SRR1546340_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546340_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1786094
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8266	0.46279759072030924	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8015	0.44874457895273145	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2033	0.11382379650791057	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAC	30	2.16618E-6	45.000004	37
CGAGTAC	30	2.16618E-6	45.000004	8
ATCGTTA	30	2.16618E-6	45.000004	36
TTGAGTA	60	0.0	45.000004	32
TGCGCAA	25	3.891676E-5	45.000004	13
CACTACG	25	3.891676E-5	45.000004	1
ACTACGC	25	3.891676E-5	45.000004	25
ACGTCGT	30	2.16618E-6	45.000004	45
CTCGAAT	25	3.891676E-5	45.000004	33
ATCGCTA	25	3.891676E-5	45.000004	2
AAATGCG	30	2.16618E-6	45.000004	1
ACGCGTC	25	3.891676E-5	45.000004	28
AATCCCG	35	1.2124292E-7	45.0	10
ATTAGCC	35	1.2124292E-7	45.0	12
TCGATAG	35	1.2124292E-7	45.0	1
ATCGTAT	90	0.0	45.0	13
GCCGAAC	20	7.034339E-4	45.0	26
CGTAGCA	20	7.034339E-4	45.0	26
TGGATCG	55	1.8189894E-12	45.0	34
ATAGTAC	35	1.2124292E-7	45.0	33