##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546323_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1560853 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.15021978366957 31.0 31.0 33.0 30.0 34.0 2 31.483242175912785 31.0 31.0 34.0 30.0 34.0 3 31.5544564414458 31.0 31.0 34.0 30.0 34.0 4 35.39446315572319 37.0 35.0 37.0 33.0 37.0 5 35.300326167806965 37.0 35.0 37.0 33.0 37.0 6 35.329612718173976 37.0 35.0 37.0 33.0 37.0 7 35.77460785865165 37.0 35.0 37.0 35.0 37.0 8 35.6922580153288 37.0 35.0 37.0 35.0 37.0 9 37.412575047105655 39.0 37.0 39.0 35.0 39.0 10 36.953350507703156 39.0 37.0 39.0 32.0 39.0 11 36.624479691553276 39.0 35.0 39.0 32.0 39.0 12 35.649656950398274 37.0 35.0 39.0 31.0 39.0 13 35.179085410349344 37.0 35.0 39.0 30.0 39.0 14 36.04923269519936 38.0 35.0 40.0 30.0 41.0 15 36.417653680391425 38.0 35.0 40.0 31.0 41.0 16 36.58897474650079 38.0 35.0 40.0 32.0 41.0 17 36.57107235594896 38.0 35.0 40.0 32.0 41.0 18 36.46659166494218 38.0 35.0 40.0 31.0 41.0 19 36.34508887127743 37.0 35.0 40.0 31.0 41.0 20 36.16404876051749 37.0 35.0 40.0 31.0 41.0 21 35.994075034612486 36.0 34.0 40.0 31.0 41.0 22 35.88046920497958 36.0 34.0 40.0 30.0 41.0 23 35.86690610839073 36.0 34.0 40.0 30.0 41.0 24 35.81297021564491 36.0 34.0 40.0 30.0 41.0 25 35.74034133899861 36.0 34.0 40.0 30.0 41.0 26 35.62221938901357 36.0 34.0 40.0 30.0 41.0 27 35.514209217652144 36.0 34.0 40.0 30.0 41.0 28 35.51432902393755 36.0 34.0 40.0 30.0 41.0 29 35.5006409956607 36.0 34.0 40.0 30.0 41.0 30 35.392386727001195 36.0 34.0 40.0 29.0 41.0 31 35.15577892344763 36.0 34.0 40.0 29.0 41.0 32 34.95185709352514 35.0 34.0 40.0 27.0 41.0 33 34.740626439517364 35.0 34.0 40.0 27.0 41.0 34 34.53499272513171 35.0 34.0 40.0 25.0 41.0 35 34.32648942597413 35.0 33.0 40.0 24.0 41.0 36 34.07475527804348 35.0 33.0 40.0 23.0 41.0 37 33.88515894834427 35.0 33.0 40.0 23.0 41.0 38 33.874898533045716 35.0 33.0 40.0 23.0 41.0 39 33.862382299934715 35.0 33.0 40.0 23.0 41.0 40 33.63718492388457 35.0 33.0 40.0 23.0 41.0 41 33.58783626645174 35.0 33.0 40.0 22.0 41.0 42 33.4742432503253 35.0 33.0 40.0 22.0 41.0 43 33.40550135086392 35.0 32.0 40.0 22.0 41.0 44 33.27479781888493 35.0 32.0 39.0 22.0 41.0 45 33.232347953330645 35.0 32.0 39.0 22.0 41.0 46 33.169595727464404 35.0 32.0 39.0 22.0 41.0 47 33.13608328266659 35.0 32.0 39.0 21.0 41.0 48 33.08416807988965 35.0 32.0 39.0 21.0 41.0 49 33.12742968107823 35.0 32.0 39.0 21.0 41.0 50 32.94490448491946 35.0 32.0 39.0 20.0 41.0 51 32.737978528407226 35.0 32.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 3.0 11 5.0 12 8.0 13 10.0 14 34.0 15 66.0 16 160.0 17 475.0 18 1062.0 19 2236.0 20 3873.0 21 5969.0 22 8793.0 23 12662.0 24 17966.0 25 24632.0 26 31205.0 27 35324.0 28 37770.0 29 41665.0 30 48659.0 31 58107.0 32 72376.0 33 94631.0 34 166975.0 35 229800.0 36 103481.0 37 123667.0 38 177738.0 39 261459.0 40 39.