##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546327_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3186460 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.10638514213265 31.0 31.0 33.0 30.0 34.0 2 31.42621467082593 31.0 31.0 34.0 30.0 34.0 3 31.498391945921178 31.0 31.0 34.0 30.0 34.0 4 35.34841862129134 37.0 35.0 37.0 33.0 37.0 5 35.242731432373226 37.0 35.0 37.0 33.0 37.0 6 35.27175329362365 37.0 35.0 37.0 32.0 37.0 7 35.78774282432543 37.0 35.0 37.0 35.0 37.0 8 35.71105584253372 37.0 35.0 37.0 35.0 37.0 9 37.44884605486967 39.0 37.0 39.0 35.0 39.0 10 36.8922581799238 39.0 37.0 39.0 32.0 39.0 11 36.53491554891635 39.0 35.0 39.0 32.0 39.0 12 35.72309867376336 37.0 35.0 39.0 31.0 39.0 13 35.33039077848145 37.0 35.0 39.0 30.0 39.0 14 36.220412307074305 38.0 35.0 40.0 30.0 41.0 15 36.55173892030655 38.0 35.0 40.0 31.0 41.0 16 36.69666589255789 38.0 35.0 40.0 32.0 41.0 17 36.63083390345399 38.0 35.0 40.0 31.0 41.0 18 36.54976211846375 38.0 35.0 40.0 31.0 41.0 19 36.44023995280028 37.0 35.0 40.0 31.0 41.0 20 36.30160240517691 37.0 35.0 40.0 31.0 41.0 21 36.1325298293404 37.0 34.0 40.0 31.0 41.0 22 36.018684684571596 37.0 34.0 40.0 30.0 41.0 23 35.97680874701079 37.0 34.0 40.0 30.0 41.0 24 35.928185196111045 37.0 34.0 40.0 30.0 41.0 25 35.87941791204032 37.0 34.0 40.0 30.0 41.0 26 35.75198433371202 37.0 34.0 40.0 30.0 41.0 27 35.6441176101379 37.0 34.0 40.0 30.0 41.0 28 35.624429617820404 36.0 34.0 40.0 30.0 41.0 29 35.61184292286738 36.0 34.0 40.0 30.0 41.0 30 35.479716676186115 36.0 34.0 40.0 29.0 41.0 31 35.2917704913917 36.0 34.0 40.0 29.0 41.0 32 35.08882019545201 36.0 34.0 40.0 27.0 41.0 33 34.882385154685764 36.0 34.0 40.0 27.0 41.0 34 34.67991030799069 36.0 34.0 40.0 25.0 41.0 35 34.51897560302028 36.0 33.0 40.0 25.0 41.0 36 34.308888233337306 36.0 33.0 40.0 24.0 41.0 37 34.12998845113386 36.0 33.0 40.0 23.0 41.0 38 34.08417303214225 35.0 33.0 40.0 23.0 41.0 39 34.06908136301727 36.0 33.0 40.0 23.0 41.0 40 33.87440043182717 35.0 33.0 40.0 23.0 41.0 41 33.82639606334302 35.0 33.0 40.0 23.0 41.0 42 33.717087614468724 35.0 33.0 40.0 23.0 41.0 43 33.64930675420372 35.0 33.0 40.0 23.0 41.0 44 33.442490098730254 35.0 32.0 40.0 22.0 41.0 45 33.425876992022495 35.0 32.0 39.0 23.0 41.0 46 33.35068571392706 35.0 32.0 39.0 22.0 41.0 47 33.296453117252376 35.0 32.0 39.0 22.0 41.0 48 33.251289518776325 35.0 32.0 39.0 22.0 41.0 49 33.28083139283092 35.0 32.0 39.0 22.0 41.0 50 33.111168192916274 35.0 32.0 39.0 21.0 41.0 51 32.8978361567382 35.0 32.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 3.0 12 5.0 13 15.0 14 42.0 15 103.0 16 300.0 17 866.0 18 1965.0 19 3945.0 20 6912.0 21 10909.0 22 16454.0 23 23818.0 24 33942.0 25 47173.0 26 61131.0 27 69882.0 28 76008.0 29 85265.0 30 99763.0 31 121229.0 32 148638.0 33 190808.0 34 319836.0 35 439774.0 36 230437.0 37 276184.0 38 384101.0 39 536855.0 40 94.