##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546332_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1770606 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.18083243815959 31.0 31.0 33.0 30.0 34.0 2 31.51895622176814 31.0 31.0 34.0 30.0 34.0 3 31.607204539010937 31.0 31.0 34.0 30.0 34.0 4 35.48158540070462 37.0 35.0 37.0 33.0 37.0 5 35.40418873538212 37.0 35.0 37.0 33.0 37.0 6 35.440615811761624 37.0 35.0 37.0 33.0 37.0 7 35.795785171856416 37.0 35.0 37.0 35.0 37.0 8 35.69294580499558 37.0 35.0 37.0 35.0 37.0 9 37.4956094128225 39.0 37.0 39.0 35.0 39.0 10 37.00218569235618 39.0 37.0 39.0 33.0 39.0 11 36.711054859183804 39.0 35.0 39.0 32.0 39.0 12 36.03469659540293 37.0 35.0 39.0 32.0 39.0 13 35.73805126606371 37.0 35.0 39.0 31.0 39.0 14 36.70194893725651 38.0 35.0 41.0 31.0 41.0 15 36.98171755884709 38.0 35.0 41.0 32.0 41.0 16 37.059080902244766 38.0 35.0 41.0 32.0 41.0 17 36.97895805165011 38.0 35.0 41.0 32.0 41.0 18 36.90518443967771 38.0 35.0 40.0 32.0 41.0 19 36.76476810764224 38.0 35.0 40.0 31.0 41.0 20 36.590620951244944 38.0 35.0 40.0 31.0 41.0 21 36.42161723161448 38.0 35.0 40.0 31.0 41.0 22 36.3127827421798 38.0 35.0 40.0 31.0 41.0 23 36.26377353290342 38.0 35.0 40.0 31.0 41.0 24 36.24162744280772 38.0 35.0 40.0 31.0 41.0 25 36.161854190034376 38.0 35.0 40.0 31.0 41.0 26 36.035356821336876 37.0 35.0 40.0 30.0 41.0 27 35.925312011819685 37.0 35.0 40.0 30.0 41.0 28 35.881475607786264 37.0 35.0 40.0 30.0 41.0 29 35.786875228029274 37.0 35.0 40.0 30.0 41.0 30 35.637013542256156 37.0 34.0 40.0 30.0 41.0 31 35.40845055308748 37.0 34.0 40.0 29.0 41.0 32 35.19690264237216 37.0 34.0 40.0 28.0 41.0 33 34.97203386863029 37.0 34.0 40.0 27.0 41.0 34 34.722160096599694 36.0 34.0 40.0 25.0 41.0 35 34.509260671205226 36.0 33.0 40.0 24.0 41.0 36 34.27571972533698 36.0 33.0 40.0 23.0 41.0 37 34.06242947329897 36.0 33.0 40.0 23.0 41.0 38 33.96379714063998 35.0 33.0 40.0 23.0 41.0 39 33.91567519820897 35.0 33.0 40.0 23.0 41.0 40 33.67679144880341 35.0 33.0 40.0 22.0 41.0 41 33.57654384995872 35.0 33.0 40.0 22.0 41.0 42 33.4636192354482 35.0 32.0 40.0 22.0 41.0 43 33.40037026871026 35.0 32.0 39.0 22.0 41.0 44 33.182871852913635 35.0 32.0 39.0 21.0 41.0 45 33.1481628323862 35.0 32.0 39.0 21.0 41.0 46 33.05718945942802 35.0 32.0 39.0 21.0 41.0 47 32.970434981017796 35.0 32.0 39.0 21.0 41.0 48 32.875836860374356 35.0 32.0 39.0 20.0 41.0 49 32.87394937100631 35.0 32.0 39.0 20.0 40.0 50 32.70670154737982 35.0 31.0 38.0 20.0 40.0 51 32.48703212346507 35.0 31.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 5.0 11 1.0 12 5.0 13 9.0 14 20.0 15 78.0 16 221.0 17 519.0 18 1133.0 19 2183.0 20 3805.0 21 5993.0 22 9205.0 23 13137.0 24 18553.0 25 25226.0 26 32762.0 27 38252.0 28 41453.0 29 46031.0 30 53572.0 31 64007.0 32 79663.0 33 101840.0 34 172124.0 35 236205.0 36 139932.0 37 175843.0 38 231291.0 39 277493.0 40 45.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.03761537010492 23.134395794434223 29.124661274162634 14.703327561298222 2 31.330346785224943 25.596998993564917 29.989732328931453 13.08292189227869 3 28.58885601878679 25.41672173255936 32.630861976069205 13.36356027258464 4 25.52340836978978 27.5504544771677 31.52316212641322 15.402975026629301 5 22.611749875466366 32.091781006051036 30.508481277031706 14.787987841450892 6 20.179136408664604 41.7230033107309 27.423322862342047 10.674537418262448 7 87.28034356598813 4.096507071590179 6.975408419490277 1.6477409429314032 8 88.97851921884372 2.826659347138776 6.290671103565672 1.904150330451834 9 85.46672721090971 3.8084700944196506 8.129476574686858 2.5953261199837794 10 50.50897828201192 21.116612052596683 13.369490445644033 