SRR1546331_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546331_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	691471
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3863	0.5586640654488764	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	937	0.1355082136488732	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATACGG	35	1.2109922E-7	45.000004	2
CGGATAC	25	3.8891878E-5	45.0	14
TATTACG	20	7.031335E-4	45.0	1
TATAGCG	25	3.8891878E-5	45.0	1
CGTTTTT	2905	0.0	43.141136	1
CGGGATA	75	0.0	42.0	6
CGACGGT	70	0.0	41.785717	28
CGGTAGT	135	0.0	41.666668	12
TACGGGT	55	6.002665E-11	40.90909	4
GCGATAT	45	1.9263098E-8	40.0	9
TATACTA	445	0.0	39.4382	44
AATGCGG	40	3.4555524E-7	39.375	2
TAGGGTA	290	0.0	38.793102	5
ATACTAT	465	0.0	37.741936	45
GGGCGAT	1560	0.0	37.644234	7
TGATTAG	60	1.546141E-10	37.500004	1
TACGAAA	60	1.546141E-10	37.500004	20
CATACGA	60	1.546141E-10	37.500004	18
CCGCGAA	30	1.13945134E-4	37.500004	45
ACATACG	60	1.546141E-10	37.500004	17