##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546344_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2444859 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.220159117560563 31.0 31.0 33.0 30.0 34.0 2 31.556094645948907 31.0 31.0 34.0 30.0 34.0 3 31.631680599985522 31.0 31.0 34.0 30.0 34.0 4 35.48239959850445 37.0 35.0 37.0 33.0 37.0 5 35.413892580308314 37.0 35.0 37.0 33.0 37.0 6 35.452886240065375 37.0 35.0 37.0 33.0 37.0 7 35.84541276204477 37.0 35.0 37.0 35.0 37.0 8 35.7515590878656 37.0 35.0 37.0 35.0 37.0 9 37.516963963975016 39.0 37.0 39.0 35.0 39.0 10 37.026194557641155 39.0 37.0 39.0 33.0 39.0 11 36.74221008246283 39.0 35.0 39.0 32.0 39.0 12 35.97545011798226 37.0 35.0 39.0 32.0 39.0 13 35.637837192247076 37.0 35.0 39.0 31.0 39.0 14 36.49054239937763 38.0 35.0 41.0 31.0 41.0 15 36.793435531456005 38.0 35.0 41.0 31.0 41.0 16 36.91642462816874 38.0 35.0 41.0 32.0 41.0 17 36.87062444091868 38.0 35.0 41.0 32.0 41.0 18 36.76614847727415 38.0 35.0 40.0 32.0 41.0 19 36.64643605214043 38.0 35.0 40.0 31.0 41.0 20 36.480455519111736 38.0 35.0 40.0 31.0 41.0 21 36.32904228832828 38.0 35.0 40.0 31.0 41.0 22 36.232815880179594 38.0 35.0 40.0 31.0 41.0 23 36.198538647832045 37.0 35.0 40.0 31.0 41.0 24 36.19332566826962 37.0 35.0 40.0 31.0 41.0 25 36.12482069518119 37.0 35.0 40.0 31.0 41.0 26 36.02999232266564 37.0 35.0 40.0 31.0 41.0 27 35.91628474280112 37.0 34.0 40.0 30.0 41.0 28 35.87126415061155 37.0 35.0 40.0 30.0 41.0 29 35.77870298450749 37.0 34.0 40.0 30.0 41.0 30 35.624362386542536 37.0 34.0 40.0 30.0 41.0 31 35.38733562958028 36.0 34.0 40.0 29.0 41.0 32 35.19514745022106 36.0 34.0 40.0 28.0 41.0 33 34.99823589008609 36.0 34.0 40.0 27.0 41.0 34 34.76102180125725 36.0 34.0 40.0 25.0 41.0 35 34.56553936239268 36.0 33.0 40.0 25.0 41.0 36 34.3525827051785 36.0 33.0 40.0 23.0 41.0 37 34.16495347993484 36.0 33.0 40.0 23.0 41.0 38 34.0706093889259 35.0 33.0 40.0 23.0 41.0 39 34.022382476862674 36.0 33.0 40.0 23.0 41.0 40 33.75895665148788 35.0 33.0 40.0 22.0 41.0 41 33.67202321279059 35.0 33.0 40.0 22.0 41.0 42 33.56715867868045 35.0 33.0 40.0 22.0 41.0 43 33.518546059302395 35.0 33.0 40.0 22.0 41.0 44 33.347435578084465 35.0 32.0 39.0 22.0 41.0 45 33.305297769728234 35.0 32.0 39.0 22.0 41.0 46 33.225419543621946 35.0 32.0 39.0 22.0 41.0 47 33.13543030497873 35.0 32.0 39.0 21.0 41.0 48 33.061623594653106 35.0 32.0 39.0 21.0 41.0 49 33.04253333218807 35.0 32.0 39.0 20.0 41.0 50 32.89776711049594 35.0 32.0 39.0 20.0 41.0 51 32.67716297749686 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 4.0 12 13.0 13 17.0 14 34.0 15 92.0 16 283.0 17 707.0 18 1591.0 19 3042.0 20 5276.0 21 8253.0 22 12452.0 23 17987.0 24 25697.0 25 35658.0 26 46264.0 27 53109.0 28 56744.0 29 62844.0 30 72738.0 31 88056.0 32 108967.0 33 141978.0 34 242741.0 35 324894.0 36 183890.0 37 227550.0 38 312424.0 39 411493.0 40 60.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.366194533099865 22.328649627647238 28.488759474472765 14.816396364780138 2 32.679594201547005 25.071711701983634 29.69005574554606 12.558638350923305 3 30.392468440920318 24.810387838317055 31.95983899275991 12.837304728002719 4 25.943377511750164 27.277033154059193 31.43817291712937 15.341416417061271 5 23.582341558347537 31.50733846000935 30.217325416312352 14.69299456533076 6 20.51717501909108 41.27959935521844 27.505185370608288 10.698040255082194 7 86.6344030473741 4.193002541250845 7.457526180446399 1.715068230928655 8 87.764243254928 3.2885741059095843 7.022204552491575 1.924978086670847 9 83.7122713416193 4.488111584349036 8.902599291002057 2.8970177830296144 10 49.65002071694114 23.185181640331816 14.7284158309334 12.436381811793645 11 42.487317264513 21.98740295452621 21.25521349083935 14.270066290121433 12 38.63895627518806 21.134879352960642 25.74725168199884 