##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546338_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2081272 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.081528027091124 31.0 31.0 33.0 30.0 34.0 2 31.404719805964813 31.0 31.0 34.0 30.0 34.0 3 31.46872297325866 31.0 31.0 34.0 30.0 34.0 4 35.35454375977768 37.0 35.0 37.0 33.0 37.0 5 35.266906968430845 37.0 35.0 37.0 33.0 37.0 6 35.32009031015648 37.0 35.0 37.0 33.0 37.0 7 35.70856668422004 37.0 35.0 37.0 35.0 37.0 8 35.58872747050842 37.0 35.0 37.0 35.0 37.0 9 37.34609796316868 39.0 37.0 39.0 35.0 39.0 10 36.82290733743595 39.0 37.0 39.0 32.0 39.0 11 36.57725227649245 39.0 35.0 39.0 32.0 39.0 12 36.14333349989814 38.0 35.0 39.0 32.0 39.0 13 35.94336876679262 38.0 35.0 39.0 31.0 39.0 14 36.88549502419674 39.0 35.0 41.0 31.0 41.0 15 37.074427081131155 39.0 35.0 41.0 31.0 41.0 16 37.11224866331743 39.0 35.0 41.0 32.0 41.0 17 36.98832781106938 39.0 35.0 41.0 31.0 41.0 18 36.915000057657046 38.0 35.0 40.0 31.0 41.0 19 36.8121663098336 38.0 35.0 40.0 31.0 41.0 20 36.61944570435772 38.0 35.0 40.0 31.0 41.0 21 36.50330519028748 38.0 35.0 40.0 31.0 41.0 22 36.423613540181194 38.0 35.0 40.0 30.0 41.0 23 36.32346180604938 38.0 35.0 40.0 30.0 41.0 24 36.34322616169342 38.0 35.0 40.0 30.0 41.0 25 36.29268111039787 38.0 35.0 40.0 30.0 41.0 26 36.16165018315722 38.0 35.0 40.0 30.0 41.0 27 36.04249949069607 38.0 35.0 40.0 30.0 41.0 28 35.96586654699626 38.0 35.0 40.0 30.0 41.0 29 35.81347752720452 38.0 34.0 40.0 29.0 41.0 30 35.63279859624307 38.0 34.0 40.0 29.0 41.0 31 35.4353736561103 38.0 34.0 40.0 27.0 41.0 32 35.24615187250873 38.0 34.0 40.0 26.0 41.0 33 35.03527266018089 38.0 34.0 40.0 25.0 41.0 34 34.74303743095569 37.0 33.0 40.0 24.0 41.0 35 34.55223728565992 37.0 33.0 40.0 23.0 41.0 36 34.367909144023464 37.0 33.0 40.0 23.0 41.0 37 34.182024262085875 37.0 33.0 40.0 23.0 41.0 38 34.05071465911231 37.0 33.0 40.0 22.0 41.0 39 33.962273551943234 37.0 33.0 40.0 22.0 41.0 40 33.74804638701717 36.0 33.0 40.0 21.0 41.0 41 33.59839607701444 36.0 32.0 40.0 20.0 41.0 42 33.48085545762399 36.0 32.0 40.0 20.0 41.0 43 33.43964412147956 36.0 32.0 40.0 20.0 41.0 44 33.22705537767288 35.0 32.0 40.0 19.0 41.0 45 33.2070373310168 35.0 32.0 40.0 20.0 41.0 46 33.14101760846252 35.0 32.0 40.0 20.0 41.0 47 33.02519805196053 35.0 31.0 39.0 20.0 41.0 48 32.92841877467241 35.0 31.0 39.0 20.0 41.0 49 32.90576724234026 35.0 31.0 39.0 20.0 41.0 50 32.76619922816432 35.0 31.0 39.0 19.0 41.0 51 32.5707336667192 35.0 31.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 8.0 13 19.0 14 36.0 15 108.0 16 296.0 17 745.0 18 1740.0 19 3203.0 20 5386.0 21 8460.0 22 12914.0 23 18104.0 24 24772.0 25 33109.0 26 41679.0 27 47258.0 28 51362.0 29 55626.0 30 64222.0 31 74709.0 32 91201.0 33 115028.0 34 172569.0 35 208773.0 36 171607.0 37 218078.0 38 293469.0 39 366740.0 40 47.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.06779892296634 22.041328572142422 27.09496884597496 14.795903658916279 2 34.17837745378788 24.75563021075573 28.408828831599138 12.657163503857257 3 30.059357931111357 25.434686095810637 31.258384295757597 13.247571677320408 4 26.669459830334524 26.842815355225074 31.33521231247045 15.15251250196995 5 23.16785119869003 31.466622334802945 30.45796032426324 14.90756614224378 6 20.256218312647263 41.68052037407893 27.490400101476403 10.5728612117974 7 86.0008206519859 3.5147736576478232 8.671716142820351 1.812689547545924 8 86.50925972193929 3.4847919925891473 7.831845140856168 2.174103144615408 9 82.16946175223613 4.416193558554577 9.529508877263519 3.8848358119457713 10 42.85129478511218 26.89086289538321 16.148153629126803 14.109688690377808 11 34.22065928912703 23.853537644286764 24.762501008998345 17.16330205758786 12 30.794052867669386 21.19674891124274 