##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546336_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1995421 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.11190821385562 31.0 31.0 33.0 30.0 34.0 2 31.42806254920641 31.0 31.0 34.0 30.0 34.0 3 31.48617860591825 31.0 31.0 34.0 30.0 34.0 4 35.35892375593922 37.0 35.0 37.0 33.0 37.0 5 35.26929354757718 37.0 35.0 37.0 33.0 37.0 6 35.297170872713075 37.0 35.0 37.0 32.0 37.0 7 35.7587947606044 37.0 35.0 37.0 35.0 37.0 8 35.66745513853969 37.0 35.0 37.0 35.0 37.0 9 37.41795039743493 39.0 37.0 39.0 35.0 39.0 10 36.91728061396567 39.0 37.0 39.0 32.0 39.0 11 36.58401660601948 39.0 35.0 39.0 32.0 39.0 12 35.66347953639858 37.0 35.0 39.0 31.0 39.0 13 35.253150087124475 37.0 35.0 39.0 30.0 39.0 14 36.115083483635786 38.0 35.0 40.0 30.0 41.0 15 36.39887221794298 38.0 35.0 40.0 31.0 41.0 16 36.532732190349805 38.0 35.0 40.0 31.0 41.0 17 36.4071075727879 38.0 35.0 40.0 31.0 41.0 18 36.34602973507846 38.0 35.0 40.0 31.0 41.0 19 36.21934719540388 37.0 35.0 40.0 31.0 41.0 20 36.02494060150715 36.0 34.0 40.0 31.0 41.0 21 35.864983379447246 36.0 34.0 40.0 30.0 41.0 22 35.73965093080608 36.0 34.0 40.0 30.0 41.0 23 35.7175683727895 36.0 34.0 40.0 30.0 41.0 24 35.71712385506618 36.0 34.0 40.0 30.0 41.0 25 35.671074926043175 36.0 34.0 40.0 30.0 41.0 26 35.54253312960022 36.0 34.0 40.0 30.0 41.0 27 35.417009242661074 36.0 34.0 40.0 30.0 41.0 28 35.36937317989537 36.0 34.0 40.0 29.0 41.0 29 35.28881273676081 36.0 34.0 40.0 29.0 41.0 30 35.10678247848449 36.0 34.0 40.0 29.0 41.0 31 34.84722622444086 35.0 34.0 40.0 27.0 41.0 32 34.587082124524095 35.0 33.0 40.0 26.0 41.0 33 34.33909235193977 35.0 33.0 40.0 24.0 41.0 34 34.05934186319579 35.0 33.0 40.0 23.0 41.0 35 33.82367931378892 35.0 33.0 40.0 23.0 41.0 36 33.60692705950273 35.0 33.0 40.0 22.0 41.0 37 33.41868658293162 35.0 32.0 40.0 21.0 41.0 38 33.36382898646451 35.0 32.0 40.0 22.0 41.0 39 33.331597191770555 35.0 32.0 39.0 21.0 41.0 40 33.07101057871998 35.0 32.0 39.0 20.0 41.0 41 32.99962263602518 35.0 32.0 39.0 20.0 41.0 42 32.872433937499906 35.0 32.0 39.0 19.0 41.0 43 32.811136096092 35.0 31.0 39.0 19.0 41.0 44 32.56669595037839 35.0 31.0 39.0 18.0 41.0 45 32.53121070691348 35.0 31.0 39.0 18.0 41.0 46 32.476753026053146 35.0 31.0 39.0 18.0 41.0 47 32.43378214421919 35.0 31.0 38.0 18.0 40.0 48 32.38816319964559 35.0 31.0 38.0 18.0 40.0 49 32.41669903243476 35.0 31.0 38.0 18.0 40.0 50 32.232932799644786 35.0 31.0 38.0 18.0 40.0 51 32.02288589726178 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 0.0 13 9.0 14 40.0 15 96.0 16 314.0 17 759.0 18 1704.0 19 3200.0 20 5530.0 21 8721.0 22 12882.0 23 18373.0 24 25225.0 25 35125.0 26 44431.0 27 49665.0 28 53684.0 29 58585.0 30 67573.0 31 79294.0 32 96936.0 33 123826.0 34 216030.0 35 281457.0 36 138950.0 37 167249.0 38 223125.0 39 282583.0 40 53.