##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546343_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2181179 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.148859401268762 31.0 31.0 33.0 30.0 34.0 2 31.48857704938476 31.0 31.0 34.0 30.0 34.0 3 31.539792928503346 31.0 31.0 34.0 30.0 34.0 4 35.39126637474504 37.0 35.0 37.0 33.0 37.0 5 35.30517577878753 37.0 35.0 37.0 33.0 37.0 6 35.35258408411231 37.0 35.0 37.0 33.0 37.0 7 35.80023785301436 37.0 35.0 37.0 35.0 37.0 8 35.72214843440176 37.0 35.0 37.0 35.0 37.0 9 37.47276633417065 39.0 37.0 39.0 35.0 39.0 10 36.91945915488825 39.0 37.0 39.0 32.0 39.0 11 36.60554131504109 39.0 35.0 39.0 32.0 39.0 12 35.94273922497879 37.0 35.0 39.0 32.0 39.0 13 35.62588352446085 37.0 35.0 39.0 30.0 39.0 14 36.56797768546277 38.0 35.0 41.0 31.0 41.0 15 36.84059355055225 38.0 35.0 41.0 31.0 41.0 16 36.9425104496238 38.0 35.0 41.0 32.0 41.0 17 36.874448176880485 38.0 35.0 41.0 32.0 41.0 18 36.7813132255537 38.0 35.0 40.0 31.0 41.0 19 36.66651384411825 38.0 35.0 40.0 31.0 41.0 20 36.48299795660971 38.0 35.0 40.0 31.0 41.0 21 36.33917023774757 38.0 35.0 40.0 31.0 41.0 22 36.22079664254974 38.0 35.0 40.0 30.0 41.0 23 36.16734252438704 38.0 35.0 40.0 30.0 41.0 24 36.11927265025016 37.0 35.0 40.0 30.0 41.0 25 36.057910423674535 37.0 35.0 40.0 30.0 41.0 26 35.96324419041262 37.0 35.0 40.0 30.0 41.0 27 35.84134910523162 37.0 34.0 40.0 30.0 41.0 28 35.79716382745295 37.0 34.0 40.0 30.0 41.0 29 35.72867701367013 37.0 34.0 40.0 30.0 41.0 30 35.58870546617219 37.0 34.0 40.0 29.0 41.0 31 35.378609916930245 37.0 34.0 40.0 29.0 41.0 32 35.153552734553195 37.0 34.0 40.0 27.0 41.0 33 34.93224581751429 37.0 34.0 40.0 26.0 41.0 34 34.70444241394218 37.0 34.0 40.0 25.0 41.0 35 34.49721457982128 36.0 33.0 40.0 24.0 41.0 36 34.277072170601315 36.0 33.0 40.0 23.0 41.0 37 34.08615019675139 36.0 33.0 40.0 23.0 41.0 38 34.02428915737773 36.0 33.0 40.0 23.0 41.0 39 33.98460007179603 36.0 33.0 40.0 23.0 41.0 40 33.74477748043604 36.0 33.0 40.0 22.0 41.0 41 33.65752604440076 36.0 33.0 40.0 21.0 41.0 42 33.54045678965367 35.0 33.0 40.0 21.0 41.0 43 33.48892777713338 35.0 32.0 40.0 21.0 41.0 44 33.30579883631742 35.0 32.0 40.0 20.0 41.0 45 33.266606271195535 35.0 32.0 40.0 20.0 41.0 46 33.15842762102514 35.0 32.0 40.0 20.0 41.0 47 33.10266786907448 35.0 32.0 39.0 20.0 41.0 48 33.01588040229619 35.0 32.0 39.0 20.0 41.0 49 33.037924443615125 35.0 32.0 39.0 20.0 41.0 50 32.889621163600054 35.0 32.0 39.0 19.0 41.0 51 32.678151586825294 35.0 31.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 9.0 12 3.0 13 12.0 14 32.0 15 114.0 16 323.0 17 725.0 18 1638.0 19 3114.0 20 5505.0 21 8442.0 22 12650.0 23 18051.0 24 25364.0 25 35115.0 26 44476.0 27 50064.0 28 52344.0 29 57259.0 30 66046.0 31 78259.0 32 95779.0 33 121507.0 34 201750.0 35 275180.0 36 156489.0 37 195019.0 38 275817.0 39 400011.0 40 81.