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.48361440827547 24.0123189051115 27.88994223030612 14.614124456306904 2 31.47881318740458 25.768666235705734 29.393158740765468 13.359361836124222 3 28.551439501349584 25.271374049958578 32.643624992231814 13.533561456460024 4 25.784042443458798 27.5442338259913 31.732905020524033 14.938818710025863 5 23.102816216517507 32.087006271570736 30.643949173945273 14.166228337966484 6 21.254275706937168 39.71962766512926 28.407415688729177 10.618680939204395 7 84.5368526055945 5.341117965625206 7.878768852672224 2.243260576108064 8 85.97670632660474 4.253956009950969 7.497502967928433 2.2718346955158495 9 81.22923811531258 6.05431773523836 9.528828147173373 3.187616002275679 10 52.679400302270615 22.51563728294721 13.98325146570497 10.821710949077204 11 47.70615810713757 19.39535625712351 20.46304168297719 12.435443952761727 12 42.69902418741547 21.236849338150357 23.90852950277829 12.155596971655882 13 21.588003482711056 42.75867105999092 22.795740534182272 12.857584923115759 14 14.430955381448477 44.57421679043446 26.71821113199001 14.276616696127054 15 13.22866407022314 22.19049455650212 51.286251812310326 13.29458956096442 16 13.746457866307718 17.649451934294902 48.761030026530364 19.843060172867016 17 15.400425280279437 18.018929393094673 29.298915400745617 37.28172992588027 18 21.51349294264098 22.72936657071486 34.98766379665478 20.769476689989382 19 29.315124486418643 24.337653834153507 25.167904985286892 21.179316694140958 20 31.49547074580374 22.611610446339277 25.3278175459188 20.565101261938185 21 21.587170604791098 27.79768498378771 28.369039236878805 22.246105174542382 22 21.8779090663887 25.24081383704936 25.816780952466377 27.064496144095568 23 19.30726340020489 30.706415017942113 25.15726977492435 24.829051806928646 24 20.4472810700303 22.93502334941215 38.998996061768786 17.618699518788763 25 16.97251438796607 25.90333618860969 35.48489191486963 21.639257508554618 26 16.61258299147966 34.36665720602773 27.12190065304036 21.898859149452253 27 17.504467108689926 33.05308059118956 29.788903887810065 19.65354841231045 28 14.054750831756738 28.2796650293141 39.57611639276728 18.089467746161876 29 15.011215021529894 24.16902808912819 38.65963034315211 22.160126546189808 30 18.608863230554064 29.42269387315782 32.815774451533876 19.152668444754248 31 27.305325998028003 27.513032937759036 24.956802466343724 20.22483859786924 32 29.22081707886649 27.233826631976232 25.399124709373655 18.146231579783617 33 26.883825702997015 28.78522192672853 25.70184379951219 18.629108570762266 34 19.190276086216958 27.16078964514916 29.28155309949111 24.36738116914277 35 19.933010988222467 26.651196493199553 30.63023872203212 22.785553796545862 36 28.9977979989147 25.345884590028657 26.34809299786719 19.308224413189453 37 20.280257013312593 31.637252194793486 29.260731151492163 18.821759640401755 38 20.274683138002107 