##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546333_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1753087 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.16798481763883 31.0 31.0 33.0 30.0 34.0 2 31.498220567490375 31.0 31.0 34.0 30.0 34.0 3 31.54858657898895 31.0 31.0 34.0 30.0 34.0 4 35.405647295313926 37.0 35.0 37.0 33.0 37.0 5 35.31684394442489 37.0 35.0 37.0 33.0 37.0 6 35.358745458725096 37.0 35.0 37.0 33.0 37.0 7 35.7938898639942 37.0 35.0 37.0 35.0 37.0 8 35.709427427161344 37.0 35.0 37.0 35.0 37.0 9 37.4859359518381 39.0 37.0 39.0 35.0 39.0 10 37.00199761905713 39.0 37.0 39.0 33.0 39.0 11 36.67903760623403 39.0 35.0 39.0 32.0 39.0 12 35.67213150288605 37.0 35.0 39.0 31.0 39.0 13 35.198830406020924 37.0 35.0 39.0 30.0 39.0 14 36.02824046952604 38.0 35.0 40.0 30.0 41.0 15 36.41180386369872 38.0 35.0 40.0 31.0 41.0 16 36.589833248435475 38.0 35.0 40.0 32.0 41.0 17 36.53613996339029 38.0 35.0 40.0 32.0 41.0 18 36.44358893768535 37.0 35.0 40.0 31.0 41.0 19 36.304562180884346 37.0 35.0 40.0 31.0 41.0 20 36.092346244082584 36.0 35.0 40.0 31.0 41.0 21 35.92890541085525 36.0 34.0 40.0 31.0 41.0 22 35.79320535717851 36.0 34.0 40.0 30.0 41.0 23 35.75693162974798 36.0 34.0 40.0 30.0 41.0 24 35.735013151087195 36.0 34.0 40.0 30.0 41.0 25 35.65633080389051 35.0 34.0 40.0 30.0 41.0 26 35.521137285257375 35.0 34.0 40.0 30.0 41.0 27 35.38465347127667 35.0 34.0 40.0 30.0 41.0 28 35.36064781725037 36.0 34.0 40.0 29.0 41.0 29 35.319485570311116 36.0 34.0 40.0 29.0 41.0 30 35.16834133160533 36.0 34.0 40.0 29.0 41.0 31 34.865328417813835 35.0 34.0 40.0 27.0 41.0 32 34.584599623407165 35.0 34.0 40.0 26.0 41.0 33 34.30966232708359 35.0 33.0 40.0 25.0 41.0 34 34.0505998846606 35.0 33.0 40.0 23.0 41.0 35 33.78337013508172 35.0 33.0 40.0 23.0 41.0 36 33.537180984172494 35.0 33.0 40.0 22.0 41.0 37 33.33840248658509 35.0 32.0 39.0 21.0 41.0 38 33.28574908147742 35.0 32.0 39.0 22.0 41.0 39 33.27535142294706 35.0 32.0 39.0 21.0 41.0 40 32.980509238845535 35.0 32.0 39.0 19.0 41.0 41 32.907571615099535 35.0 32.0 39.0 19.0 41.0 42 32.783896064485106 35.0 32.0 39.0 18.0 41.0 43 32.693887981600454 35.0 31.0 39.0 18.0 41.0 44 32.52811355055397 35.0 31.0 39.0 18.0 41.0 45 32.45824765114338 35.0 31.0 38.0 18.0 41.0 46 32.376758255580015 35.0 31.0 38.0 18.0 40.0 47 32.29095589665544 35.0 31.0 38.0 18.0 40.0 48 32.213310577284524 35.0 31.0 38.0 18.0 40.0 49 32.2297569943762 35.0 31.0 38.0 18.0 40.0 50 32.04358768275619 35.0 31.0 38.0 18.0 40.0 51 31.827829993605565 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 3.0 12 2.0 13 11.0 14 17.0 15 77.0 16 211.0 17 623.0 18 1378.0 19 2609.0 20 4616.0 21 7567.0 22 11276.0 23 16047.0 24 22615.0 25 31106.0 26 39459.0 27 44241.0 28 47009.0 29 50542.0 30 57346.0 31 68373.0 32 84159.0 33 108312.0 34 190536.0 35 269441.0 36 117550.0 37 143215.0 38 189999.0 39 244697.0 40 46.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.49278957633021 23.247220474511533 29.83987674313939 15.420113206018868 2 31.543728291864582 25.969618164985537 29.99081049599934 12.495843047150542 3 27.529666240180894 25.428002147069712 33.25299885288066 13.789332759868733 4 25.132295202691026 28.31017513677302 31.371061447606426 15.186468212929535 5 22.617702373014005 31.6015691177905 31.21801713206475 14.562711377130741 6 20.024847597409597 41.708141124770194 27.48528738163023 10.781723896189979 7 84.94826554529239 4.750534343132999 8.34596343478675 1.9552366767878606 8 86.68337623860081 3.4871058880705865 7.4354552854478975 2.3940625878806925 9 83.08555137309214 4.486257670041476 9.407690548158762 3.020500408707611 10 54.603793194519156 19.819837806110023 13.903987651497046 