15.004919219747364 11 39.76243161945684 20.05296491709618 22.12722649759461 18.05737696585237 12 34.51846429979341 18.975028888414474 28.460933714219877 18.045573097572245 13 21.25904916169944 32.02073188501564 29.752073583846432 16.968145369438485 14 16.583983110867127 34.34727997081225 31.837800165593023 17.230936752727597 15 14.810466021237925 20.45503065052304 45.71288022292933 19.021623105309708 16 18.004965531575063 16.126456139875277 42.389950107477326 23.478628221072334 17 17.653955764297645 17.485821238604185 30.057844602356482 34.80237839474169 18 22.016981756528555 19.87760122805412 34.06178449638146 24.043632519035857 19 28.345097667126396 22.318573414977696 25.351094484035407 23.985234433860498 20 30.153348627532043 21.54273734529308 24.351719128931 23.952194898243878 21 23.82687057425537 24.81280420375849 28.099023724080908 23.261301497905237 22 23.69358287501567 21.90973034091153 24.995679445342443 29.401007338730356 23 21.237079282460357 26.644888812079024 24.18776396329844 27.930267942162175 24 21.736964632447876 22.326649745906206 34.804863419642764 21.131522202003154 25 22.184212636803444 21.31050047271951 32.360954385108826 24.14433250536822 26 20.174900570765036 27.459186289891708 27.018715626175442 25.347197513167806 27 19.740416557946826 27.668549637807622 27.8339167494067 24.75711705483885 28 19.19608314893319 24.612929132737605 34.04410693288061 22.146880785448598 29 18.905448191184263 21.98552360039444 34.22410180469286 24.884926403728443 30 21.576680526328275 25.633314243823868 30.04423344323921 22.745771786608653 31 29.133415339155068 23.847428507527933 23.668958537359526 23.350197615957473 32 29.734396020345578 23.19335865799619 25.87153776729549 21.200707554362744 33 28.42478789747691 24.056565944089197 24.430392758185615 23.088253400248277 34 22.174554926392435 25.450947302787856 26.937500494181087 25.436997276638618 35 22.14891398764039 23.93124162010069 29.251510499794986 24.668333892463938 36 31.9354503486377 22.580122285816266 24.421299826161214 21.063127539384823 37 23.693018096629064 28.539211998603868 25.81714960866506 21.950620296102013 38 23.878095973920793 29.4328608397351 22.395835098265792 24.29320808807832 39 22.863245691023298 27.68120067366766 24.09672168737709 25.358831947931954 40 25.205268704612998 24.1699169662816 24.92824490598134 25.69656942312406 41 20.187890473657042 22.59282979951497 26.636868958989186 30.58241076783881 42 23.867873485123173 24.802920581992833 23.11649231957872 28.212713613305272 43 23.968573471455535 24.40712388865733 25.063113984703545 26.561188655183592 44 22.285985702070366 25.807943720963333 27.031423139874143 24.87464743709216 45 20.28774329240949 30.354692122358106 24.395207064699882 24.962357520532517 46 23.83517281653852 27.723107229954035 26.556388038897417 21.885331914610028 47 23.827265919125995 25.625689735604645 26.4014693274506 24.145575017818757 48 23.71758595644655 24.42689113218864 27.76970144684927 24.08582146451554 49 23.186581317356882 22.755316541342342 29.67933012765121 24.378772013649563 50 22.201268944079033 27.25055715387839 27.237341339631744 23.310832562410834 51 22.08910395649851 29.41405371946102 23.735207042108748 24.761635281931724 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1006.0 1 1576.5 2 2147.0 3 9106.5 4 16066.0 5 11921.0 6 7776.0 7 8142.0 8 8508.0 9 8880.5 10 9253.0 11 9305.0 12 9357.0 13 9036.5 14 8716.0 15 8283.0 16 7850.0 17 7420.0 18 6990.0 19 6781.0 20 6572.0 21 6347.0 22 6122.0 23 5794.0 24 5466.0 25 6192.5 26 7835.5 27 8752.0 28 9711.0 29 10670.0 30 13623.5 31 16577.0 32 19376.0 33 22175.0 34 24182.5 35 26190.0 36 29205.0 37 32220.0 38 39498.0 39 46776.0 40 65518.5 41 84261.0 42 101108.5 