31.683060480391173 24.98537658575151 23.056879795855213 39 20.04692306065978 31.688442153104745 27.487469992369558 20.777164793865918 40 23.293096787461728 26.004306619521504 26.123344094543178 24.579252498473593 41 16.89326285050546 24.407167106703834 27.493620475470788 31.20594956731992 42 22.436898285745038 27.210890455411242 23.69383920202607 26.658372056817655 43 22.431772883160683 28.116420957002358 25.832285295284052 23.61952086455291 44 20.56702328790732 31.35605979550925 27.50816380530389 20.568753111279538 45 17.25063154569969 36.73420879480643 22.50589901803693 23.509260641456947 46 21.788727061420904 32.82089985411823 26.298760997992765 19.091612086468103 47 21.96670666616267 28.02358710269321 27.42590109382498 22.583805137319146 48 23.701783576031822 22.570927563325952 30.092327720803947 23.634961139838282 49 20.439977371347588 23.01363421154971 32.09469437544727 24.45169404165543 50 18.518335807407873 32.813339885306306 26.681372300914948 21.986952006370874 51 17.83274914421794 33.53749520294352 24.353350379568095 24.27640527327045 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 749.0 1 1160.0 2 1571.0 3 6869.0 4 12167.0 5 9285.0 6 6403.0 7 6757.5 8 7112.0 9 7690.5 10 8269.0 11 8236.0 12 8203.0 13 8032.0 14 7861.0 15 7430.0 16 6999.0 17 7108.5 18 7218.0 19 7055.5 20 6893.0 21 6464.0 22 6035.0 23 6492.0 24 6949.0 25 7322.5 26 8871.0 27 10046.0 28 13176.5 29 16307.0 30 19679.0 31 23051.0 32 26022.5 33 28994.0 34 36052.5 35 43111.0 36 46155.5 37 49200.0 38 56950.0 39 64700.0 40 88220.0 41 111740.0 42 137212.5 43 162685.0 44 157658.5 45 152632.0 46 147993.5 47 143355.0 48 135736.0 49 128117.0 50 122808.5 51 117500.0 52 108493.5 53 99487.0 54 86258.5 55 73030.0 56 64870.0 57 56710.0 58 52873.5 59 49037.0 60 46429.0 61 43821.0 62 38512.5 63 33204.0 64 27558.0 65 21912.0 66 18252.0 67 14592.0 68 11368.0 69 8144.0 70 7109.0 71 6074.0 72 5011.0 73 3948.0 74 2990.0 75 1853.5 76 1675.0 77 1227.5 78 780.0 79 559.0 80 338.0 81 324.5 82 311.0 83 207.5 84 104.0 85 73.5 86 43.0 87 36.0 88 29.0 89 16.5 90 4.0 91 6.0 92 8.0 93 6.5 94 5.0 95 3.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1560853.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.087278187215794 #Duplication Level Percentage of deduplicated Percentage of total 1 82.84016682378663 15.811933092409802 2 6.506850073399992 2.4839611494698235 3 1.9859728406622261 1.1372044824592529 4 0.9539088069775024 0.728300910560589 5 0.5577430273284306 0.5322898159798829 6 0.4231344185434314 0.4845890614394567 7 0.323431539664053 0.43213994404611095 8 0.24174903871453016 0.3691464922748991 9 0.21147061245695217 0.3632758567548074 >10 2.836889164106394 13.555599970155555 >50 1.6226062786964293 23.024325991466263 >100 1.4920284517780211 39.611175926442 >500 0.0030366929140665144 0.3395297012865499 >1k 3.3741032378516823E-4 0.21085361191429522 >5k 6.748206475703365E-4 0.9156739933406994 