##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546325_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3594680 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.135409827856723 31.0 31.0 33.0 30.0 34.0 2 31.461944874091714 31.0 31.0 34.0 30.0 34.0 3 31.52975591707746 31.0 31.0 34.0 30.0 34.0 4 35.38376962622542 37.0 35.0 37.0 33.0 37.0 5 35.28532442387083 37.0 35.0 37.0 33.0 37.0 6 35.32236304761481 37.0 35.0 37.0 33.0 37.0 7 35.783290584975575 37.0 35.0 37.0 35.0 37.0 8 35.70472642905627 37.0 35.0 37.0 35.0 37.0 9 37.45967680016024 39.0 37.0 39.0 35.0 39.0 10 36.93302018538507 39.0 37.0 39.0 32.0 39.0 11 36.61473594311594 39.0 35.0 39.0 32.0 39.0 12 35.8031151590684 37.0 35.0 39.0 31.0 39.0 13 35.40130359308756 37.0 35.0 39.0 30.0 39.0 14 36.28619877151791 38.0 35.0 40.0 30.0 41.0 15 36.62457576195934 38.0 35.0 40.0 31.0 41.0 16 36.74427153460113 38.0 35.0 40.0 32.0 41.0 17 36.6984118196891 38.0 35.0 40.0 32.0 41.0 18 36.601674140674554 38.0 35.0 40.0 31.0 41.0 19 36.49816117150901 37.0 35.0 40.0 31.0 41.0 20 36.3304789299743 37.0 35.0 40.0 31.0 41.0 21 36.17913778138805 37.0 35.0 40.0 31.0 41.0 22 36.06282923653844 37.0 35.0 40.0 30.0 41.0 23 36.025391968130684 37.0 34.0 40.0 30.0 41.0 24 35.9605619971736 37.0 34.0 40.0 30.0 41.0 25 35.88857033171242 37.0 34.0 40.0 30.0 41.0 26 35.773135856321005 37.0 34.0 40.0 30.0 41.0 27 35.64586806057841 37.0 34.0 40.0 30.0 41.0 28 35.63299653933034 36.0 34.0 40.0 30.0 41.0 29 35.60264446348493 36.0 34.0 40.0 30.0 41.0 30 35.47150455673384 36.0 34.0 40.0 29.0 41.0 31 35.2339791024514 36.0 34.0 40.0 29.0 41.0 32 35.02733817752902 36.0 34.0 40.0 27.0 41.0 33 34.81771145136702 36.0 34.0 40.0 26.0 41.0 34 34.62487175492672 36.0 34.0 40.0 25.0 41.0 35 34.427524842266905 36.0 33.0 40.0 24.0 41.0 36 34.18392958483091 36.0 33.0 40.0 23.0 41.0 37 33.99950621473956 36.0 33.0 40.0 23.0 41.0 38 33.96267873635484 35.0 33.0 40.0 23.0 41.0 39 33.923792938453495 35.0 33.0 40.0 23.0 41.0 40 33.72190959974184 35.0 33.0 40.0 23.0 41.0 41 33.64911035196457 35.0 33.0 40.0 22.0 41.0 42 33.53686670301668 35.0 33.0 40.0 22.0 41.0 43 33.49263606218078 35.0 32.0 40.0 22.0 41.0 44 33.31644318826711 35.0 32.0 40.0 21.0 41.0 45 33.27049445291375 35.0 32.0 39.0 22.0 41.0 46 33.18959684867638 35.0 32.0 39.0 21.0 41.0 47 33.12413483258593 35.0 32.0 39.0 20.0 41.0 48 33.07278784203323 35.0 32.0 39.0 20.0 41.0 49 33.09533866714144 35.0 32.0 39.0 20.0 41.0 50 32.92410590094251 35.0 32.0 39.0 20.0 41.0 51 32.70159151857745 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 3.0 12 14.0 13 16.0 14 44.0 15 156.0 16 439.0 17 1103.0 18 2482.0 19 4962.0 20 8501.0 21 13532.0 22 19943.0 23 28341.0 24 40178.0 25 55475.0 26 72074.0 27 82474.0 28 87337.0 29 96273.0 30 111186.0 31 132976.0 32 164297.0 33 211316.0 34 358468.0 35 492034.0 36 252733.0 37 308988.0 38 438008.0 39 611234.0 40 88.