##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546331_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 691471 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.11138138837348 31.0 31.0 33.0 30.0 34.0 2 31.44726966134516 31.0 31.0 34.0 30.0 34.0 3 31.521180208569845 31.0 31.0 34.0 30.0 34.0 4 35.389769057559896 37.0 35.0 37.0 33.0 37.0 5 35.311869912114894 37.0 35.0 37.0 33.0 37.0 6 35.341415619744 37.0 35.0 37.0 33.0 37.0 7 35.73885383479568 37.0 35.0 37.0 35.0 37.0 8 35.63556389205043 37.0 35.0 37.0 35.0 37.0 9 37.34047993335946 39.0 37.0 39.0 35.0 39.0 10 36.85679948978338 39.0 37.0 39.0 32.0 39.0 11 36.613612139916206 39.0 35.0 39.0 32.0 39.0 12 36.14512683829112 38.0 35.0 39.0 32.0 39.0 13 35.93892585516963 38.0 35.0 39.0 31.0 39.0 14 36.862028920952575 39.0 35.0 41.0 31.0 41.0 15 37.06641204041818 39.0 35.0 41.0 31.0 41.0 16 37.12120392612272 39.0 35.0 41.0 32.0 41.0 17 37.0320042344509 39.0 35.0 41.0 32.0 41.0 18 36.93511513859583 38.0 35.0 40.0 31.0 41.0 19 36.84111842723701 38.0 35.0 40.0 31.0 41.0 20 36.693807838651225 38.0 35.0 40.0 31.0 41.0 21 36.54000384687138 38.0 35.0 40.0 31.0 41.0 22 36.43795618326727 38.0 35.0 40.0 30.0 41.0 23 36.34523067489454 38.0 35.0 40.0 30.0 41.0 24 36.352620717282434 38.0 35.0 40.0 30.0 41.0 25 36.29075839767684 38.0 35.0 40.0 30.0 41.0 26 36.16092504240959 38.0 35.0 40.0 30.0 41.0 27 36.044535490280865 38.0 35.0 40.0 30.0 41.0 28 35.96376854560784 38.0 35.0 40.0 30.0 41.0 29 35.85142543938936 38.0 34.0 40.0 30.0 41.0 30 35.67842324551572 38.0 34.0 40.0 29.0 41.0 31 35.49658915558281 38.0 34.0 40.0 28.0 41.0 32 35.322820479817665 38.0 34.0 40.0 27.0 41.0 33 35.12797499822842 38.0 34.0 40.0 26.0 41.0 34 34.883204067849555 37.0 34.0 40.0 25.0 41.0 35 34.670299983658026 37.0 33.0 40.0 24.0 41.0 36 34.46937326366543 37.0 33.0 40.0 23.0 41.0 37 34.27239898708695 37.0 33.0 40.0 23.0 41.0 38 34.15824669436607 37.0 33.0 40.0 23.0 41.0 39 34.072983537993636 37.0 33.0 40.0 23.0 41.0 40 33.88180415375337 36.0 33.0 40.0 22.0 41.0 41 33.753266586740445 36.0 33.0 40.0 21.0 41.0 42 33.642375457539075 36.0 32.0 40.0 21.0 41.0 43 33.603276203918895 36.0 32.0 40.0 21.0 41.0 44 33.41135492305534 35.0 32.0 40.0 21.0 41.0 45 33.36874142227223 35.0 32.0 40.0 21.0 41.0 46 33.27907171811977 35.0 32.0 40.0 20.0 41.0 47 33.18425790814076 35.0 32.0 39.0 20.0 41.0 48 33.0648226751375 35.0 32.0 39.0 20.0 41.0 49 33.04676985730421 35.0 31.0 39.0 20.0 41.0 50 32.92489345178612 35.0 31.0 39.0 20.0 41.0 51 32.720825602230605 35.0 31.0 39.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 4.0 13 9.0 14 14.0 15 39.0 16 117.0 17 237.0 18 510.0 19 961.0 20 1590.0 21 2663.0 22 3754.0 23 5402.0 24 7634.0 25 10323.0 26 13336.0 27 15433.0 28 16622.0 29 17931.0 30 21109.0 31 25134.0 32 30419.0 33 38070.0 34 58640.0 35 73568.0 36 56476.0 37 70961.0 38 98325.0 39 122175.0 40 14.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.96998283369802 22.735299094249793 26.64536907549268 14.649348996559509 2 33.73952052942206 23.856531944217473 28.887111679303977 13.516835847056493 3 30.364252441534063 24.644417480993418 31.293430960951362 13.697899116521157 4 26.172030352682903 27.453935161416748 30.49672365146188 15.877310834438466 5 23.04319342387461 31.092988715361887 30.30409084401226 15.559727016751246 6 21.423024248305424 40.32157530829203 27.50455189010096 10.750848553301584 7 84.69595977271642 4.6959308488714635 8.205260958160213 2.402848420251898 8 85.17320321459613 3.880278420931608 8.164767575212844 2.7817507892594193 9 79.94680904911414 5.519971191850417 10.387998918248197 4.145220840787249 10 43.69308329633492 24.47015131509492 16.999556018979828 