SRR1546336_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546336_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1995421
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12532	0.6280378927554636	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6174	0.3094083905100728	No Hit
GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG	2532	0.12689051583600652	No Hit
GGGGAGGGAGTGTTCTGCTGGTCTCCAATTACCAAGAATTCTCCAAAAATT	2026	0.10153245856388202	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	20	7.034535E-4	45.000004	10
GTCGACT	40	6.8193913E-9	45.000004	33
CGCATTG	20	7.034535E-4	45.000004	28
CATTGCG	35	1.2125383E-7	45.000004	1
TAACGTT	30	2.166309E-6	45.000004	33
TCCTACG	30	2.166309E-6	45.000004	27
TACGCTA	20	7.034535E-4	45.000004	36
ACGGATC	30	2.166309E-6	45.000004	15
TCGCTAA	35	1.2125383E-7	45.000004	11
ACTACGT	20	7.034535E-4	45.000004	32
ACGCTAA	30	2.166309E-6	45.000004	25
ATGCGTA	30	2.166309E-6	45.000004	20
TTACGGC	35	1.2125383E-7	45.000004	31
TCGAGTA	20	7.034535E-4	45.000004	1
TAGGCCG	20	7.034535E-4	45.000004	28
CCGCGAA	20	7.034535E-4	45.000004	38
TGCACTA	20	7.034535E-4	45.000004	22
TGCGTAC	35	1.2125383E-7	45.000004	17
GTCGAAC	25	3.8918413E-5	45.0	30
CTATACG	50	2.1827873E-11	45.0	1