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.746612870166246 23.631704788112383 26.383655378990202 16.238026962731173 2 30.6233621877288 26.340807278263583 30.10908474953406 12.926745784473553 3 28.766711385717603 25.73236424794567 32.28742205278986 13.213502313546865 4 25.190974736659584 28.215148582680044 31.547778639194433 15.046098041465935 5 22.9011321420392 31.786324790608095 31.329579071283703 13.982963996069001 6 19.723156166042152 40.856941968637194 28.820133696097216 10.599768169223438 7 84.96537823346551 4.48627131818298 8.614823638720852 1.9335268096306493 8 85.74255758559221 3.7723367650235216 8.159230558363372 2.3258750910208925 9 82.77000191939446 4.439213579490243 9.830707404602839 2.960077096512465 10 52.803694057544746 20.47973836097746 14.205623775634315 12.510943805843478 11 45.04082095958697 19.741949192676632 20.155947040749798 15.061282806986595 12 41.39352046510486 18.245122207293598 25.683502378696026 14.67785494890552 13 24.618463973266795 34.288102610927716 24.93082913330069 16.162604282504795 14 17.45235717174471 38.08695007219028 28.776233185879068 15.684459570185942 15 16.35228856466881 20.9598375480663 47.15085187536865 15.537022011896237 16 19.53998679977809 16.78698379940875 44.28148245407861 19.391546946734547 17 17.921431116541324 17.247438009322344 30.054409570712142 34.77672130342419 18 22.93049937832668 21.88946593225189 33.56424533970526 21.615789349716174 19 28.691038131802767 25.708659977017383 24.998133226020975 20.60216866515888 20 31.735708905539234 22.558848483603207 25.095205472930278 20.610237137927285 21 25.021486693785423 27.1595317479369 27.657120978480233 20.161860579797448 22 23.4100974180386 23.13356429545444 26.59669312891866 26.859645157588297 23 21.455021271200415 28.211540321566225 24.521391726357493 25.812046680875866 24 22.91250818749527 21.90304702616641 35.782674433114614 19.401770353223704 25 20.77576611652378 21.89412660285724 32.99799891852396 24.332108362095017 26 17.075694803252045 30.188115690874255 28.221162351203077 24.51502715467062 27 18.48672535770647 30.019980745917778 28.580334676241254 22.9129592201345 28 15.966555428653903 27.643389540352636 36.50808526120553 19.88196976978793 29 19.026761771074877 24.758534665115782 34.65489237609507 21.559811187714274 30 21.47241108517952 26.828924823383137 31.492602312995604 20.206061778441743 31 29.721296909273782 24.357867337268676 24.89680122640786 21.024034527049682 32 30.55685993081159 24.90221361807859 26.433770116682144 18.10715633442767 33 28.533176708073132 26.375085758844875 24.982447313123394 20.109290219958595 34 21.65788572937741 27.633065904388097 28.76285255091532 21.94619581531917 35 21.164255563111745 26.419487416439942 30.47427084309527 21.94198617735305 36 30.254968750955314 27.057047109356873 24.938897606069098 17.74908653361872 37 24.123230135394987 30.866919812911664 26.3811496421056 18.62870040958775 38 24.533419263403562 30.748799376171743 