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.03570733666828 23.849569741970715 30.356885069952234 13.757837851408775 2 30.042460912737017 26.426316351060425 30.537430251752728 12.993792484449829 3 27.762313037037966 25.153273538660457 33.09735568624744 13.987057738054142 4 24.19085756607646 27.981521814176237 32.35195169561206 15.475668924135247 5 23.12274436208206 31.9072262008624 31.032776184229522 13.937253252826022 6 20.378445045599193 40.3121332136603 28.318447430691112 10.990974310049397 7 86.18055773491587 4.492446162826459 7.601005504541089 1.7259905977165881 8 87.52747563126478 3.2758296040119754 6.742968686253711 2.4537260784695243 9 82.59328533858891 5.2438442660507265 9.053400952781457 3.109469442578912 10 49.446533143362856 27.336354449765572 12.807598400733102 10.409514006138473 11 42.863271467396416 20.477520508652237 23.528429668032864 13.13077835591848 12 37.84971410279746 21.619038054769245 26.132636216993156 14.398611625440145 13 21.434005134224186 38.481418250974436 26.413480790595205 13.671095824206173 14 16.10489383202676 40.87793350614789 28.481857610012362 14.535315051812983 15 13.936029324077504 23.01183758779335 47.91640252819744 15.135730559931712 16 15.933669338388054 19.35153744280487 44.90268197309867 19.8121112457084 17 16.733522466938233 19.23903014630656 29.531046992587385 34.49640039416782 18 22.065238540574807 22.189514382731936 34.431971529534344 21.313275547158916 19 27.28563986367317 24.83963395115583 26.26952794009653 21.605198245074472 20 30.5173766499501 22.95500335795836 25.106167973236758 21.42145201885478 21 22.52766392799533 27.910345650031697 28.08913339568047 21.4728570262925 22 22.885961223426623 24.283154346830024 26.719525743301343 26.11135868644201 23 19.873778424960616 29.939462601131034 25.10108396151215 25.0856750123962 24 20.592820873320235 23.860898928591602 37.492546587749416 18.053733610338746 25 17.402666281704462 25.532942513008166 34.583770077138894 22.480621128148478 26 17.997244591176415 32.919352510309245 28.079436114057604 21.003966784456733 27 18.85192345110248 31.08418119166724 29.337289656860595 20.72660570036969 28 15.777351669250518 27.808508501597384 37.589268341670696 18.824871487481406 29 16.12406871575353 24.14632538930349 36.74830376028571 22.98130213465727 30 18.806920532503156 28.968824337980077 31.601589224405767 20.622665905111003 31 26.98172894057983 26.62678960350985 24.87500235370913 21.51647910220119 32 28.172046722695406 28.067761716764057 25.01917488372677 18.741016676813768 33 25.942864495396144 27.677297063198658 25.064177802326093 21.315660639079105 34 18.849695273124407 29.152853009295583 28.279909366507034 23.71754235107298 35 19.576897246474143 26.899506034910214 29.49737326060895 24.02622345800669 36 27.041889745987714 25.958650037973175 27.10452979168105 19.894930424358066 37 20.143764553768133 30.751806079473777 28.82929646064912 20.275132906108972 38 20.178913276802472 31.800022595607665 