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.68172855139353 22.33911109542133 28.966994455750765 16.012165897434368 2 31.65292715545125 26.00391806449631 29.36191848536961 12.98123629468283 3 28.90060834071848 25.15158086521097 33.10255600296904 12.84525479110151 4 25.168498321320715 27.764800596374712 32.497241170944704 14.569459911359866 5 22.772683947534798 32.69772907221278 30.65974869554493 13.869838284707491 6 20.395620900439624 41.38537002235947 27.820687802330756 10.39832127487015 7 85.99514299376622 4.335911908192771 7.978895817353826 1.690049280687188 8 87.22736648390618 3.319168211320575 7.376606871788148 2.0768584329850968 9 83.07222836823571 4.762699439156529 9.319959526476278 2.8451126661314823 10 46.903394907066314 26.48599679347729 15.527611443169038 11.082996856287357 11 39.79806334097293 22.03207531339702 24.108658665794966 14.06120267983508 12 36.18818079579897 21.848092247357968 27.075998806150253 14.887728150692814 13 22.002641690571934 35.205592938497944 27.17117668930427 15.620588681625854 14 17.14769856119099 37.73881006556546 29.033151336960422 16.08034003628313 15 15.563601153321208 23.381299746604935 45.28092375728906 15.774175342784796 16 16.683912691255507 19.258254366102005 43.30300264214904 20.75483030049345 17 17.431214953013942 20.30681571755459 29.863390395744688 32.398578933686785 18 22.18167330604228 23.269433641163793 33.23271496745567 21.31617808533825 19 26.92222875793321 24.67853394884143 27.395092287244648 21.00414500598071 20 29.906486354398243 22.955245763873574 26.142925454536286 20.9953424271919 21 23.371442692232044 26.45986413769801 29.137361032725877 21.03133213734407 22 22.696257391071526 24.02058703114233 27.62217131193726 25.660984265848885 23 20.38668078135724 28.867506976731395 26.448998454505567 24.296813787405803 24 20.56112772037508 24.245694644960363 35.94377169411589 19.249405940548666 25 18.387899388358314 25.42212262267333 33.30854551598012 22.881432472988234 26 18.498573477921802 31.15558145388343 28.431916866978824 21.91392820121595 27 18.56615160883174 30.52816848135802 30.26257817446436 20.643101735345883 28 17.151687229704667 26.948636494299645 36.95262974748977 18.947046528505915 29 17.934795814557173 24.110354996082396 36.23613651149218 21.718712677868254 30 19.331425802283995 27.990458371367044 32.22619509907256 20.451920727276395 31 26.396733142947003 26.572005323726295 26.514192553660198 20.5170689796665 32 27.308029281411567 27.3523631027073 26.839796275317156 18.49981134056398 33 25.311907000755095 28.201720262298508 25.96073041231371 20.52564232463269 34 19.79388211604825 27.313485046390053 29.370491830335794 23.52214100722591 35 21.139438808094155 26.72971819369249 29.60866577204347 22.522177226169884 36 27.299868557326107 25.00482537196626 27.512505851193325 20.182800219514306 37 20.980946543131033 30.03994628593068 28.88502044077996 20.094086730158324 38 