22.14495086500543 22.572830495419264 39 23.52095121781318 28.957598421586223 24.30309192897138 23.218358431629216 40 25.717881088752698 23.23755237616523 24.798175422630113 26.24639111245196 41 20.250613780249882 23.235046639280633 25.901150684492148 30.613188895977338 42 23.814924269114137 25.18496096813655 22.89396573454925 28.10614902820006 43 23.495192242639522 25.979429904766967 23.696653488161147 26.828724364432365 44 21.88094642684426 27.672405973476273 26.875280955748188 23.57136664393128 45 20.50093689502115 32.056994488882296 23.99764260273897 23.44442601335758 46 24.204065207292093 29.796318671598627 26.442239507352085 19.557376613757196 47 23.260053893388914 25.950363356905637 26.720125727853922 24.06945702185153 48 24.00536027234353 22.315591546846505 30.06568538669283 23.613362794117133 49 22.930900296228216 20.783333441915264 31.50332686686168 24.78243939499484 50 20.563580317136083 27.554987143064047 27.207591781383478 24.673840758416393 51 20.013019808852366 29.01112096144122 25.421302071091766 25.55455715861465 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1233.0 1 1929.5 2 2626.0 3 14440.0 4 26254.0 5 18627.5 6 11001.0 7 11335.5 8 11670.0 9 11795.5 10 11921.0 11 11970.5 12 12020.0 13 11735.0 14 11450.0 15 10644.5 16 9839.0 17 9488.5 18 9138.0 19 8507.5 20 7877.0 21 8036.0 22 8195.0 23 7640.5 24 7086.0 25 7350.5 26 9617.5 27 11620.0 28 13719.0 29 15818.0 30 18157.5 31 20497.0 32 20534.5 33 20572.0 34 26913.0 35 33254.0 36 32229.5 37 31205.0 38 41652.0 39 52099.0 40 75454.0 41 98809.0 42 125575.0 43 152341.0 44 160111.5 45 167882.0 46 168113.5 47 168345.0 48 162462.0 49 156579.0 50 152174.5 51 147770.0 52 140524.0 53 133278.0 54 123621.0 55 113964.0 56 109216.0 57 104468.0 58 104458.5 59 104449.0 60 99205.5 61 93962.0 62 84801.5 63 75641.0 64 65962.0 65 56283.0 66 46044.5 67 35806.0 68 28822.0 69 21838.0 70 19104.0 71 16370.0 72 14030.5 73 11691.0 74 8866.0 75 4656.5 76 3272.0 77 2467.5 78 1663.0 79 1406.0 80 1149.0 81 825.0 82 501.0 83 346.0 84 191.0 85 135.5 86 80.0 87 53.0 88 26.0 89 20.0 90 14.0 91 15.5 92 17.0 93 9.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1995421.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.998346865140253 #Duplication Level Percentage of deduplicated Percentage of total 1 82.70192284508995 16.53901739470176 2 7.348204708917501 2.9390389320997823 3 2.3319571656667364 1.399058648209582 4 1.1582832222733048 0.9265499858837557 5 0.6340611553515689 0.6340087459216128 6 0.4348323196108461 0.5217556533450737 7 0.31992082757913404 0.4478521375517175 8 0.24761152687752985 0.3961456961843073 9 0.198473585060444 0.35722292378460097 >10 2.3088155471396075 10.753254829102588 >50 0.9364922274622973 13.718373447696381 >100 1.3650715981559096 48.02766423260172 >500 0.01032428251621575 1.3474341152360034 >1k 0.0035253647616346464 1.0506229377795993 >5k 2.51811768688189E-4 