FastQCFastQC Report
Thu 26 May 2016
SRR1546331_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1546331_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences691471
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38630.5586640654488764No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC9370.1355082136488732No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACGG351.2109922E-745.0000042
CGGATAC253.8891878E-545.014
TATTACG207.031335E-445.01
TATAGCG253.8891878E-545.01
CGTTTTT29050.043.1411361
CGGGATA750.042.06
CGACGGT700.041.78571728
CGGTAGT1350.041.66666812
TACGGGT556.002665E-1140.909094
GCGATAT451.9263098E-840.09
TATACTA4450.039.438244
AATGCGG403.4555524E-739.3752
TAGGGTA2900.038.7931025
ATACTAT4650.037.74193645
GGGCGAT15600.037.6442347
TGATTAG601.546141E-1037.5000041
TACGAAA601.546141E-1037.50000420
CATACGA601.546141E-1037.50000418
CCGCGAA301.13945134E-437.50000445
ACATACG601.546141E-1037.50000417