SRR1546339_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546339_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	650332
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5560	0.8549479342858725	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAACGCGATCGTATGCCG	2621	0.4030249165041856	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2161	0.33229181402729685	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAACGCGATCGTATGC	1723	0.26494159906017234	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAACGCGATCGTATGCCGTCTTC	1034	0.15899571295891946	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	738	0.11348049919118235	No Hit
GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	682	0.10486951280269155	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	55	1.8189894E-12	45.0	25
CTCACGT	55	1.8189894E-12	45.0	45
GATAATC	20	7.031025E-4	45.0	9
GGTCGAG	20	7.031025E-4	45.0	1
CGACGGT	55	1.8189894E-12	45.0	28
CTATCGC	25	3.888931E-5	45.0	44
TAGACCC	20	7.031025E-4	45.0	39
AACCACG	25	3.888931E-5	45.0	33
TAAACGG	40	6.8066583E-9	45.0	2
CACGACC	25	3.888931E-5	45.0	27
ACGGGTA	100	0.0	45.0	5
TCGGCGA	20	7.031025E-4	45.0	23
ACTAGGT	20	7.031025E-4	45.0	3
CTTGCGA	20	7.031025E-4	45.0	13
TCTCGAG	25	3.888931E-5	45.0	1
CGAATTA	20	7.031025E-4	45.0	44
ATGGTCG	40	6.8066583E-9	45.0	44
GTATATC	20	7.031025E-4	45.0	24
CTCGAGG	40	6.8066583E-9	45.0	2
GGTCTAA	55	1.8189894E-12	45.0	32