1546345_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546345_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2231303
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10831	0.4854114389663797	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3698	0.1657327579445732	No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	3673	0.16461233637923672	No Hit
GTGCAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	2922	0.13095487255652863	No Hit
GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	2641	0.1183613341621465	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCCGT	20	7.0347154E-4	45.000004	14
CGTCGAC	35	1.2126111E-7	45.0	18
CTTAACG	30	2.1664255E-6	44.999996	1
CGTTTTT	8465	0.0	43.033077	1
TAATACG	85	0.0	42.352943	1
ACGGTCT	300	0.0	41.25	30
ATTTACG	105	0.0	40.714287	1
TCGATAG	100	0.0	40.5	1
TAGTACG	150	0.0	40.5	1
AGGGTAC	900	0.0	40.0	6
TATAGCG	120	0.0	39.374996	1
CGGTCTA	315	0.0	39.285713	31
AGGGCGA	2120	0.0	39.162735	6
ATACTAT	760	0.0	38.782894	45
GTGCAAG	1150	0.0	38.739132	1
TACGGGA	570	0.0	38.68421	4
TCACGAC	320	0.0	38.67188	25
ATATCGC	35	6.2509353E-6	38.571426	14
TTACGTA	35	6.2509353E-6	38.571426	30
GCGTATC	35	6.2509353E-6	38.571426	33