29.5900295588467 18.419168662241166 13 24.835485222498548 25.900458950103587 30.936706014398887 18.327349812998975 14 20.29114887434223 29.75079662821582 31.505396699710563 18.452657797731387 15 19.083858332788793 22.50662095103379 38.560265068669544 19.84925564750787 16 22.489996502139075 19.936077552573618 35.38437071175704 22.189555233530264 17 22.264989871578535 20.413525959124996 30.299403441741397 27.02208072755507 18 24.669769256493147 21.867732809551082 31.920335256516207 21.542162677439567 19 27.355290418551732 24.65290456989764 26.46006865032538 21.53173636122525 20 28.39047467125873 23.73697431186313 26.229824837887598 21.64272617899054 21 25.91343178594629 25.14625671224136 28.881712721835495 20.05859877997686 22 24.77028471050396 21.881570501116627 28.4360717868688 24.912073001510613 23 22.80326646397011 26.023989175850154 27.32314661418594 23.849597745993798 24 23.1413770040629 25.212658412739902 30.940309579910746 20.705655003286452 25 24.04284495250981 24.1065559907595 28.849953297790965 23.000645758939726 26 21.368422772227753 25.970079835792724 28.13947432147264 24.522023070506883 27 21.772694775118293 24.86993530879193 29.40850595212928 23.948863963960502 28 20.74687979274213 25.17373990521181 31.757742380621078 22.321637921424976 29 22.403943357715857 24.555944633858527 31.0182907375874 22.021821270838217 30 24.164837656971315 24.59803427903705 30.00213331078302 21.234994753208614 31 27.298594321165133 24.23104716730922 25.766454360602552 22.70390415092309 32 27.72174900733782 24.68913241517687 26.092504968115655 21.496613609369657 33 26.986669690458527 23.836432719990466 25.799174735450244 23.37772285410076 34 22.45487375028348 26.557749299466867 27.503949507801 23.483427442448658 35 23.289027094968844 24.87920848404245 28.249166855653655 23.582597565335046 36 27.46402200192959 26.27047305686138 24.982126315061173 21.283378626147854 37 23.251309775944712 28.419255147813455 25.661230247656242 22.668204828585594 38 24.92355636360841 28.384949204140547 24.13716227384023 22.554332158410816 39 23.61416479921894 27.043125550144335 24.442888771866436 24.89982087877029 40 25.530204605645007 24.575259745002096 26.16952517498914 23.725010474363756 41 22.482549133414565 24.24219419662591 27.016891593217995 26.25836507674153 42 23.847339511606364 25.399275058714093 25.51583839113773 25.237547038541813 43 23.37829942458266 24.953201695885976 26.266485111028253 25.402013768503107 44 22.9440938041736 25.472451462374934 27.448935074319934 24.13451965913153 45 22.18989156631137 26.98479583639236 26.154390199839327 24.67092239745694 46 24.176513209229743 26.236935873831 27.325356801033212 22.26119411590604 47 22.574416030196918 26.735333007891327 27.563624552677403 23.12662640923435 48 23.14651809085982 26.04109410014645 27.738517598853008 23.073870210140722 49 23.116440330720827 24.040154290260958 29.067464512086836 23.77594086693138 50 22.414898196871913 26.348358119457714 28.084796220772677 23.15194746289769 51 22.49840482166675 27.279038972320773 26.440849634262126 23.78170657175035 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 699.0 1 1534.5 2 2370.0 3 13902.0 4 25434.0 5 18136.5 6 10839.0 7 10663.0 8 10487.0 9 10503.5 10 10520.0 11 10232.0 12 9944.0 13 9648.0 14 9352.0 15 8788.5 16 8225.0 17 7885.0 18 7545.0 19 7332.5 20 7120.0 21 7360.0 22 7600.0 23 8102.0 24 8604.0 25 9280.5 26 12074.0 27 14191.0 28 15745.5 29 17300.0 30 21137.0 31 24974.0 32 29768.0 33 34562.0 34 40592.5 35 46623.0 36 50373.0 37 54123.0 38 60312.0 39 66501.0 40 81202.0 41 95903.0 42 105494.5 43 115086.0 44 122207.0 45 129328.0 46 143226.5 47 157125.0 48 156101.5 49 155078.0 50 151794.5 51 148511.0 52 144045.0 53 139579.0 54 131070.5 55 122562.0 56 121650.0 57 120738.0 58 116483.0 59 112228.0 60 107150.0 61 102072.0 62 93213.0 63 84354.0 64 75137.0 65 65920.0 66 57332.5 67 48745.0 68 41653.5 69 34562.0 70 28571.5 71 22581.0 72 19883.0 73 17185.0 74 13867.0 75 8387.0 76 6225.0 77 4430.5 78 2636.0 79 2128.5 80 1621.0 81 1180.0 82 739.0 83 608.5 84 478.0 85 351.5 86 225.0 87 172.5 88 120.0 89 95.0 90 70.0 91 66.0 92 62.0 93 38.0 94 14.0 95 9.0 96 4.0 97 2.