##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546330_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 221955 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.10550336779978 31.0 31.0 33.0 30.0 34.0 2 31.443693541483633 31.0 31.0 34.0 30.0 34.0 3 31.548102092766552 31.0 31.0 34.0 30.0 34.0 4 35.394246581514274 37.0 35.0 37.0 33.0 37.0 5 35.29704219323737 37.0 35.0 37.0 33.0 37.0 6 35.3317609425334 37.0 35.0 37.0 33.0 37.0 7 35.739906737852266 37.0 35.0 37.0 35.0 37.0 8 35.647856547498364 37.0 35.0 37.0 35.0 37.0 9 37.39291297785587 39.0 37.0 39.0 35.0 39.0 10 36.886936541190785 39.0 37.0 39.0 32.0 39.0 11 36.57689621770179 39.0 35.0 39.0 32.0 39.0 12 35.802703250658915 37.0 35.0 39.0 31.0 39.0 13 35.40886215674348 37.0 35.0 39.0 30.0 39.0 14 36.31898357775225 38.0 35.0 40.0 31.0 41.0 15 36.63011421234034 38.0 35.0 40.0 31.0 41.0 16 36.754229460926766 38.0 35.0 40.0 32.0 41.0 17 36.68903606586921 38.0 35.0 40.0 32.0 41.0 18 36.62220269874524 38.0 35.0 40.0 31.0 41.0 19 36.53165281250704 38.0 35.0 40.0 31.0 41.0 20 36.37447230294429 38.0 35.0 40.0 31.0 41.0 21 36.210844540560025 38.0 35.0 40.0 31.0 41.0 22 36.092275461242146 37.0 34.0 40.0 30.0 41.0 23 36.012313306751366 37.0 34.0 40.0 30.0 41.0 24 35.98823635421594 37.0 34.0 40.0 30.0 41.0 25 35.916379446284154 37.0 34.0 40.0 30.0 41.0 26 35.78064472528215 37.0 34.0 40.0 30.0 41.0 27 35.65360546056633 37.0 34.0 40.0 30.0 41.0 28 35.63373206280552 37.0 34.0 40.0 29.0 41.0 29 35.5941654839945 37.0 34.0 40.0 29.0 41.0 30 35.448338627199206 36.0 34.0 40.0 29.0 41.0 31 35.24417111576671 36.0 34.0 40.0 29.0 41.0 32 35.072568763938634 36.0 34.0 40.0 27.0 41.0 33 34.88736906129621 36.0 34.0 40.0 27.0 41.0 34 34.696974611970894 36.0 34.0 40.0 25.0 41.0 35 34.48182739744543 36.0 33.0 40.0 24.0 41.0 36 34.300439278232076 36.0 33.0 40.0 24.0 41.0 37 34.096893514451125 36.0 33.0 40.0 23.0 41.0 38 34.06104390529612 35.0 33.0 40.0 23.0 41.0 39 34.0201437228267 35.0 33.0 40.0 23.0 41.0 40 33.80345565542565 35.0 33.0 40.0 23.0 41.0 41 33.70646752720146 35.0 33.0 40.0 23.0 41.0 42 33.567831317158884 35.0 33.0 40.0 23.0 41.0 43 33.505422270280015 35.0 32.0 40.0 23.0 41.0 44 33.36042441035345 35.0 32.0 39.0 22.0 41.0 45 33.29597440922709 35.0 32.0 39.0 22.0 41.0 46 33.220963708859905 35.0 32.0 39.0 22.0 41.0 47 33.1405690342637 35.0 32.0 39.0 22.0 41.0 48 33.07097835146764 35.0 32.0 39.0 22.0 41.0 49 33.073330179540896 35.0 32.0 39.0 22.0 41.0 50 32.928990110608005 35.0 32.0 39.0 21.0 40.0 51 32.70683697145818 35.0 31.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 2.0 14 3.0 15 13.0 16 34.0 17 78.0 18 158.0 19 321.0 20 529.0 21 793.0 22 1267.0 23 1717.0 24 2295.0 25 3193.0 26 4073.0 27 4933.0 28 5255.0 29 5912.0 30 7099.0 31 8332.0 32 10177.0 33 13384.0 34 22411.0 35 29587.0 36 16672.0 37 20436.0 38 27760.0 39 35511.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.012998130251624 23.712013696470006 29.098691176139308 14.17629699713906 2 30.32461534995832 25.468676082989795 30.50438151877633 13.702327048275551 3 29.176634903471427 25.266833367123965 31.59739586853191 13.9591358608727 4 26.018787592079473 27.824559032236262 30.739564326102137 15.417089049582122 5 23.24615349958325 31.87808339528283 29.91462233335586 14.961140771778064 6 21.053366673424794 39.80897028676984 27.795724358541147 11.341938681264221 7 86.40940731229303 4.468923880966863 7.083868351692911 2.0378004550471944 8 88.07686242706855 3.3655470703520987 6.213421639521525 2.344168863057827 9 83.62415805005519 4.917212948570656 8.16516861525985 3.2934603861143024 10 50.991417179157935 22.765875965848934 