24.17573106205633 23.845333065533538 39 20.01045046854503 31.09789547020832 27.197297314260965 21.694356746985683 40 21.964185961851083 26.69614556592582 26.129592086516073 25.210076385707026 41 17.972106977649176 25.062232069443834 26.549211350526917 30.41644960238007 42 22.228429040377094 25.820063644294923 24.959170992261004 26.99233632306698 43 22.15235716123849 26.4765915781149 26.212505413531 25.15854584711561 44 20.11420196707318 30.22040132309836 27.44415432800035 22.22124238182811 45 17.75735455646705 34.189100129924746 23.974441857107887 24.079103456500317 46 22.04188974598771 31.073040301776896 26.42349190010231 20.46157805213309 47 21.24868976858332 28.18566685287121 26.522849808251163 24.042793570294307 48 21.9780885371227 24.617757637001564 28.94148992926319 24.46266389661254 49 20.97004199017091 22.956384200648998 31.875247139458835 24.198326669721258 50 18.87750042366764 30.104002560835536 27.558513209015643 23.459983806481173 51 18.120170973431332 31.810598595306388 24.814245275321202 25.254985155941075 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1744.0 1 2405.0 2 3066.0 3 13899.5 4 24733.0 5 18428.0 6 12123.0 7 12941.0 8 13759.0 9 14663.5 10 15568.0 11 15765.5 12 15963.0 13 15527.0 14 15091.0 15 14925.5 16 14760.0 17 13924.0 18 13088.0 19 13040.5 20 12993.0 21 12697.0 22 12401.0 23 13312.5 24 14224.0 25 14231.5 26 17917.5 27 21596.0 28 25473.0 29 29350.0 30 33355.5 31 37361.0 32 43591.0 33 49821.0 34 61038.0 35 72255.0 36 78806.0 37 85357.0 38 104770.0 39 124183.0 40 170170.0 41 216157.0 42 263561.0 43 310965.0 44 333445.0 45 355925.0 46 341159.0 47 326393.0 48 299680.5 49 272968.0 50 253342.5 51 233717.0 52 217294.0 53 200871.0 54 182860.5 55 164850.0 56 148522.0 57 132194.0 58 119285.0 59 106376.0 60 100073.5 61 93771.0 62 77318.5 63 60866.0 64 49610.5 65 38355.0 66 33223.0 67 28091.0 68 22306.5 69 16522.0 70 13310.0 71 10098.0 72 8752.0 73 7406.0 74 5389.5 75 2616.0 76 1859.0 77 1552.0 78 1245.0 79 891.5 80 538.0 81 333.0 82 128.0 83 94.0 84 60.0 85 43.5 86 27.0 87 19.5 88 12.0 89 7.0 90 2.0 91 8.0 92 14.0 93 8.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3186460.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.70667586386095 #Duplication Level Percentage of deduplicated Percentage of total 1 79.17963701575117 14.811878046718235 2 8.973519998849211 3.3572945995269214 3 3.197449667233096 1.7944096354781873 4 1.5380051823913194 1.1508385769573102 5 0.9005488245719723 0.8423137480424432 6 0.5716398589510349 0.6416088931356122 7 0.41690516210504913 0.5459236813428693 8 0.3065668041887812 0.4587876669263407 9 0.23859142672731748 0.40169272353156527 >10 2.3271437166361686 9.965196445687925 >50 0.8560316095129356 11.722667946436447 >100 1.4807188244940717 51.630223725407674 >500 0.011374459940865536 1.2932794247743877 >1k 0.0015279125293699977 0.4545516884020287 >5k 0.0 0.0 >10k+ 3.395361176377772E-4 