##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546345_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2231303 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.12911245133449 31.0 31.0 33.0 30.0 34.0 2 31.451150740172896 31.0 31.0 34.0 30.0 34.0 3 31.532214584930866 31.0 31.0 34.0 30.0 34.0 4 35.39083441379319 37.0 35.0 37.0 33.0 37.0 5 35.30087800715546 37.0 35.0 37.0 33.0 37.0 6 35.34423652905948 37.0 35.0 37.0 33.0 37.0 7 35.77960635556892 37.0 35.0 37.0 35.0 37.0 8 35.67655849519317 37.0 35.0 37.0 35.0 37.0 9 37.43187680023735 39.0 37.0 39.0 35.0 39.0 10 36.9042926935517 39.0 37.0 39.0 32.0 39.0 11 36.59317806680671 39.0 35.0 39.0 32.0 39.0 12 35.92564568774389 37.0 35.0 39.0 31.0 39.0 13 35.633958722773194 37.0 35.0 39.0 30.0 39.0 14 36.44455369799619 38.0 35.0 41.0 30.0 41.0 15 36.73030377317648 38.0 35.0 41.0 31.0 41.0 16 36.81988685534865 38.0 35.0 41.0 31.0 41.0 17 36.7552654211463 38.0 35.0 41.0 31.0 41.0 18 36.7011997025953 38.0 35.0 40.0 31.0 41.0 19 36.600718055772795 38.0 35.0 40.0 31.0 41.0 20 36.4353810307251 38.0 35.0 40.0 31.0 41.0 21 36.2911572296546 38.0 35.0 40.0 30.0 41.0 22 36.22214105390438 38.0 35.0 40.0 30.0 41.0 23 36.141238101683186 38.0 35.0 40.0 30.0 41.0 24 36.142780249925714 38.0 35.0 40.0 30.0 41.0 25 36.08276150751377 38.0 35.0 40.0 30.0 41.0 26 35.9669291889089 38.0 34.0 40.0 30.0 41.0 27 35.850522766293956 37.0 34.0 40.0 30.0 41.0 28 35.78347091363208 37.0 34.0 40.0 30.0 41.0 29 35.664838885619744 37.0 34.0 40.0 29.0 41.0 30 35.485086964881056 37.0 34.0 40.0 29.0 41.0 31 35.25423440922187 37.0 34.0 40.0 27.0 41.0 32 35.09064793082786 37.0 34.0 40.0 27.0 41.0 33 34.8948986309793 37.0 34.0 40.0 26.0 41.0 34 34.664828577741346 37.0 33.0 40.0 24.0 41.0 35 34.4649570228696 36.0 33.0 40.0 24.0 41.0 36 34.25023629690813 36.0 33.0 40.0 23.0 41.0 37 34.06890413359369 36.0 33.0 40.0 23.0 41.0 38 33.92678045070526 36.0 33.0 40.0 23.0 41.0 39 33.868447270496205 36.0 33.0 40.0 23.0 41.0 40 33.61448400329314 36.0 32.0 40.0 21.0 41.0 41 33.49327142033153 35.0 32.0 40.0 21.0 41.0 42 33.39170296459064 35.0 32.0 40.0 21.0 41.0 43 33.3393873445247 35.0 32.0 40.0 21.0 41.0 44 33.12174007743457 35.0 32.0 39.0 20.0 41.0 45 33.091413851009925 35.0 32.0 39.0 20.0 41.0 46 33.03354138814854 35.0 32.0 39.0 20.0 41.0 47 32.94267206201937 35.0 31.0 39.0 20.0 41.0 48 32.86287967165374 35.0 31.0 39.0 20.0 41.0 49 32.86228315921235 35.0 31.0 39.0 20.0 41.0 50 32.71177603400345 35.0 31.0 39.0 20.0 40.0 51 32.49666853851763 35.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 6.0 11 7.0 12 7.0 13 18.0 14 44.0 15 112.0 16 320.0 17 848.0 18 1735.0 19 3306.0 20 5677.0 21 8922.0 22 13086.0 23 18430.0 24 25441.0 25 34589.0 26 44129.0 27 50779.0 28 54980.0 29 61054.0 30 70103.0 31 83692.0 32 101502.0 33 130850.0 34 208911.0 35 264926.0 36 173655.0 37 219107.0 38 290392.0 39 364613.0 40 59.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.997486670344635 22.8857757104257 27.758757999249767 13.357979619979895 2 32.97364813295191 25.015831556718204 29.53184753482606 12.47867277550382 3 30.106758248431518 25.257932248556113 31.52601865367456 13.10929084933781 4 26.24013860959269 27.802409623435274 30.390404171912106 15.567047595059927 5 23.362761579220752 32.26348012797903 29.452432054275015 14.921326238525204 6 20.807841875352654 41.72257196803841 27.165203470797106 10.304382685811833 7 87.23575417592322 3.895526515224512 7.217083470958449 1.6516358378938227 8 88.38001831217007 3.02195622916296 6.52246691731244 2.075558541354536 9 84.49278291652904 4.095185638167474 8.421715921145626 2.9903155241578574 10 49.34444134212162 22.911186871527534 13.889104258812004 13.855267527538842 11 40.34230223326908 23.162788738239495 20.28895224001402 16.205956788477405 12 35.75005277185573 