SRR1546341_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546341_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2161810
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8711	0.4029493803803294	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4899	0.22661566002562666	No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	4068	0.18817564910884862	No Hit
GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	3267	0.151123364217947	No Hit
GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	2376	0.109907901249416	No Hit
GTACGAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	2257	0.10440325468010603	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAC	40	6.8193913E-9	45.000004	10
GCGTGTA	25	3.8919497E-5	45.000004	14
CGCATCG	170	0.0	43.676468	21
CGTTTTT	8035	0.0	43.375854	1
CGACGGT	535	0.0	42.476635	28
CGGGATA	220	0.0	41.93182	6
ATAACGG	175	0.0	41.142857	2
CTAACGG	110	0.0	40.909092	2
TCACGAC	580	0.0	40.732758	25
TATAGCG	150	0.0	40.5	1
TCGATAG	95	0.0	40.263157	1
TACGGGA	555	0.0	40.135136	4
TCGTTAG	90	0.0	40.000004	1
CGTAAGG	220	0.0	39.886364	2
TAGCCGT	255	0.0	39.705883	44
TTATACG	85	0.0	39.705883	1
CGGTCTA	565	0.0	39.42478	31
CGAATAA	40	3.4600998E-7	39.375004	35
ACGTAAG	40	3.4600998E-7	39.375004	1
CGTTTCA	40	3.4600998E-7	39.375004	27