13.640602824896938 12.60210403009619 11 43.54666486449956 21.193034624135525 20.557770719289948 14.70252979207497 12 39.10747674078079 21.005609245117256 24.715370232704828 15.171543781397128 13 22.501407943051518 36.70699015566218 25.17897772070915 15.612624180577145 14 17.223311031515397 38.181613390101596 28.1962559978374 16.398819580545606 15 15.810412020454597 22.323894483115946 45.29071208127773 16.574981415151722 16 17.69547881327296 17.551305444797368 43.45340271676692 21.29981302516276 17 17.517965353337388 18.855173345948504 29.04958212250231 34.5772791782118 18 23.306526097632403 21.95625239350319 31.98576287986303 22.751458629001377 19 28.506228740059925 24.442341916154177 24.638778130702168 22.412651213083734 20 31.366267937194475 22.183325448852244 24.082359036741682 22.3680475772116 21 24.454056002342817 26.208465679980176 26.62206303079453 22.715415286882475 22 24.90459777882904 24.241850825617806 24.634723254713794 26.218828140839364 23 22.093217093555 28.149850194859315 24.018832646257124 25.738100065328556 24 23.213714491676242 23.17181410646302 34.292536775472506 19.32193462638823 25 20.819535491428443 23.811583429073462 32.13534274965646 23.233538329841636 26 20.201392174089342 29.703318240183822 26.15935662634318 23.93593295938366 27 20.117591403662903 28.81079498096461 28.065148340879908 23.006465274492577 28 17.517064269784417 26.748214728210673 35.08549030208826 20.64923069991665 29 18.586650447162715 23.81879209749724 34.329481201144375 23.26507625419567 30 21.559325088418824 26.806785159153883 30.16377193575274 21.47011781667455 31 28.563898087450156 25.466423374107368 23.778693879389966 22.19098465905251 32 29.65105539411142 24.957311166677933 25.10508886936541 20.286544569845237 33 27.08612106057534 25.997612128584624 25.014529972291683 21.901736838548356 34 21.790903561532744 26.152598499695884 27.603793561758017 24.452704377013358 35 21.36424049920029 23.89268094884098 29.510486359847715 25.232592192111014 36 28.123268230046634 24.96587146043117 25.216823229933993 21.694037079588206 37 22.212160122547363 28.837376945777297 28.058390214232613 20.892072717442726 38 23.170462481133562 28.919826090874277 23.01727827712825 24.892433150863912 39 22.019778783987746 27.97188619314726 26.30352999481877 23.704805028046223 40 24.457660336554707 24.14092946768489 25.48354396161384 25.917866234146565 41 19.420603275438715 23.369601946340474 27.309589781712507 29.9002049965083 42 23.874659277781532 25.770539073235565 24.062985740352776 26.291815908630127 43 23.36194273614021 25.90209727196954 25.521840012615172 25.21411997927508 44 22.055371584330157 28.55128291770854 25.734045189340183 23.659300308621116 45 19.06062039602622 31.856907931787976 23.834110517897773 25.24836115428803 46 23.507918271721746 29.11896555608119 25.727737604469375 21.645378567727693 47 23.028091279763917 26.43734090243518 26.809488409812797 23.725079407988105 48 23.693090941857584 23.594422292807103 28.025050122772633 24.687436642562684 49 21.649433443716067 23.214165033452726 30.182244148588676 24.954157374242527 50 20.55416638507806 28.831519902682977 26.25892635894663 24.355387353292336 51 19.57288639589106 30.69631231555946 24.20175260751053 25.52904868103895 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 84.0 1 158.0 2 232.0 3 878.5 4 1525.0 5 1139.0 6 753.0 7 778.5 8 804.0 9 844.0 10 884.0 11 858.5 12 833.0 13 874.5 14 916.0 15 851.0 16 786.0 17 753.0 18 720.0 19 677.0 20 634.0 21 672.0 22 710.0 23 691.0 24 672.0 25 802.0 26 1087.5 27 1243.0 28 1670.5 29 2098.0 30 2230.5 31 2363.0 32 2815.0 33 3267.0 34 3989.0 35 4711.0 36 