0.3109114709222665 >10k+ 2.51811768688189E-4 0.6310888489792427 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12532 0.6280378927554636 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6174 0.3094083905100728 No Hit GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG 2532 0.12689051583600652 No Hit GGGGAGGGAGTGTTCTGCTGGTCTCCAATTACCAAGAATTCTCCAAAAATT 2026 0.10153245856388202 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11446206088840401 0.0 2 0.0 0.0 0.0 0.3698467641665593 0.0 3 0.0 0.0 0.0 0.50766229281941 0.0 4 0.0 0.0 0.0 0.72556117230399 0.0 5 0.0 0.0 0.0 1.1540922943078178 0.0 6 0.0 0.0 0.0 1.5436341503873117 0.0 7 0.0 0.0 0.0 1.800923213697761 0.0 8 0.0 0.0 0.0 2.4576768511507097 0.0 9 0.0 0.0 0.0 2.7744521081014986 0.0 10 0.0 0.0 0.0 3.398931854480834 0.0 11 0.0 0.0 0.0 3.786168432626498 0.0 12 0.0 0.0 0.0 4.238403825558616 0.0 13 0.0 0.0 0.0 4.399422477762838 0.0 14 0.0 0.0 0.0 4.461063605123932 0.0 15 0.0 0.0 0.0 4.5676075374570075 0.0 16 0.0 0.0 0.0 4.788212612776952 0.0 17 0.0 0.0 0.0 5.04520098766125 0.0 18 0.0 0.0 0.0 5.533719450682337 0.0 19 0.0 0.0 0.0 5.693334890231184 0.0 20 0.0 0.0 0.0 5.883219631345966 0.0 21 0.0 0.0 0.0 6.052156412105515 0.0 22 0.0 0.0 0.0 6.208965426343614 0.0 23 0.0 0.0 0.0 6.393137087361514 0.0 24 0.0 0.0 0.0 6.527695158064389 0.0 25 5.011473769194571E-5 0.0 0.0 6.634840467249768 0.0 26 5.011473769194571E-5 0.0 0.0 6.746445988089731 0.0 27 5.011473769194571E-5 0.0 0.0 6.85975541001122 0.0 28 5.011473769194571E-5 0.0 0.0 6.9696069150319655 0.0 29 5.011473769194571E-5 0.0 0.0 7.084620238034981 0.0 30 5.011473769194571E-5 0.0 0.0 7.241930399649998 0.0 31 5.011473769194571E-5 0.0 0.0 7.3769395029921006 0.0 32 5.011473769194571E-5 0.0 0.0 7.498016709255841 0.0 33 5.011473769194571E-5 0.0 0.0 7.628415256730284 0.0 34 5.011473769194571E-5 0.0 0.0 7.755756805205518 0.0 35 5.011473769194571E-5 0.0 0.0 7.905900559330587 0.0 36 5.011473769194571E-5 0.0 0.0 8.039406220541931 0.0 37 5.011473769194571E-5 0.0 0.0 8.169253505901763 0.0 38 5.011473769194571E-5 0.0 0.0 8.319146686338371 0.0 39 5.011473769194571E-5 0.0 0.0 8.475655012150318 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATCG 20 7.034535E-4 45.000004 10 GTCGACT 40 6.8193913E-9 45.000004 33 CGCATTG 20 7.034535E-4 45.000004 28 CATTGCG 35 1.2125383E-7 45.000004 1 TAACGTT 30 2.166309E-6 45.000004 33 TCCTACG 30 2.166309E-6 45.000004 27 TACGCTA 20 7.034535E-4 45.000004 36 ACGGATC 30 2.166309E-6 45.000004 15 TCGCTAA 35 1.2125383E-7 45.000004 11 ACTACGT 20 7.034535E-4 45.000004 32 ACGCTAA 30 2.166309E-6 45.000004 25 ATGCGTA 30 2.166309E-6 45.000004 20 TTACGGC 35 1.2125383E-7 45.000004 31 TCGAGTA 20 7.034535E-4 45.000004 1 TAGGCCG 20 7.034535E-4 45.000004 28 CCGCGAA 20 7.034535E-4 45.000004 38 TGCACTA 20 7.034535E-4 45.000004 22 TGCGTAC 35 1.2125383E-7 45.000004 17 GTCGAAC 25 3.8918413E-5 45.0 30 CTATACG 50 2.1827873E-11 45.0 1 >>END_MODULE