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.89666952273916 22.885069046479796 29.74796087551604 14.470300555265004 2 30.96948824373797 26.04816005875349 30.642699767434095 12.339651930074444 3 27.814742897837917 24.86187922151624 33.89603525209476 13.42734262855108 4 25.20597104610146 27.584819789244104 31.815293711818576 15.393915452835857 5 22.569046479797926 32.29458533165678 31.388551971246397 13.747816217298897 6 20.68451155596604 39.77772708558203 28.657293556032805 10.88046780241913 7 85.5069992321987 4.737528792548988 7.914139784347982 1.8413321909043365 8 87.43201063794274 3.3855308400191393 7.052644463484928 2.1298140585531953 9 82.93653398911725 5.001557857723079 9.151273548688618 2.910634604471052 10 49.78078716325236 24.98631310714723 14.102479219290728 11.13042051030968 11 43.66430391578666 20.007538918624192 21.92222951695283 14.405927648636318 12 38.64713966194488 21.649576596525975 25.59654823238786 14.106735509141286 13 21.883505624979136 39.00580858379605 25.40757452680072 13.703111264424091 14 16.232738380050517 40.5668376600977 28.083779362836193 15.116644597015592 15 14.16626792927326 22.70508084168827 48.19836536214628 14.930285866892184 16 15.91980370992689 18.34077024936851 44.75079840208308 20.98862763862152 17 16.808394627616366 18.694097944740562 29.392602401326407 35.10490502631667 18 21.365378837615587 21.376116928349674 35.83929584830916 21.41920838572557 19 27.516802608298928 24.399529304416525 26.84347424527357 21.24019384201097 20 30.79125262888491 22.130954632957593 25.990157677456686 21.087635060700812 21 22.775128801451032 26.624845605172087 27.973672204479954 22.626353388896923 22 22.858390732972058 23.80069992321987 26.010882748951232 27.330026594856843 23 20.116366408136468 28.243626692779326 25.372049806936918 26.26795709214728 24 20.84766933357072 23.25578354679693 37.86495599051932 18.03159112911302 25 18.03793383555699 25.351324735442375 34.53158556533544 22.079155863665196 26 19.054825464297238 32.35108549300633 26.78213359742731 21.81195544526912 27 18.40636718706533 31.073447427865624 29.67621596359064 20.843969421478405 28 16.016084880990796 27.004044866302422 38.040854818787764 18.939015433919014 29 16.497490736310326 23.57322487676233 36.89257458243849 23.036709804488854 30 19.69941691610936 28.008918735464633 32.565819488800116 19.72584485962589 31 27.8236449419698 26.661510899440284 25.50346623343385 20.011377925156065 32 28.541956446749083 26.34579434052544 25.917661655557655 19.194587557167814 33 26.48027084469271 27.73315009959162 25.45408770738981 20.33249134832586 34 19.931287346857022 27.64229361167058 28.301907262955257 24.124511778517142 35 20.219991765609176 26.289099446960506 29.848387060878856 23.64252172655146 36 28.651952329553676 25.493924354879987 26.445107770371774 19.409015545194567 37 21.39444957548377 30.71469504935071 28.474440005786327 19.416415369379195 38 21.044181957782055 30.931932745056585 25.320390132084082 22.703495165077282 39 