SRR1546333_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546333_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1753087
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8626	0.49204631601283905	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6374	0.3635872036014185	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGT	35	1.212411E-7	45.0	23
CTTAACG	20	7.0343027E-4	45.0	1
GTACACG	45	3.8562575E-10	45.0	1
ACGTTGC	20	7.0343027E-4	45.0	30
ACGTTAG	95	0.0	45.0	1
CTATACG	20	7.0343027E-4	45.0	1
GCACGTT	25	3.8916474E-5	45.0	15
TTCGTAC	45	3.8562575E-10	45.0	33
AGTATCC	20	7.0343027E-4	45.0	45
TTATACG	75	0.0	45.0	1
TACGCAT	25	3.8916474E-5	45.0	30
TATCTAG	95	0.0	45.0	1
TCGCTAA	45	3.8562575E-10	45.0	16
AGTCTAA	20	7.0343027E-4	45.0	29
TATTACG	25	3.8916474E-5	45.0	1
CGAATAT	195	0.0	45.0	14
CGTACCG	20	7.0343027E-4	45.0	45
TATAGCG	100	0.0	45.0	1
CCGCGTA	20	7.0343027E-4	45.0	14
CCAACGA	20	7.0343027E-4	45.0	35