20.864311122245613 26.984053712113504 16.401582393785155 13 25.59078708718628 29.847089346449135 27.77542987214197 16.786693694222613 14 20.538895882809282 32.80858762794654 29.77829546233748 16.8742210269067 15 18.717538586198287 22.18981465090129 41.54756211953285 17.545084643367577 16 21.539432340654766 18.373120997013853 38.3491619022607 21.738284760070687 17 22.013818831418234 18.36958046486739 29.03599376687075 30.58060693684363 18 25.367016492157273 21.620147510221607 31.992427742892833 21.02040825472829 19 28.842922722731963 24.44020377331093 25.304989954300243 21.41188354965686 20 29.825980604158197 23.85502999816699 24.65147046367078 21.667518934004033 21 25.46189379030997 25.44199510330959 28.800929322463155 20.29518178391729 22 24.700365660782065 21.79538144304023 27.188373788768267 26.31587910740944 23 22.706149725070958 27.286433084166518 25.262369117954847 24.74504807280768 24 22.673523049088356 25.105778999983418 32.14722518635972 20.073472764568507 25 23.213028441229184 23.146206499072516 30.446470067041542 23.194294992656758 26 20.633325012335842 26.981543967807152 26.687141997299335 25.69798902255767 27 21.485428021205546 26.09596276256519 29.022593524949325 23.39601569127994 28 19.6205983678595 25.907911207039113 32.84856426939775 21.622926155703638 29 21.087050929434508 25.299253395885724 31.92529208269787 21.688403591981906 30 24.281462445934057 25.051729863671586 29.97365216646955 20.693155523924812 31 29.209031673421315 23.5167523191606 25.145755641434626 22.128460365983464 32 29.13113996619912 24.688713276502565 25.877346106736738 20.30280065056158 33 28.18263588584787 23.73209734401827 26.044961172911073 22.04030559722279 34 21.988318036591174 26.343665562229784 28.325960212485708 23.342056188693334 35 22.950580893764762 24.28043165809395 29.78479390741643 22.98419354072486 36 30.437865229419756 24.305394650569646 24.53306431264602 20.723675807364575 37 24.29315964707617 28.681357933010442 25.561028690410943 21.46445372950245 38 24.494252909622762 29.00412897755258 23.168883831554925 23.332734281269733 39 23.424115864138578 26.694895314531465 24.170451077240518 25.71053774408944 40 25.749125062799628 23.49308901570069 25.64770450270537 25.110081418794312 41 22.084674291210113 22.866907811265435 26.41012896948554 28.638288928038907 42 24.289081312578347 24.536873745968162 24.896125716677656 26.277919224775836 43 23.168211578615725 24.976303083893132 26.28558290828274 25.5699024292084 44 22.883893402195937 25.733663245197985 27.150772441035574 24.231670911570504 45 21.662140910490418 28.447145008992504 25.569947246071017 24.32076683444606 46 24.629241299814502 26.224497524540592 27.316863733881053 21.82939744176385 47 23.87353936242635 26.17246514704637 26.7009904078469 23.25300508268039 48 22.864801418722603 25.798199527361366 27.358812317287253 23.978186736628775 49 23.23579540743682 23.424474399039486 29.524004583868706 23.815725609654987 50 22.860902351675232 26.453422058770144 27.5857200926992 23.099955496855426 51 22.725420975994744 28.48882469122302 24.876944099479093 23.90881023330314 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 622.0 1 1504.0 2 2386.0 3 11161.5 4 19937.0 5 14539.0 6 9141.0 7 9099.5 8 9058.0 9 9363.5 10 9669.0 11 9548.0 12 9427.0 13 9317.0 14 9207.0 15 8637.5 16 8068.0 17 7974.5 18 7881.0 19 7256.0 20 6631.0 21 6253.0 22 5875.0 23 6172.5 24 6470.0 25 7600.5 26 10234.0 27 11737.0 28 13911.0 29 16085.0 30 18946.5 31 21808.0 32 26309.5 33 30811.0 34 35487.5 35 40164.0 36 44590.5 37 49017.0 38 58621.0 39 68225.0 40 86776.5 41 105328.0 42 123885.5 43 142443.0 44 146902.5 45 151362.0 46 162493.5 47 173625.0 48 174133.0 49 174641.0 50 175304.5 51 175968.0 52 170593.5 53 165219.0 54 151582.5 55 137946.0 56 133860.0 57 129774.0 58 125863.0 59 121952.0 60 113655.5 61 105359.0 62 96701.5 63 88044.0 64 77752.0 65 67460.0 66 58397.0 67 49334.0 68 42229.5 69 35125.0 70 28730.0 71 22335.0 72 18202.0 73 14069.0 74 12011.5 75 7733.0 76 5512.0 77 3914.5 78 2317.0 79 1820.5 80 1324.0 81 994.0 82 664.0 83 471.0 84 278.0 85 230.5 86 183.0 87 129.0 88 75.0 89 58.0 90 41.0 91 26.5 92 12.0 93 7.0 94 2.0 95 2.5 96 3.0 97 3.5 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2231303.