20.971268652564344 30.625702426919784 26.872934447572522 21.53009447294335 40 23.49252228292922 25.554569530528447 26.771562420020693 24.181345766521638 41 17.839334794752247 24.92283040493173 27.61797990363537 29.619854896680653 42 22.015255878131015 26.45567894777838 25.399813057073228 26.12925211701737 43 21.9148296927682 27.148035430135646 26.929907530016578 24.007227347079574 44 20.848865545750943 29.23550914128657 28.24743788042329 21.668187432539195 45 18.56326571488978 34.62230295881692 23.224598573447427 23.589832752845872 46 22.163780920693917 30.67905905393526 26.635194231475403 20.521965793895422 47 21.57162807259617 28.20965983063861 27.220197625379726 22.99851447138549 48 22.620511422435378 24.760813201731445 28.620600442876697 23.99807493295648 49 20.67622152736822 23.330755449720144 31.682847986468893 24.310175036442743 50 19.82009525187221 31.008796332357818 26.99745178986725 22.173656625902723 51 19.101895022644573 31.102073063527214 25.704123871944095 24.091908041884118 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1626.0 1 2451.0 2 3276.0 3 16536.0 4 29796.0 5 22479.5 6 15163.0 7 15984.5 8 16806.0 9 17835.0 10 18864.0 11 18841.5 12 18819.0 13 18280.0 14 17741.0 15 16656.5 16 15572.0 17 15008.0 18 14444.0 19 13834.0 20 13224.0 21 13538.5 22 13853.0 23 15407.5 24 16962.0 25 17921.5 26 23715.0 27 28549.0 28 30412.0 29 32275.0 30 37095.0 31 41915.0 32 54749.5 33 67584.0 34 84513.0 35 101442.0 36 106200.0 37 110958.0 38 126580.5 39 142203.0 40 188782.0 41 235361.0 42 280403.0 43 325445.0 44 329229.0 45 333013.0 46 328998.0 47 324983.0 48 315630.0 49 306277.0 50 292831.5 51 279386.0 52 255030.0 53 230674.0 54 201473.0 55 172272.0 56 158571.5 57 144871.0 58 137522.5 59 130174.0 60 117857.5 61 105541.0 62 95546.5 63 85552.0 64 76628.5 65 67705.0 66 54677.0 67 41649.0 68 34830.5 69 28012.0 70 22956.0 71 17900.0 72 15243.5 73 12587.0 74 9282.5 75 4764.5 76 3551.0 77 2760.0 78 1969.0 79 1448.5 80 928.0 81 672.5 82 417.0 83 334.0 84 251.0 85 177.0 86 103.0 87 90.0 88 77.0 89 49.5 90 22.0 91 19.5 92 17.0 93 9.5 94 2.0 95 6.0 96 10.0 97 5.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3594680.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.19775043092686 #Duplication Level Percentage of deduplicated Percentage of total 1 80.90276036423663 13.913454819172227 2 8.415864211725477 2.894678647476475 3 2.8992803273274266 1.4958329849601903 4 1.3203879551579847 0.9083081009923548 5 0.7678624347130041 0.6602753258739057 6 0.5015942937708473 0.5175776089108826 7 0.3433971254505163 0.4133960643536963 8 0.250334292727911 0.3444149352509762 9 0.20254409408964785 0.3134972503270739 >10 1.9488415977456226 7.5987001960068055 >50 0.7402774171268783 9.348675635167046 >100 1.6843199264095672 58.001664587533384 >500 0.019759790592242022 2.105082971928416 >1k 0.0022862567627387467 0.5347874051292228 >5k 1.6330405448133906E-4 0.15777941613359803 >10k+ 