21.813248706318923 29.855871526362577 26.010199071236244 22.320680696082256 39 20.887052369383714 29.150794134731722 27.203544505058964 22.758608990825604 40 23.767421197434967 25.830021286652773 26.845114500002065 23.557443015910202 41 18.16801830569614 25.371737028460295 28.38827074715097 28.071973918692596 42 23.13597370963135 26.011207700055795 25.236076452230648 25.616742138082206 43 23.294053353713746 26.216051043953755 26.05865910133923 24.43123650099327 44 21.13875110662628 28.58495336696346 28.308909997758093 21.967385528652166 45 19.46085121853823 32.73463571765545 24.56034098989583 23.244172073910484 46 22.45441570820185 30.119261188559033 27.174248422527448 20.252074680711672 47 22.44465034735801 27.027905550163467 27.63766751834673 22.889776584131795 48 23.78333002472516 23.87135581261327 29.265090118692687 23.08022404396888 49 20.577999329720303 24.135616563335702 31.170389958825023 24.115994148118975 50 19.618472394975377 29.249593912283217 28.343982772619764 22.78795092012164 51 19.5950905450676 31.006946243293193 25.38214424400748 24.015818967631724 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1077.0 1 1828.0 2 2579.0 3 12204.0 4 21829.0 5 16389.0 6 10949.0 7 11380.5 8 11812.0 9 12307.0 10 12802.0 11 12791.5 12 12781.0 13 12389.5 14 11998.0 15 11695.0 16 11392.0 17 10869.5 18 10347.0 19 10099.0 20 9851.0 21 9337.5 22 8824.0 23 9959.5 24 11095.0 25 11420.5 26 14623.5 27 17501.0 28 20174.0 29 22847.0 30 28555.0 31 34263.0 32 41136.5 33 48010.0 34 52837.5 35 57665.0 36 60761.0 37 63857.0 38 74501.0 39 85145.0 40 108766.0 41 132387.0 42 156256.0 43 180125.0 44 185709.0 45 191293.0 46 188121.5 47 184950.0 48 180119.5 49 175289.0 50 169373.0 51 163457.0 52 149103.0 53 134749.0 54 123487.0 55 112225.0 56 102874.0 57 93523.0 58 90248.0 59 86973.0 60 80924.0 61 74875.0 62 65208.5 63 55542.0 64 48136.0 65 40730.0 66 34092.0 67 27454.0 68 22729.0 69 18004.0 70 15076.5 71 12149.0 72 10699.0 73 9249.0 74 6907.0 75 3713.0 76 2861.0 77 2044.0 78 1227.0 79 927.5 80 628.0 81 421.5 82 215.0 83 193.0 84 171.0 85 118.5 86 66.0 87 58.5 88 51.0 89 42.5 90 34.0 91 22.5 92 11.0 93 8.0 94 5.0 95 2.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2181179.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.554055580030035 #Duplication Level Percentage of deduplicated Percentage of total 1 82.48444226989841 16.129053686333723 2 7.003503487414788 2.738937928956859 3 2.232313330142459 1.3095233678894274 4 1.1349496674444683 0.8877147551098296 5 0.6745040738714224 0.6594645074719239 6 0.4822239688363766 0.5657660573189507 7 0.358669940719032 0.49094163689942205 8 0.2814056966918293 0.4402098106919283 9 0.24419781604058888 0.4297551900641662 >10 2.672477516073473 12.143568163903401 >50 0.9982684702853066 14.226695148275784 >100 1.4229104158060033 47.83832498463706 >500 0.008483732184396763 1.0570966785931786 >1k 0.0011782961367217727 