14.47891268985246 13 24.40361591404658 34.266638689593144 25.850447817236088 15.479297579124196 14 18.65281392505662 37.25241414740073 28.639565717286764 15.455206210255886 15 16.613923338728327 23.032862017809617 44.214410728798676 16.138803914663384 16 18.985184830699847 18.145954429273836 41.88208808769749 20.986772652328824 17 19.61340101821823 18.813518489205308 29.28115690925325 32.29192358332321 18 23.978601628969194 22.345092293666017 32.805859151795666 20.870446925569123 19 29.022982511465894 23.9878046136812 25.603889631262987 21.385323243589916 20 30.23978069900964 23.46622034235921 24.06089676337163 22.233102195259523 21 24.49180095866469 26.552328784604757 28.3029000854446 20.65297017128595 22 24.04400417365582 22.791252992503864 27.092155416733643 26.072587417106675 23 20.916339142666303 27.934862501273077 25.803982969979046 25.34481538608157 24 22.24001465933209 24.452453086251598 34.3582595151704 18.949272739245902 25 20.86541596059323 23.97582028247846 32.25637961125775 22.902384145670567 26 19.1432716569749 30.10181773263816 27.13739319936242 23.617517411024522 27 19.712261525102264 28.808000788593535 29.407176446576266 22.072561239727936 28 17.58211823258519 26.419151370283522 35.667496571376915 20.331233825754367 29 18.555957623732084 25.0911811274188 34.44439945207474 21.908461796774375 30 22.038367038753563 26.497724408646878 31.546645430268168 19.91726312233139 31 28.369161575371017 24.664326245399018 25.62564957733759 21.34086260189238 32 28.622632225416684 25.45950502667025 26.074959742054656 19.842903005858414 33 28.03744510419619 25.505806265310188 25.199980857791797 21.25676777270182 34 21.351251749078372 26.12089286130611 29.263323569989108 23.26453181962641 35 21.993538277667547 25.20926564681235 30.59800176615502 22.19919430936508 36 29.534913874378848 24.69438932879156 25.957815972209442 19.81288082462015 37 22.66044790313061 29.879678132767573 27.473199885964796 19.98667407813702 38 23.31725469648761 29.822456018936062 24.001465933209236 22.858823351367093 39 22.720614972069963 27.464774042184025 26.133122605434504 23.681488380311503 40 24.559534926145023 24.552704266381006 26.30343917583795 24.584321631636016 41 20.421995706091845 23.04533717486366 27.52633178436875 29.006335334675743 42 23.626965808662177 25.42019805641143 24.59213394310265 26.360702191823744 43 23.127591407111822 26.171693336916363 25.885909984993 24.81480527097882 44 21.783628421925354 27.87612700773337 27.31494945107264 23.025295119268637 45 20.554845903178876 31.561411107961646 24.267698055388877 23.6160449334706 46 23.714578223120434 28.749837925213683 27.09698187093816 20.43860198072772 47 23.518370589060556 26.680761549030024 27.545392188261165 22.255475673648256 48 23.206328054092282 25.09494412561215 28.695560766490008 23.003167053805555 49 22.43646770631762 23.912749160585538 30.375125927507472 23.27565720558936 50 21.631554212328812 27.762378116693025 27.5953746207859 23.01069305019226 51 21.01143665135699 30.057479797403445 25.385063105888722 23.546020445350834 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1199.0 1 2189.5 2 3180.0 3 13134.5 4 23089.0 5 16917.0 6 10745.0 7 10948.5 8 11152.0 9 11725.5 10 12299.0 11 12214.5 12 12130.0 13 11953.5 14 11777.0 15 11069.5 16 10362.0 17 9947.0 18 9532.0 19 9188.0 20 8844.0 21 8800.5 22 8757.0 23 9000.5 24 9244.0 25 9373.5 26 12542.0 27 15581.0 28 17176.5 29 18772.0 30 22108.0 31 25444.0 32 33726.5 33 42009.0 34 47009.5 35 52010.0 36 58065.5 37 64121.0 38 73212.0 39 82303.0 40 106033.5 41 129764.0 42 156401.0 43 183038.0 44 190696.5 45 198355.0 46 203143.5 47 207932.0 48 205518.0 49 203104.0 50 194043.5 51 184983.0 52 173958.0 53 162933.0 54 149318.5 55 135704.0 56 132876.5 57 130049.0 58 120473.0 59 110897.0 60 102662.5 61 94428.0 62 84522.5 63 74617.0 64 66629.0 65 58641.0 66 52631.0 67 46621.0 68 38070.5 69 29520.0 70 24991.5 71 20463.0 72 17265.5 73 14068.0 74 11425.5 75 6341.0 76 3899.0 77 3176.0 78 2453.0 79 1943.5 80 1434.0 81 981.0 82 528.0 83 434.5 84 341.0 85 241.0 86 141.0 87 96.0 88 51.0 89 35.0 90 19.0 91 15.5 92 12.0 93 16.5 94 21.0 95 13.5 96 6.0 97 3.