14.837209369590337 11 35.39425369972132 24.41736529803853 23.499177839706945 16.689203162533207 12 30.977582573961886 22.364495401831746 28.667435076814503 17.990486947391865 13 23.83006662607687 28.7708378225551 29.692785380731802 17.706310170636225 14 19.93243389816782 31.80523839756114 30.84467750635963 17.417650197911406 15 18.222022326315926 23.09106238728739 40.24290244999429 18.444012836402393 16 21.910246416697156 20.454075442064816 36.47846402813711 21.15721411310091 17 21.675674034052044 20.725381107812186 29.88064575376263 27.71829910437314 18 24.988755855270863 22.28003777454152 31.750427711357382 20.980778658830232 19 28.10689096144307 24.136659382678378 26.1263306776423 21.630118978236254 20 29.112717670010746 23.58001998637687 25.7945741759235 21.512688167688886 21 25.657909008476132 25.12064858829944 28.70214369076939 20.519298712455043 22 24.608985770914472 22.500726711604678 27.791621051352838 25.098666466128005 23 22.699867384170847 26.823395341236296 26.271528379353583 24.20520889523928 24 22.53688151780769 24.87089118704906 32.12556998051979 20.46665731462346 25 22.812814998749044 24.766186868285146 30.026566551597973 22.394431581367837 26 21.383109342257303 26.738214617822003 27.77455598282502 24.10412005709567 27 21.332058755898657 25.945412027402448 29.504635769251347 23.217893447447544 28 20.211982859729474 25.660946012197183 32.406998992004006 21.720072136069334 29 21.240659405817453 24.93336669216786 31.31020679102956 22.515767110985134 30 23.599688200951306 25.021005942403946 30.333882404323536 21.04542345232121 31 27.90485790438066 24.271155261753567 26.192277044156587 21.631709789709184 32 27.22211054404306 24.676812187351313 26.39647938959118 21.704597879014447 33 26.565828501846067 25.049929787366352 26.363072348659593 22.021169362127985 34 22.775358619522727 25.791971029876887 28.823623839611496 22.609046510988893 35 23.09525634480694 26.210499066482907 28.566057000221267 22.12818758848889 36 27.56861820669269 25.751333027704703 26.12488448539418 20.555164280208423 37 23.345736842181378 28.375593481143824 27.054496862485916 21.224172814188883 38 23.82066637646409 28.67018284208593 25.443872555754325 22.065278225695657 39 22.845065085882126 27.874054009495698 25.56650965839493 23.714371246227245 40 24.40030022951071 25.035034007210715 26.852897663097945 23.71176810018063 41 21.822751785685877 24.57919421060319 26.89411414216937 26.703939861541553 42 23.507276516296418 26.028423462444554 25.572728285061846 24.89157173619718 43 23.161058092096415 25.842443139336286 26.745011721388174 24.25148704717913 44 22.98476725705055 26.898452718913735 27.28675533753404 22.830024686501677 45 20.994517485187377 28.890437921474653 26.16176238772125 23.953282205616723 46 23.5936141935092 26.777551046970878 27.723360777241563 21.90547398227836 47 22.891777095496412 27.04697666279569 27.4870529638987 22.574193277809194 48 23.59086642823777 25.573306761961096 28.379642819438562 22.456183990362575 49 23.143993023568594 24.343464874159583 28.99181599806789 23.520726104203938 50 21.7076348827355 27.618656458477652 27.857422798642318 22.816285860144532 51 22.329352930202422 28.317890410443823 26.215849977800946 23.136906681552805 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 268.0 1 547.5 2 827.0 3 4018.5 4 7210.0 5 5241.0 6 3272.0 7 3329.0 8 3386.0 9 3365.5 10 3345.0 11 3260.0 12 3175.0 13 3106.0 14 3037.0 15 2967.0 16 2897.0 17 2762.0 18 2627.0 19 2546.0 20 2465.0 21 2583.0 22 2701.0 23 2978.0 24 3255.0 25 3707.0 26 4770.5 27 5382.0 28 5944.0 29 6506.0 30 7530.5 31 8555.0 32 10515.5 33 12476.0 34 14215.5 35 15955.0 36 17703.0 37 19451.0 38 22219.0 39 24987.0 40 