4905.0 37 5099.0 38 5872.0 39 6645.0 40 9493.5 41 12342.0 42 14841.5 43 17341.0 44 18033.0 45 18725.0 46 17617.5 47 16510.0 48 16722.0 49 16934.0 50 17624.0 51 18314.0 52 17362.5 53 16411.0 54 14905.0 55 13399.0 56 12360.0 57 11321.0 58 11158.5 59 10996.0 60 10244.5 61 9493.0 62 8733.0 63 7973.0 64 6771.0 65 5569.0 66 4627.5 67 3686.0 68 3251.0 69 2816.0 70 2226.0 71 1636.0 72 1398.5 73 1161.0 74 907.0 75 513.0 76 373.0 77 288.0 78 203.0 79 153.0 80 103.0 81 73.0 82 43.0 83 28.0 84 13.0 85 13.5 86 14.0 87 9.5 88 5.0 89 4.5 90 4.0 91 3.0 92 2.0 93 3.0 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 221955.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.88238606924827 #Duplication Level Percentage of deduplicated Percentage of total 1 70.73163615143336 21.84361694938163 2 5.975636443212489 3.690838232975153 3 3.2533372237216427 3.014124484692843 4 2.367787584798308 2.9249172129485705 5 1.8863520315121451 2.912752584983443 6 1.6310452987088775 3.022234236669595 7 1.4647311984827485 3.166407605145187 8 1.3596907141294041 3.3592394854812913 9 1.1627398059668832 3.23173616273569 >10 10.133488948865708 51.45547520893875 >50 0.026260121088336127 0.5667815548196706 >100 0.0043766868480560215 0.18066725237097608 >500 0.002917791232037348 0.6312090288572008 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 788 0.35502691987114504 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 613 0.2761821089860557 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04325201054267757 0.0 2 0.0 0.0 0.0 0.17435966750016896 0.0 3 0.0 0.0 0.0 0.25680881259714805 0.0 4 0.0 0.0 0.0 0.3978283886373364 0.0 5 0.0 0.0 0.0 0.681669707823658 0.0 6 0.0 0.0 0.0 0.9722691536572728 0.0 7 0.0 0.0 0.0 1.176815120182019 0.0 8 0.0 0.0 0.0 1.7170147101890023 0.0 9 0.0 0.0 0.0 1.9567029352796739 0.0 10 0.0 0.0 0.0 2.3833659976121284 0.0 11 0.0 0.0 0.0 2.6640535243630468 0.0 12 0.0 0.0 0.0 2.9384334662431573 0.0 13 0.0 0.0 0.0 3.04431078371742 0.0 14 0.0 0.0 0.0 3.0835079182717218 0.0 15 0.0 0.0 0.0 3.1411772656619585 0.0 16 0.0 0.0 0.0 3.2903065936788987 0.0 17 0.0 0.0 0.0 3.4615124687436643 0.0 18 0.0 0.0 0.0 3.697596359622446 0.0 19 0.0 0.0 0.0 3.804374760649681 0.0 20 0.0 0.0 0.0 3.9188123718771823 0.0 21 0.0 0.0 0.0 4.053524363046564 0.0 22 0.0 0.0 0.0 4.190939604874862 0.0 23 0.0 0.0 0.0 4.37025523191638 0.0 24 0.0 0.0 0.0 4.503615597756302 0.0 25 0.0 0.0 0.0 4.611295082336509 0.0 26 0.0 0.0 0.0 4.696898019868892 0.0 27 0.0 0.0 0.0 4.7892590840485685 0.0 28 0.0 0.0 0.0 4.897389110405262 0.0 29 0.0 0.0 0.0 5.009574012750332 0.0 30 0.0 0.0 0.0 5.132121375954585 0.0 31 0.0 0.0 0.0 5.264130116465049 0.0 32 0.0 0.0 0.0 5.372710684598229 0.0 33 0.0 0.0 0.0 5.493455880696538 0.0 34 0.0 0.0 0.0 5.61375053501836 0.0 35 0.0 0.0 0.0 5.77008853145908 0.0 36 0.0 0.0 0.0 5.903448897299002 0.0 37 0.0 0.0 0.0 6.045369556892163 0.0 38 0.0 0.0 0.0 6.19359780135613 0.0 39 0.0 0.0 0.0 6.329661417854971 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACAC 20 7.020977E-4 45.0 26 ACGCCGG 35 1.2060082E-7 45.0 27 AGTCACG 20 7.020977E-4 45.0 1 GATCGAG 20 7.020977E-4 45.0 1 CTCCGAC 25 3.880605E-5 45.0 23 GTTTACG 25 3.880605E-5 45.0 1 CGTTGCA 20 7.020977E-4 45.0 33 CCGGATA 20 7.020977E-4 45.0 20 TAAGTTA 20 7.020977E-4 45.0 42 GTGATAG 20 7.020977E-4 45.0 1 ATTCGCT 20 7.020977E-4 45.0 39 TAAGTCA 20 7.020977E-4 45.0 12 ACGGGTG 20 7.020977E-4 45.0 5 TCTAGAG 45 3.8198777E-10 45.0 1 GACCCAC 20 7.020977E-4 45.0 12 GTATGGA 20 7.020977E-4 45.0 27 CGGGATA 25 3.880605E-5 45.0 6 CGAGCGT 20 7.020977E-4 45.0 40 TAGGAGA 20 7.020977E-4 45.0 10 ACTCATG 20 7.020977E-4 45.0 22 >>END_MODULE