SRR1546335_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546335_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1637955
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8806	0.5376216074312176	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4607	0.281265358327915	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAC	20	7.034165E-4	45.000004	31
CCTAGAC	20	7.034165E-4	45.000004	19
TAGCGTC	20	7.034165E-4	45.000004	12
CCAATCG	20	7.034165E-4	45.000004	17
AATGCGT	20	7.034165E-4	45.000004	16
TACGATA	20	7.034165E-4	45.000004	22
TCGCTAA	40	6.8175723E-9	45.000004	12
ATCGGCA	20	7.034165E-4	45.000004	41
ATCGCTA	40	6.8175723E-9	45.000004	11
TCGAACG	40	6.8175723E-9	45.000004	1
AGCGTGC	25	3.8915347E-5	45.0	43
AACCACG	35	1.2123564E-7	45.0	1
TAGCCCG	25	3.8915347E-5	45.0	39
CGTAGGT	25	3.8915347E-5	45.0	34
TATAGCG	25	3.8915347E-5	45.0	1
CCGTTTA	25	3.8915347E-5	45.0	28
CAATACG	25	3.8915347E-5	45.0	1
TACGTAG	90	0.0	45.0	1
CTAACCG	30	2.166069E-6	44.999996	26
TATTACG	30	2.166069E-6	44.999996	1