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2444859.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.343860954226248 #Duplication Level Percentage of deduplicated Percentage of total 1 81.15043645755604 14.886123227521805 2 7.185092235049669 2.6360466580608364 3 2.448763453206603 1.3475932888623854 4 1.2571592995521863 0.9224462155319108 5 0.7952636661603576 0.7294103056996901 6 0.5605207880217383 0.6169269238454457 7 0.41259742587510656 0.5298040867227238 8 0.34762178439434904 0.5101380542071964 9 0.3031605931477755 0.5005022190753194 >10 3.102688517379232 12.844139098093018 >50 0.9380125959146866 12.483406259478542 >100 1.4847607448901654 48.8445303424609 >500 0.008982218614302359 1.0702542420260186 >1k 0.0044911093071511796 1.245773960495454 >5k 2.24555465357559E-4 0.305522119663882 >10k+ 2.24555465357559E-4 0.5273829982549119 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12803 0.52367028119004 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7417 0.3033712782618548 No Hit GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2961 0.12111127880994364 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07509635524993466 0.0 2 0.0 0.0 0.0 0.2614874722836777 0.0 3 0.0 0.0 0.0 0.3624748911900441 0.0 4 0.0 0.0 0.0 0.5065322785485789 0.0 5 0.0 0.0 0.0 0.7784088980182498 0.0 6 0.0 0.0 0.0 1.0539667113727214 0.0 7 0.0 0.0 0.0 1.2141804496701036 0.0 8 0.0 0.0 0.0 1.626596871230611 0.0 9 0.0 0.0 0.0 1.8248496130042673 0.0 10 0.0 0.0 0.0 2.1871199934229337 0.0 11 0.0 0.0 0.0 2.477811603859364 0.0 12 0.0 0.0 0.0 2.766867128124771 0.0 13 0.0 0.0 0.0 2.8782845963714063 0.0 14 0.0 0.0 0.0 2.9249539543998244 0.0 15 0.0 0.0 0.0 2.99939587518135 0.0 16 0.0 0.0 0.0 3.1646405784546268 0.0 17 0.0 0.0 0.0 3.3466142628266087 0.0 18 0.0 0.0 0.0 3.6521124531107927 0.0 19 0.0 0.0 0.0 3.7632845084317745 0.0 20 0.0 0.0 0.0 3.8992841713980235 0.0 21 0.0 0.0 0.0 4.0409283316543 0.0 22 0.0 0.0 0.0 4.180854601431003 0.0 23 0.0 0.0 0.0 4.33088370331377 0.0 24 0.0 0.0 0.0 4.442751095257436 0.0 25 4.090215427556354E-5 0.0 0.0 4.529872683864387 0.0 26 4.090215427556354E-5 0.0 0.0 4.620061934042004 0.0 27 4.090215427556354E-5 0.0 0.0 4.725875807152887 0.0 28 4.090215427556354E-5 0.0 0.0 4.828867431618756 0.0 29 4.090215427556354E-5 0.0 0.0 4.942493616196272 0.0 30 4.090215427556354E-5 0.0 0.0 5.089782273742576 0.0 31 4.090215427556354E-5 0.0 0.0 5.2152700830600045 0.0 32 4.090215427556354E-5 0.0 0.0 5.325133269444168 0.0 33 4.090215427556354E-5 0.0 0.0 5.44211343067228 0.0 34 4.090215427556354E-5 0.0 0.0 5.567887555069638 0.0 35 4.090215427556354E-5 0.0 0.0 5.719389134506326 0.0 36 4.090215427556354E-5 0.0 0.0 5.8355512526489255 0.0 37 4.090215427556354E-5 0.0 0.0 5.963615897685715 0.0 38 4.090215427556354E-5 0.0 0.0 6.101537961902915 0.0 39 4.090215427556354E-5 0.0 0.0 6.298604541202581 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATCCGT 20 7.0348475E-4 45.000004 11 CAATCGA 20 7.0348475E-4 45.000004 26 ACGGTCC 55 1.8189894E-12 45.000004 10 TATCTCG 35 1.2126839E-7 45.0 1 GACGATT 25 3.8921004E-5 45.0 30 CGTTTCA 25 3.8921004E-5 45.0 26 AGTACGT 25 3.8921004E-5 45.0 5 ATCGCAA 25 3.8921004E-5 45.0 16 CGTTTTT 10270 0.0 42.85297 1 GTACGGG 855 0.0 42.368423 3 CGTTGAT 330 0.0 42.272728 25 TCACGAC 395 0.0 42.1519 25 CGTATGA 70 0.0 41.785713 15 TCGTTGA 335 0.0 41.641792 24 ACAATCG 60 3.6379788E-12 41.249996 15 TAGCCGT 190 0.0 40.263157 44 GTAGGGC 895 0.0 40.223465 4 CTAAGCG 140 0.0 40.17857 1 TATAGCG 90 0.0 40.0 1 ATAACGG 90 0.0 40.0 2 >>END_MODULE