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.38451946169963 #Duplication Level Percentage of deduplicated Percentage of total 1 80.70043646664627 16.450396177220053 2 6.8157896027493825 2.7787319160818957 3 2.3756828076530203 1.4528145728228463 4 1.1866034992008243 0.9675336849112035 5 0.8691750467653343 0.8858857828205822 6 0.6406371463051156 0.7835448226046606 7 0.5086786727423712 0.7258419212987883 8 0.42242320730562916 0.6888715272316139 9 0.344291714323863 0.6316399036023044 >10 3.6964416323712217 17.368754384569943 >50 1.266135509928857 18.762329818794367 >100 1.1608628017881322 35.41492669459908 >500 0.009077889327961917 1.2465492883187625 >1k 0.003542590957253431 1.3533357619840725 >5k 0.0 0.0 >10k+ 2.2141193482833944E-4 0.48884374313988627 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10831 0.4854114389663797 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3698 0.1657327579445732 No Hit GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 3673 0.16461233637923672 No Hit GTGCAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 2922 0.13095487255652863 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2641 0.1183613341621465 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.045040946926526784 0.0 2 0.0 0.0 0.0 0.1657327579445732 0.0 3 0.0 0.0 0.0 0.230672391871476 0.0 4 0.0 0.0 0.0 0.34768922015521875 0.0 5 0.0 0.0 0.0 0.6021145492118283 0.0 6 0.0 0.0 0.0 0.8503999680903939 0.0 7 0.0 0.0 0.0 1.022362269938238 0.0 8 0.0 0.0 0.0 1.5500808272117235 0.0 9 0.0 0.0 0.0 1.79513943198212 0.0 10 0.0 0.0 0.0 2.2359580926481075 0.0 11 0.0 0.0 0.0 2.5269091647346866 0.0 12 0.0 0.0 0.0 2.841478723418559 0.0 13 0.0 0.0 0.0 2.952624542699938 0.0 14 0.0 0.0 0.0 3.002326443338265 0.0 15 0.0 0.0 0.0 3.072420016465715 0.0 16 0.0 0.0 0.0 3.210097418414263 0.0 17 0.0 0.0 0.0 3.370676237158288 0.0 18 0.0 0.0 0.0 3.626311621505461 0.0 19 0.0 0.0 0.0 3.7332446557011756 0.0 20 0.0 0.0 0.0 3.856266943575122 0.0 21 0.0 0.0 0.0 3.987266632994264 0.0 22 0.0 0.0 0.0 4.124047697690543 0.0 23 0.0 0.0 0.0 4.2809067168376504 0.0 24 0.0 0.0 0.0 4.400164388252066 0.0 25 0.0 0.0 0.0 4.493473096213289 0.0 26 0.0 0.0 0.0 4.594579938269254 0.0 27 0.0 0.0 0.0 4.708818121070962 0.0 28 0.0 0.0 0.0 4.816871576832012 0.0 29 0.0 0.0 0.0 4.935994797658588 0.0 30 0.0 0.0 0.0 5.098097389731471 0.0 31 0.0 0.0 0.0 5.226676968569486 0.0 32 0.0 0.0 0.0 5.3548083787813665 0.0 33 0.0 0.0 0.0 5.486301053689257 0.0 34 0.0 0.0 0.0 5.629670197189713 0.0 35 0.0 0.0 0.0 5.8016773159001715 0.0 36 0.0 0.0 0.0 5.940295871963602 0.0 37 0.0 0.0 0.0 6.086891829572227 0.0 38 0.0 0.0 0.0 6.2761982572514805 0.0 39 0.0 0.0 0.0 6.641814222452083 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCCGT 20 7.0347154E-4 45.000004 14 CGTCGAC 35 1.2126111E-7 45.0 18 CTTAACG 30 2.1664255E-6 44.999996 1 CGTTTTT 8465 0.0 43.033077 1 TAATACG 85 0.0 42.352943 1 ACGGTCT 300 0.0 41.25 30 ATTTACG 105 0.0 40.714287 1 TCGATAG 100 0.0 40.5 1 TAGTACG 150 0.0 40.5 1 AGGGTAC 900 0.0 40.0 6 TATAGCG 120 0.0 39.374996 1 CGGTCTA 315 0.0 39.285713 31 AGGGCGA 2120 0.0 39.162735 6 ATACTAT 760 0.0 38.782894 45 GTGCAAG 1150 0.0 38.739132 1 TACGGGA 570 0.0 38.68421 4 TCACGAC 320 0.0 38.67188 25 ATATCGC 35 6.2509353E-6 38.571426 14 TTACGTA 35 6.2509353E-6 38.571426 30 GCGTATC 35 6.2509353E-6 38.571426 33 >>END_MODULE