43 117956.0 44 125582.5 45 133209.0 46 134597.0 47 135985.0 48 131988.0 49 127991.0 50 130005.0 51 132019.0 52 125753.5 53 119488.0 54 111554.5 55 103621.0 56 103694.0 57 103767.0 58 99120.0 59 94473.0 60 91681.5 61 88890.0 62 81864.5 63 74839.0 64 66682.0 65 58525.0 66 49582.5 67 40640.0 68 36292.0 69 31944.0 70 26367.5 71 20791.0 72 18260.0 73 15729.0 74 12357.5 75 7077.0 76 5168.0 77 4216.0 78 3264.0 79 2436.5 80 1609.0 81 1181.0 82 753.0 83 536.5 84 320.0 85 226.5 86 133.0 87 101.5 88 70.0 89 52.5 90 35.0 91 27.0 92 19.0 93 14.0 94 9.0 95 6.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1770606.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.21540508485492 #Duplication Level Percentage of deduplicated Percentage of total 1 81.27185186456536 15.616715555739452 2 6.709361331517329 2.5784619169153413 3 2.180052292198776 1.2567176370229798 4 1.1050128587460335 0.849330788191144 5 0.7492806235951023 0.7198865352306296 6 0.5345948928289852 0.6163474453202131 7 0.41178496904786144 0.5538830491676371 8 0.3613119654046451 0.5554204621804274 9 0.29427511115813515 0.508915392056485 >10 3.4365177989935365 15.60035611571979 >50 1.5871033903494485 22.442950789524257 >100 1.3520527238888769 37.11407780328415 >500 0.004730558404143142 0.5607936951537834 >1k 0.0017739594015536782 0.551476486562433 >5k 2.9565990025894637E-4 0.4746663279312998 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8355 0.471872342011718 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3955 0.22336985190381148 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04049461031985659 0.0 2 0.0 0.0 0.0 0.13746705930060105 0.0 3 0.0 0.0 0.0 0.20213418456731763 0.0 4 0.0 0.0 0.0 0.3203987787232168 0.0 5 0.0 0.0 0.0 0.5346192207639644 0.0 6 0.0 0.0 0.0 0.8317491299588954 0.0 7 0.0 0.0 0.0 1.0121393466417712 0.0 8 0.0 0.0 0.0 1.5814359603435209 0.0 9 0.0 0.0 0.0 1.8816156728261397 0.0 10 0.0 0.0 0.0 2.333833726983869 0.0 11 0.0 0.0 0.0 2.6276314436978074 0.0 12 0.0 0.0 0.0 2.910924282420821 0.0 13 0.0 0.0 0.0 3.021733801873483 0.0 14 0.0 0.0 0.0 3.063301491127896 0.0 15 0.0 0.0 0.0 3.117294304887705 0.0 16 0.0 0.0 0.0 3.240641904523084 0.0 17 0.0 0.0 0.0 3.38669359530014 0.0 18 0.0 0.0 0.0 3.6439501504004843 0.0 19 0.0 0.0 0.0 3.733298091162009 0.0 20 0.0 0.0 0.0 3.852692242091126 0.0 21 0.0 0.0 0.0 3.9756444968558786 0.0 22 0.0 0.0 0.0 4.092666578561238 0.0 23 0.0 0.0 0.0 4.234143564406763 0.0 24 0.0 0.0 0.0 4.338119265381457 0.0 25 0.0 0.0 0.0 4.41526799299223 0.0 26 0.0 0.0 0.0 4.494111055762829 0.0 27 0.0 0.0 0.0 4.571824561760211 0.0 28 0.0 0.0 0.0 4.656710753267525 0.0 29 0.0 0.0 0.0 4.749955664896651 0.0 30 0.0 0.0 0.0 4.874828166175874 0.0 31 0.0 0.0 0.0 4.97631884224949 0.0 32 0.0 0.0 0.0 5.07368663610086 0.0 33 0.0 0.0 0.0 5.180881573879225 0.0 34 0.0 0.0 0.0 5.285591486756512 0.0 35 0.0 0.0 0.0 5.418935663834868 0.0 36 0.0 0.0 0.0 5.525565823226624 0.0 37 0.0 0.0 0.0 5.634850441035442 0.0 38 0.0 0.0 0.0 5.740463999331302 0.0 39 0.0 0.0 0.0 5.859462805389793 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGT 25 3.8916627E-5 45.0 14 ACACGTA 20 7.034321E-4 45.0 26 CGTGCAA 20 7.034321E-4 45.0 29 CGTTGTA 20 7.034321E-4 45.0 20 CCAATCG 20 7.034321E-4 45.0 15 CGTTAGT 20 7.034321E-4 45.0 44 TCGTAAT 35 1.2124292E-7 45.0 21 ACCGTAG 20 7.034321E-4 45.0 44 CGCGTAG 20 7.034321E-4 45.0 15 CGATCTA 20 7.034321E-4 45.0 10 CAATCGT 20 7.034321E-4 45.0 16 CGGACTA 25 3.8916627E-5 45.0 34 ACTAACG 30 2.1661708E-6 44.999996 1 CGTTTTT 7270 0.0 43.60729 1 GTTACAC 115 0.0 43.043476 33 AGGGTAC 890 0.0 42.47191 6 TATAGCG 75 0.0 42.000004 1 ATCGCCA 140 0.0 41.785713 24 ATTCGGC 120 0.0 41.249996 17 TAGGGTA 850 0.0 40.764706 5 >>END_MODULE