11.67238134787378 11 48.20314108769274 18.812300815646914 19.59298083894296 13.391577257717385 12 42.372968369510474 18.739743093183627 24.62490452555977 14.262384011746137 13 22.04876312470516 38.56226188432177 25.305874722703436 14.08310026826963 14 15.490560365800443 42.21193814111906 28.283593455430335 14.013908037650157 15 12.82771476829159 21.399052072144737 50.34724460337679 15.425988556186887 16 15.227823833044225 15.132392174489913 49.10703233781324 20.53275165465262 17 15.734472961125146 16.33096360876557 30.072780187178388 37.8617832429309 18 21.302251399959044 21.023428957034078 35.782650832502895 21.891668810503987 19 29.794242955426625 23.108778971037946 25.371644419244454 21.725333654290974 20 31.52547477677948 21.36454152018696 24.719993930706234 22.38998977232733 21 22.418111594005317 27.604847905437662 28.168197014751694 21.808843485805326 22 22.323763737909186 23.234214845013394 25.25527826057691 29.186743156500505 23 18.781840262348645 29.466991655291498 24.52890244465905 27.22226563770081 24 20.73365440505805 22.4531925683095 38.4136668630821 18.399486163550353 25 18.409069258970035 22.58096717390523 36.01213174246344 22.997831824661297 26 17.142446438767728 32.105080922966174 27.538165533142394 23.214307105123705 27 18.353738291368312 31.655245860587637 29.00631856833118 20.984697279712872 28 16.638535337949573 27.375595164415685 37.974840951989265 18.011028545645484 29 16.541962834702442 22.732414306876954 37.59619459844264 23.12942825997797 30 19.698851226436567 27.825030931151733 32.41396462354692 20.06215321886478 31 30.136781574445536 24.90458260200435 24.13987440440777 20.818761419142348 32 31.568769832871958 24.283107455591193 26.06328151426598 18.08484119727087 33 29.186400903092657 25.297945852088343 24.74492138724433 20.770731857574667 34 21.409319674380107 26.554700365697766 27.052108651766854 24.98387130815527 35 21.399622494491148 23.529351367045674 31.73288034193397 23.338145796529208 36 31.763112726293674 22.776222743081203 25.659479535242692 19.80118499538243 37 22.07420396135503 30.476182870559192 28.346453998004662 19.10315917008112 38 22.743252331458734 30.850950352150235 23.083680387795926 23.3221169285951 39 21.86542938256915 29.381542387799353 26.061113909349622 22.69191432028188 40 25.250372628397795 24.265709574025703 25.85176890821733 24.632148889359172 41 18.808364901456688 22.812843857720694 27.782933761986712 30.595857478835903 42 24.346937716154418 24.62553199014082 23.393590848600212 27.63393944510455 43 23.564318256880576 24.10228357177938 25.60078307579715 26.73261509554289 44 21.667778039538256 27.31786842295904 27.208290290213778 23.806063247288925 45 18.519331898530993 34.652016699684616 23.554621076991616 23.27403032479278 46 24.30324336441945 29.952478114320623 25.619093633116897 20.12518488814303 47 23.95751038026065 26.629026397434924 25.84988651447418 23.563576707830244 48 24.300676463860608 23.025782519635364 29.086177696828507 23.58736331967552 49 21.659449873280675 22.335115142602735 31.90794296004705 24.097492024069542 50 20.34240171765577 29.731097201679095 27.179826215127946 22.74667486553719 51 19.39487315803494 31.685991625059113 23.992477270095552 24.926657946810398 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1281.0 1 1639.0 2 1997.0 3 8840.0 4 15683.0 5 12080.0 6 8477.0 7 9133.0 8 9789.0 9 10582.5 10 11376.0 11 11404.0 12 11432.0 13 10996.5 14 10561.0 15 10201.0 16 9841.0 17 9353.0 18 8865.0 19 8217.5 20 7570.0 21 7103.5 22 6637.0 23 6614.5 24 6592.0 25 6506.0 26 7931.0 27 9442.0 28 10531.0 29 11620.0 30 13486.5 31 15353.0 32 18930.5 33 22508.0 34 25766.0 35 29024.0 36 31067.5 37 33111.0 38 41527.5 39 49944.0 40 74333.0 