3.266081089626781E-4 0.7918740507837184 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16914 0.4705286701458823 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 11282 0.31385269342472766 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 5618 0.15628651229038468 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0507694704396497 0.0 2 0.0 0.0 0.0 0.20519211723992123 0.0 3 0.0 0.0 0.0 0.28795330877852826 0.0 4 0.0 0.0 0.0 0.4393158779084647 0.0 5 0.0 0.0 0.0 0.7445447160804299 0.0 6 0.0 0.0 0.0 1.0591485194787853 0.0 7 0.0 0.0 0.0 1.2545762070615465 0.0 8 0.0 0.0 0.0 1.7888935871899585 0.0 9 0.0 0.0 0.0 2.0182046802497022 0.0 10 0.0 0.0 0.0 2.406027796632802 0.0 11 0.0 0.0 0.0 2.754153359965282 0.0 12 0.0 0.0 0.0 3.057156687104276 0.0 13 2.7818887912136825E-5 0.0 0.0 3.1790034161594356 0.0 14 2.7818887912136825E-5 0.0 0.0 3.223151991275997 0.0 15 2.7818887912136825E-5 0.0 0.0 3.3029643806959172 0.0 16 2.7818887912136825E-5 0.0 0.0 3.476999343474245 0.0 17 2.7818887912136825E-5 0.0 0.0 3.692094984810887 0.0 18 2.7818887912136825E-5 0.0 0.0 3.991342762081743 0.0 19 2.7818887912136825E-5 0.0 0.0 4.11471952997207 0.0 20 2.7818887912136825E-5 0.0 0.0 4.251059899629452 0.0 21 2.7818887912136825E-5 0.0 0.0 4.422006965849533 0.0 22 2.7818887912136825E-5 0.0 0.0 4.606557468258649 0.0 23 2.7818887912136825E-5 0.0 0.0 4.831695728131572 0.0 24 2.7818887912136825E-5 0.0 0.0 4.9923219869362505 0.0 25 2.7818887912136825E-5 0.0 0.0 5.116894967006799 0.0 26 2.7818887912136825E-5 0.0 0.0 5.239854451578443 0.0 27 2.7818887912136825E-5 0.0 0.0 5.3620628261764605 0.0 28 2.7818887912136825E-5 0.0 0.0 5.489501151701959 0.0 29 2.7818887912136825E-5 0.0 0.0 5.635522494352766 0.0 30 2.7818887912136825E-5 0.0 0.0 5.830783268608054 0.0 31 2.7818887912136825E-5 0.0 0.0 5.996027462806147 0.0 32 2.7818887912136825E-5 0.0 0.0 6.1477238585910285 0.0 33 0.003922463195611292 0.0 0.0 6.295469972292388 0.0 34 0.003922463195611292 0.0 0.0 6.457904458811354 0.0 35 0.003922463195611292 0.0 0.0 6.666657393704029 0.0 36 0.003922463195611292 0.0 0.0 6.835156397787842 0.0 37 0.003922463195611292 0.0 0.0 7.008356793928806 0.0 38 0.003922463195611292 0.0 0.0 7.173044610368656 0.0 39 0.003950282083523429 0.0 0.0 7.353839562909633 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATTA 20 7.035291E-4 45.000004 28 CCGTACC 25 3.8924678E-5 45.000004 33 TGGTCGA 25 3.8924678E-5 45.000004 10 CGCGATA 30 2.1667965E-6 44.999996 23 ACGGGTA 145 0.0 43.448273 5 CGTTTTT 15430 0.0 43.118927 1 TGATGCG 105 0.0 42.857147 1 TCGATAG 205 0.0 41.707317 1 CGGTCTA 315 0.0 41.428574 31 TAATGCG 180 0.0 41.250004 1 TACGGGA 875 0.0 40.885715 4 GCTACGA 775 0.0 40.64516 10 GTATCGA 95 0.0 40.26316 22 TAAACGG 235 0.0 40.212765 2 GCGATAT 420 0.0 40.178574 9 CGTAGGT 45 1.9303116E-8 40.000004 21 CGTAGAC 45 1.9303116E-8 40.000004 34 GCGTAAG 85 0.0 39.705883 1 GCGTACA 40 3.4609548E-7 39.375004 9 ACCGCTC 120 0.0 39.374996 18 >>END_MODULE