0.2923374598515748 >5k 2.3565922734435454E-4 0.2454731476401858 >10k+ 2.3565922734435454E-4 0.5451374763625677 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11830 0.5423672243314281 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5327 0.24422571462498033 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.054007488610517525 0.0 2 0.0 0.0 0.0 0.22854612115741074 0.0 3 0.0 0.0 0.0 0.3388075898401736 0.0 4 0.0 0.0 0.0 0.5088532394636112 0.0 5 0.0 0.0 0.0 0.824691600276731 0.0 6 0.0 0.0 0.0 1.1392462516831494 0.0 7 0.0 0.0 0.0 1.3371667341378217 0.0 8 0.0 0.0 0.0 1.842764853320154 0.0 9 0.0 0.0 0.0 2.0790590776822993 0.0 10 0.0 0.0 0.0 2.504333665416731 0.0 11 0.0 0.0 0.0 2.84726746406416 0.0 12 0.0 0.0 0.0 3.1901095691825385 0.0 13 4.584676452505732E-5 0.0 0.0 3.3326930068554668 0.0 14 4.584676452505732E-5 0.0 0.0 3.389909768982738 0.0 15 4.584676452505732E-5 0.0 0.0 3.4750013639412445 0.0 16 4.584676452505732E-5 0.0 0.0 3.6637066467263804 0.0 17 4.584676452505732E-5 0.0 0.0 3.8741432958963937 0.0 18 4.584676452505732E-5 0.0 0.0 4.235874267999096 0.0 19 4.584676452505732E-5 0.0 0.0 4.367683716008636 0.0 20 4.584676452505732E-5 0.0 0.0 4.53126497183404 0.0 21 4.584676452505732E-5 0.0 0.0 4.687923366216161 0.0 22 4.584676452505732E-5 0.0 0.0 4.835733335044946 0.0 23 4.584676452505732E-5 0.0 0.0 5.001194308215878 0.0 24 4.584676452505732E-5 0.0 0.0 5.122183919797504 0.0 25 4.584676452505732E-5 0.0 0.0 5.220754463526378 0.0 26 4.584676452505732E-5 0.0 0.0 5.314923717860845 0.0 27 4.584676452505732E-5 0.0 0.0 5.42674397653746 0.0 28 4.584676452505732E-5 0.0 0.0 5.5314121399481655 0.0 29 4.584676452505732E-5 0.0 0.0 5.63516336806837 0.0 30 4.584676452505732E-5 0.0 0.0 5.777059104273423 0.0 31 4.584676452505732E-5 0.0 0.0 5.9063928269986095 0.0 32 4.584676452505732E-5 0.0 0.0 6.030133244451739 0.0 33 4.584676452505732E-5 0.0 0.0 6.144887696057958 0.0 34 4.584676452505732E-5 0.0 0.0 6.268811500569187 0.0 35 4.584676452505732E-5 0.0 0.0 6.418363646449925 0.0 36 4.584676452505732E-5 0.0 0.0 6.544442248893832 0.0 37 4.584676452505732E-5 0.0 0.0 6.679552663949176 0.0 38 4.584676452505732E-5 0.0 0.0 6.80677743550621 0.0 39 4.584676452505732E-5 0.0 0.0 6.936294545289497 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATTGCG 40 6.8193913E-9 45.000004 38 ACAACGT 25 3.8919614E-5 45.0 27 ACGCTAA 45 3.8562575E-10 45.0 30 CGTTTCA 25 3.8919614E-5 45.0 24 CGATACG 110 0.0 45.0 10 TACGTTG 50 2.1827873E-11 45.0 1 CGTTTTT 10070 0.0 43.637043 1 TACGGGA 610 0.0 43.15574 4 CGTAAGG 305 0.0 42.786884 2 CGTAAAT 85 0.0 42.35294 16 ACGTAAG 200 0.0 41.625 1 ACGTTCA 65 0.0 41.538464 22 AGTCGAC 60 3.6379788E-12 41.250004 13 ATAGGGC 805 0.0 41.086956 4 TCTAGCG 55 6.184564E-11 40.909092 1 AGGGCGA 1895 0.0 40.844326 6 TGTTACG 105 0.0 40.714287 1 TACGATG 50 1.0822987E-9 40.5 1 CGGGATT 450 0.0 40.5 6 ACGGGAC 545 0.0 40.04587 5 >>END_MODULE