SRR1546330_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546330_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	221955
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	788	0.35502691987114504	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	613	0.2761821089860557	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACAC	20	7.020977E-4	45.0	26
ACGCCGG	35	1.2060082E-7	45.0	27
AGTCACG	20	7.020977E-4	45.0	1
GATCGAG	20	7.020977E-4	45.0	1
CTCCGAC	25	3.880605E-5	45.0	23
GTTTACG	25	3.880605E-5	45.0	1
CGTTGCA	20	7.020977E-4	45.0	33
CCGGATA	20	7.020977E-4	45.0	20
TAAGTTA	20	7.020977E-4	45.0	42
GTGATAG	20	7.020977E-4	45.0	1
ATTCGCT	20	7.020977E-4	45.0	39
TAAGTCA	20	7.020977E-4	45.0	12
ACGGGTG	20	7.020977E-4	45.0	5
TCTAGAG	45	3.8198777E-10	45.0	1
GACCCAC	20	7.020977E-4	45.0	12
GTATGGA	20	7.020977E-4	45.0	27
CGGGATA	25	3.880605E-5	45.0	6
CGAGCGT	20	7.020977E-4	45.0	40
TAGGAGA	20	7.020977E-4	45.0	10
ACTCATG	20	7.020977E-4	45.0	22