0.9293331976321222 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 14727 0.46217432511313494 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14536 0.45618021252424323 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08875052566170609 0.0 2 0.0 0.0 0.0 0.386604570589306 0.0 3 3.1382788423517E-5 0.0 0.0 0.5355786672357412 0.0 4 3.1382788423517E-5 0.0 0.0 0.795428155382462 0.0 5 3.1382788423517E-5 0.0 0.0 1.3362477482849306 0.0 6 3.1382788423517E-5 0.0 0.0 1.8320958053764993 0.0 7 3.1382788423517E-5 0.0 0.0 2.150317279990962 0.0 8 3.1382788423517E-5 0.0 0.0 3.029223652579979 0.0 9 3.1382788423517E-5 0.0 0.0 3.3900001882967303 0.0 10 3.1382788423517E-5 0.0 0.0 4.022991030799068 0.0 11 3.1382788423517E-5 0.0 0.0 4.55009634516046 0.0 12 3.1382788423517E-5 0.0 0.0 5.0315710851540585 0.0 13 3.1382788423517E-5 0.0 0.0 5.21246147762721 0.0 14 3.1382788423517E-5 0.0 0.0 5.27742384966389 0.0 15 3.1382788423517E-5 0.0 0.0 5.389931146162199 0.0 16 3.1382788423517E-5 0.0 0.0 5.643943435662146 0.0 17 3.1382788423517E-5 0.0 0.0 5.956013883745599 0.0 18 3.1382788423517E-5 0.0 0.0 6.404850523778739 0.0 19 3.1382788423517E-5 0.0 0.0 6.5978860553717915 0.0 20 3.1382788423517E-5 0.0 0.0 6.803443319545829 0.0 21 3.1382788423517E-5 0.0 0.0 7.053626908858106 0.0 22 3.1382788423517E-5 0.0 0.0 7.317210948827225 0.0 23 3.1382788423517E-5 0.0 0.0 7.622659628553317 0.0 24 3.1382788423517E-5 0.0 0.0 7.847799752703628 0.0 25 3.1382788423517E-5 0.0 0.0 8.018773184034949 0.0 26 3.1382788423517E-5 0.0 0.0 8.200761974102923 0.0 27 3.1382788423517E-5 0.0 0.0 8.375313043314524 0.0 28 3.1382788423517E-5 0.0 0.0 8.55667417761403 0.0 29 3.1382788423517E-5 0.0 0.0 8.755295845546469 0.0 30 3.1382788423517E-5 0.0 0.0 9.020888383974693 0.0 31 3.1382788423517E-5 0.0 0.0 9.24948061485159 0.0 32 3.1382788423517E-5 0.0 0.0 9.457956478349015 0.0 33 3.1382788423517E-5 0.0 0.0 9.657739309453124 0.0 34 3.1382788423517E-5 0.0 0.0 9.881467208124377 0.0 35 3.1382788423517E-5 0.0 0.0 10.151139509047658 0.0 36 3.1382788423517E-5 0.0 0.0 10.38716946078093 0.0 37 3.1382788423517E-5 0.0 0.0 10.615008504735663 0.0 38 3.1382788423517E-5 0.0 0.0 10.834876320430823 0.0 39 3.1382788423517E-5 0.0 0.0 11.067265868706967 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTAA 20 7.0351706E-4 45.000004 1 GCGTAAT 20 7.0351706E-4 45.000004 2 TCCGCGA 25 3.892368E-5 45.0 29 GTCCGCG 25 3.892368E-5 45.0 28 CGAATCG 25 3.892368E-5 45.0 16 ACGTCCG 45 3.8562575E-10 45.0 30 ACTCGAT 30 2.1667183E-6 44.999996 14 TTACGTA 30 2.1667183E-6 44.999996 20 CGTAACG 30 2.1667183E-6 44.999996 22 AATCGAC 30 2.1667183E-6 44.999996 35 CGTTTTT 12035 0.0 43.653927 1 CGTTGAT 160 0.0 43.593754 25 CTCACGA 255 0.0 42.35294 24 ACGTTAG 155 0.0 42.09677 1 CTATGCG 135 0.0 41.666664 1 TTCGCGA 55 6.184564E-11 40.909092 15 CGGGTAT 255 0.0 40.588234 6 GCACGAC 50 1.0822987E-9 40.5 9 ATTCGGC 245 0.0 40.408165 17 GGCACCG 1230 0.0 40.2439 8 >>END_MODULE