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2081272.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.453666265591565 #Duplication Level Percentage of deduplicated Percentage of total 1 77.66178938788015 18.214536898920016 2 6.515528722825644 3.0562607241805746 3 2.7147405294335782 1.9101185512503152 4 1.626716398454999 1.5260985407251448 5 1.1711702442002025 1.3734118023831465 6 0.886577340068144 1.2476093431556476 7 0.6813233981182304 1.1185672118882626 8 0.5883896649508881 1.1039915868705092 9 0.5292705736935516 1.117200185964607 >10 5.720936200615602 30.97271392263749 >50 1.560792789492297 25.73253956149861 >100 0.3355159592735983 10.107004133292797 >500 0.00434927459591726 0.7190482168483256 >1k 0.0026924080831868752 1.1509240322910375 >5k 0.0 0.0 >10k+ 2.071083140912981E-4 0.6499752880934571 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13381 0.642924134855992 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCG 3529 0.1695597692180551 No Hit GAATCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTTC 3299 0.15850883498168428 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGC 2472 0.1187735192709074 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2161 0.10383073428172772 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.029981665058675656 0.0 2 0.0 0.0 0.0 0.13472530260340793 0.0 3 0.0 0.0 0.0 0.19377572945775468 0.0 4 0.0 0.0 0.0 0.3338823565588736 0.0 5 0.0 0.0 0.0 0.6915482454960236 0.0 6 0.0 0.0 0.0 0.9814190552700464 0.0 7 0.0 0.0 0.0 1.2121913906495643 0.0 8 0.0 0.0 0.0 1.8069238427269478 0.0 9 0.0 0.0 0.0 2.1099596785042993 0.0 10 0.0 0.0 0.0 2.7104097878605007 0.0 11 0.0 0.0 0.0 2.9798603930673164 0.0 12 0.0 0.0 0.0 3.347376027736884 0.0 13 0.0 0.0 0.0 3.469224589577912 0.0 14 0.0 0.0 0.0 3.5264011623660916 0.0 15 0.0 0.0 0.0 3.604382320042743 0.0 16 0.0 0.0 0.0 3.7239245999561805 0.0 17 0.0 0.0 0.0 3.856343620631998 0.0 18 0.0 0.0 0.0 4.060017143362328 0.0 19 0.0 0.0 0.0 4.162406451439312 0.0 20 0.0 0.0 0.0 4.270369274174639 0.0 21 0.0 0.0 0.0 4.38313685092578 0.0 22 0.0 0.0 0.0 4.505994411110128 0.0 23 0.0 0.0 0.0 4.645236182488401 0.0 24 0.0 0.0 0.0 4.752718529822147 0.0 25 0.0 0.0 0.0 4.8405974807713745 0.0 26 0.0 0.0 0.0 4.9305905234875596 0.0 27 0.0 0.0 0.0 5.031922785681064 0.0 28 0.0 0.0 0.0 5.130035862683974 0.0 29 0.0 0.0 0.0 5.248809381954882 0.0 30 0.0 0.0 0.0 5.407942834958622 0.0 31 0.0 0.0 0.0 5.534788340976095 0.0 32 0.0 0.0 0.0 5.658462709343133 0.0 33 0.0 0.0 0.0 5.784010931776336 0.0 34 4.8047540158134065E-5 0.0 0.0 5.918351854058479 0.0 35 4.8047540158134065E-5 0.0 0.0 6.084067820063884 0.0 36 4.8047540158134065E-5 0.0 0.0 6.217880219404288 0.0 37 4.8047540158134065E-5 0.0 0.0 6.356497372760504 0.0 38 4.8047540158134065E-5 0.0 0.0 6.532831845140856 0.0 39 4.8047540158134065E-5 0.0 0.0 6.815639666511633 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 9920 0.0 43.59375 1 CGGTCTA 405 0.0 41.666668 31 TACGGGA 670 0.0 39.626865 4 GTACGAG 285 0.0 39.473686 1 TAGGGAC 1800 0.0 38.5 5 ACGGGAT 745 0.0 37.75168 5 CACGACG 465 0.0 37.741936 26 GCGCGAC 1445 0.0 37.525948 9 TCACGAC 485 0.0 37.113403 25 GGGCGAT 3850 0.0 36.993507 7 TATGGGA 1560 0.0 36.92308 4 GTTTTTT 12325 0.0 36.876266 2 ATGGGCG 790 0.0 36.740505 5 TAGGGCG 980 0.0 36.734695 5 CGTAAGG 325 0.0 36.692307 2 CATATGC 1290 0.0 36.45349 33 CTCACGA 500 0.0 36.449997 24 CGGGATA 315 0.0 36.428574 6 GGCGATT 1090 0.0 36.330273 8 ACCCGCT 1400 0.0 36.321426 34 >>END_MODULE