41 98722.0 42 128914.5 43 159107.0 44 165019.0 45 170931.0 46 164049.5 47 157168.0 48 153217.0 49 149266.0 50 139384.5 51 129503.0 52 118690.0 53 107877.0 54 97987.0 55 88097.0 56 85098.5 57 82100.0 58 80357.5 59 78615.0 60 72235.5 61 65856.0 62 58457.0 63 51058.0 64 45924.5 65 40791.0 66 33850.0 67 26909.0 68 23772.0 69 20635.0 70 17547.0 71 14459.0 72 12592.0 73 10725.0 74 8619.0 75 4894.5 76 3276.0 77 2612.5 78 1949.0 79 1510.5 80 1072.0 81 833.5 82 595.0 83 384.5 84 174.0 85 125.5 86 77.0 87 64.0 88 51.0 89 37.0 90 23.0 91 16.0 92 9.0 93 7.5 94 6.0 95 3.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1753087.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.08538308762077 #Duplication Level Percentage of deduplicated Percentage of total 1 82.97778854045167 16.666406705985604 2 6.86334770914588 2.757059360034788 3 2.283265001663139 1.3758075674688366 4 1.1179508042959438 0.8981788070959115 5 0.6880356158965986 0.6909729461605141 6 0.48038400421218114 0.5789218052260131 7 0.350587228453969 0.4929175152387632 8 0.27192461352422975 0.43693680268699026 9 0.24177659800713588 0.43705580333355115 >10 2.4155500861686234 11.032185866692231 >50 0.8685937869420353 12.785034363601447 >100 1.4276484975474901 49.2862695270241 >500 0.01200425163101636 1.557972402759789 >1k 5.716310300483981E-4 0.14317340994446787 >5k 5.716310300483981E-4 0.8611071167470001 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8626 0.49204631601283905 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6374 0.3635872036014185 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.052250686931110665 0.0 2 0.0 0.0 0.0 0.2433992152129358 0.0 3 0.0 0.0 0.0 0.3744252281831991 0.0 4 0.0 0.0 0.0 0.5999131817188764 0.0 5 0.0 0.0 0.0 1.0001785421944263 0.0 6 0.0 0.0 0.0 1.5104783732923694 0.0 7 0.0 0.0 0.0 1.8010515165533714 0.0 8 0.0 0.0 0.0 2.6532054598545307 0.0 9 0.0 0.0 0.0 3.0744053204433093 0.0 10 0.0 0.0 0.0 3.738605100602537 0.0 11 0.0 0.0 0.0 4.188782416388919 0.0 12 0.0 0.0 0.0 4.617454809715661 0.0 13 0.0 0.0 0.0 4.800560382913113 0.0 14 0.0 0.0 0.0 4.861310362805725 0.0 15 0.0 0.0 0.0 4.948185686163892 0.0 16 0.0 0.0 0.0 5.147091958356887 0.0 17 0.0 0.0 0.0 5.35552428373492 0.0 18 0.0 0.0 0.0 5.713122052699039 0.0 19 0.0 0.0 0.0 5.838557926674489 0.0 20 0.0 0.0 0.0 6.004265618306451 0.0 21 0.0 0.0 0.0 6.172483168262613 0.0 22 0.0 0.0 0.0 6.324329596876823 0.0 23 0.0 0.0 0.0 6.505609818565764 0.0 24 0.0 0.0 0.0 6.6344682266196715 0.0 25 0.0 0.0 0.0 6.732866081375311 0.0 26 0.0 0.0 0.0 6.832689991996975 0.0 27 0.0 0.0 0.0 6.941412491222626 0.0 28 0.0 0.0 0.0 7.04785330106264 0.0 29 0.0 0.0 0.0 7.162679319394873 0.0 30 0.0 0.0 0.0 7.329641940188935 0.0 31 0.0 0.0 0.0 7.467798232489318 0.0 32 0.0 0.0 0.0 7.583593968810447 0.0 33 0.0 0.0 0.0 7.703268577087161 0.0 34 0.0 0.0 0.0 7.822543889721389 0.0 35 0.0 0.0 0.0 7.985798765263789 0.0 36 0.0 0.0 0.0 8.11003675231178 0.0 37 0.0 0.0 0.0 8.24442825712586 0.0 38 0.0 0.0 0.0 8.363760611994728 0.0 39 0.0 0.0 0.0 8.487770430104153 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAACGT 35 1.212411E-7 45.0 23 CTTAACG 20 7.0343027E-4 45.0 1 GTACACG 45 3.8562575E-10 45.0 1 ACGTTGC 20 7.0343027E-4 45.0 30 ACGTTAG 95 0.0 45.0 1 CTATACG 20 7.0343027E-4 45.0 1 GCACGTT 25 3.8916474E-5 45.0 15 TTCGTAC 45 3.8562575E-10 45.0 33 AGTATCC 20 7.0343027E-4 45.0 45 TTATACG 75 0.0 45.0 1 TACGCAT 25 3.8916474E-5 45.0 30 TATCTAG 95 0.0 45.0 1 TCGCTAA 45 3.8562575E-10 45.0 16 AGTCTAA 20 7.0343027E-4 45.0 29 TATTACG 25 3.8916474E-5 45.0 1 CGAATAT 195 0.0 45.0 14 CGTACCG 20 7.0343027E-4 45.0 45 TATAGCG 100 0.0 45.0 1 CCGCGTA 20 7.0343027E-4 45.0 14 CCAACGA 20 7.0343027E-4 45.0 35 >>END_MODULE