29818.0 41 34649.0 42 39197.0 43 43745.0 44 45536.0 45 47327.0 46 48288.0 47 49249.0 48 50759.0 49 52269.0 50 52176.5 51 52084.0 52 49305.0 53 46526.0 54 44030.0 55 41534.0 56 39260.5 57 36987.0 58 34742.5 59 32498.0 60 31226.5 61 29955.0 62 27220.5 63 24486.0 64 22676.5 65 20867.0 66 17899.0 67 14931.0 68 12647.5 69 10364.0 70 8690.0 71 7016.0 72 5803.5 73 4591.0 74 3781.0 75 2379.5 76 1788.0 77 1336.0 78 884.0 79 620.5 80 357.0 81 283.0 82 209.0 83 157.0 84 105.0 85 78.0 86 51.0 87 45.5 88 40.0 89 37.0 90 34.0 91 24.5 92 15.0 93 8.5 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 691471.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.396651205766272 #Duplication Level Percentage of deduplicated Percentage of total 1 73.85218533032605 20.971547476088773 2 5.627299655675616 3.1959293110509823 3 2.74751943110238 2.3406105289823893 4 1.8594351186636426 2.112069220177763 5 1.4213078543448128 2.0180191697922853 6 1.194624956559998 2.035400892788277 7 1.0484276670508563 2.0840284343002895 8 0.9060161252142561 2.058225911560727 9 0.8795092782251142 2.247760638539443 >10 10.342931433481363 57.36285922599128 >50 0.10027820878721334 1.7781302006495185 >100 0.019441693540316243 1.098056054945104 >500 5.116235142188484E-4 0.13613105629578756 >1k 5.116235142188484E-4 0.5612318788373825 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3863 0.5586640654488764 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 937 0.1355082136488732 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03731176000150404 0.0 2 0.0 0.0 0.0 0.1317481138037604 0.0 3 0.0 0.0 0.0 0.1930666651240616 0.0 4 0.0 0.0 0.0 0.28432139598045325 0.0 5 0.0 0.0 0.0 0.4901145528879736 0.0 6 0.0 0.0 0.0 0.7829684831323367 0.0 7 0.0 0.0 0.0 0.9821091556985037 0.0 8 0.0 0.0 0.0 1.5143079030067783 0.0 9 0.0 0.0 0.0 1.8138143175924948 0.0 10 0.0 0.0 0.0 2.2524444264473855 0.0 11 0.0 0.0 0.0 2.528088668939117 0.0 12 0.0 0.0 0.0 2.7813169315849833 0.0 13 0.0 0.0 0.0 2.885587392674458 0.0 14 0.0 0.0 0.0 2.9304193523661874 0.0 15 0.0 0.0 0.0 2.9859531346940074 0.0 16 0.0 0.0 0.0 3.099913083845888 0.0 17 0.0 0.0 0.0 3.226021047881979 0.0 18 0.0 0.0 0.0 3.4164845669594244 0.0 19 0.0 0.0 0.0 3.499351382776718 0.0 20 0.0 0.0 0.0 3.5987047902225835 0.0 21 0.0 0.0 0.0 3.716569458444389 0.0 22 0.0 0.0 0.0 3.843689757054164 0.0 23 0.0 0.0 0.0 3.9855612165947667 0.0 24 0.0 0.0 0.0 4.097351877374467 0.0 25 0.0 0.0 0.0 4.184123412261686 0.0 26 0.0 0.0 0.0 4.270461089474468 0.0 27 0.0 0.0 0.0 4.367645208548153 0.0 28 0.0 0.0 0.0 4.464540089172214 0.0 29 0.0 0.0 0.0 4.576909226851162 0.0 30 0.0 0.0 0.0 4.7235531208105614 0.0 31 0.0 0.0 0.0 4.84517788887748 0.0 32 0.0 0.0 0.0 4.958559361130113 0.0 33 0.0 0.0 0.0 5.081630321445151 0.0 34 0.0 0.0 0.0 5.209907573853423 0.0 35 0.0 0.0 0.0 5.3533698448669575 0.0 36 0.0 0.0 0.0 5.473114563011319 0.0 37 0.0 0.0 0.0 5.605875011388764 0.0 38 0.0 0.0 0.0 5.7716086430233515 0.0 39 0.0 0.0 0.0 6.024547667219594 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATACGG 35 1.2109922E-7 45.000004 2 CGGATAC 25 3.8891878E-5 45.0 14 TATTACG 20 7.031335E-4 45.0 1 TATAGCG 25 3.8891878E-5 45.0 1 CGTTTTT 2905 0.0 43.141136 1 CGGGATA 75 0.0 42.0 6 CGACGGT 70 0.0 41.785717 28 CGGTAGT 135 0.0 41.666668 12 TACGGGT 55 6.002665E-11 40.90909 4 GCGATAT 45 1.9263098E-8 40.0 9 TATACTA 445 0.0 39.4382 44 AATGCGG 40 3.4555524E-7 39.375 2 TAGGGTA 290 0.0 38.793102 5 ATACTAT 465 0.0 37.741936 45 GGGCGAT 1560 0.0 37.644234 7 TGATTAG 60 1.546141E-10 37.500004 1 TACGAAA 60 1.546141E-10 37.500004 20 CATACGA 60 1.546141E-10 37.500004 18 CCGCGAA 30 1.13945134E-4 37.500004 45 ACATACG 60 1.546141E-10 37.500004 17 >>END_MODULE