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7562 0.48447867928626204 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6656 0.42643349501842903 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 3274 0.20975710076477413 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05561061804026388 0.0 2 0.0 0.0 0.0 0.2149465708814347 0.0 3 0.0 0.0 0.0 0.3021424823477932 0.0 4 0.0 0.0 0.0 0.44898526638959596 0.0 5 0.0 0.0 0.0 0.7488213175744288 0.0 6 0.0 0.0 0.0 1.04301942591647 0.0 7 0.0 0.0 0.0 1.2270854462271592 0.0 8 0.0 0.0 0.0 1.7085529514951119 0.0 9 0.0 0.0 0.0 1.9355442184497835 0.0 10 0.0 0.0 0.0 2.3223839785040616 0.0 11 0.0 0.0 0.0 2.6191447881382808 0.0 12 0.0 0.0 0.0 2.9099473172681862 0.0 13 0.0 0.0 0.0 3.018477716991927 0.0 14 6.406753230445148E-5 0.0 0.0 3.0569182363745977 0.0 15 6.406753230445148E-5 0.0 0.0 3.1248298206173164 0.0 16 6.406753230445148E-5 0.0 0.0 3.2757088591942995 0.0 17 6.406753230445148E-5 0.0 0.0 3.445744089930314 0.0 18 6.406753230445148E-5 0.0 0.0 3.707459959393998 0.0 19 6.406753230445148E-5 0.0 0.0 3.808366322773509 0.0 20 6.406753230445148E-5 0.0 0.0 3.9231112731307816 0.0 21 6.406753230445148E-5 0.0 0.0 4.059254779277741 0.0 22 6.406753230445148E-5 0.0 0.0 4.191874571147956 0.0 23 6.406753230445148E-5 0.0 0.0 4.355631183718134 0.0 24 6.406753230445148E-5 0.0 0.0 4.474796793804414 0.0 25 6.406753230445148E-5 0.0 0.0 4.56455540656295 0.0 26 6.406753230445148E-5 0.0 0.0 4.660848907616541 0.0 27 6.406753230445148E-5 0.0 0.0 4.757975286590089 0.0 28 6.406753230445148E-5 0.0 0.0 4.8531796395945035 0.0 29 6.406753230445148E-5 0.0 0.0 4.955367353620104 0.0 30 6.406753230445148E-5 0.0 0.0 5.105733851938652 0.0 31 6.406753230445148E-5 0.0 0.0 5.243991586651658 0.0 32 1.2813506460890295E-4 0.0 0.0 5.351625040923136 0.0 33 1.2813506460890295E-4 0.0 0.0 5.471110988670938 0.0 34 1.2813506460890295E-4 0.0 0.0 5.593223705243223 0.0 35 1.2813506460890295E-4 0.0 0.0 5.75883827625023 0.0 36 1.2813506460890295E-4 0.0 0.0 5.882168275936299 0.0 37 1.2813506460890295E-4 0.0 0.0 6.007804706785328 0.0 38 1.2813506460890295E-4 0.0 0.0 6.117808659752072 0.0 39 1.2813506460890295E-4 0.0 0.0 6.233706825690824 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGCGA 20 7.0340623E-4 45.000004 42 CAACGTA 20 7.0340623E-4 45.000004 44 CTATCGT 20 7.0340623E-4 45.000004 13 CGACATA 20 7.0340623E-4 45.000004 41 ATCGTTA 20 7.0340623E-4 45.000004 15 ACGATAC 20 7.0340623E-4 45.000004 34 TATCGTT 20 7.0340623E-4 45.000004 14 TTCGTGA 35 1.2123019E-7 45.0 15 TACGCAA 25 3.8914495E-5 45.0 17 TGCGATG 55 1.8189894E-12 45.0 1 ACCGTTA 25 3.8914495E-5 45.0 21 TTACCCG 35 1.2123019E-7 45.0 1 TCGATAG 115 0.0 44.999996 1 CACTCGA 60 0.0 44.999996 44 TGTTACG 60 0.0 44.999996 1 AACTACG 30 2.1660035E-6 44.999996 1 GCGCTAT 30 2.1660035E-6 44.999996 38 CGTTTTT 6365 0.0 42.45483 1 CGAGGGT 230 0.0 42.065216 4 AGCTACG 335 0.0 41.64179 9 >>END_MODULE