##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546322_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1377266 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.117416679130972 31.0 31.0 33.0 30.0 34.0 2 31.450217314592823 31.0 31.0 34.0 30.0 34.0 3 31.55019146628175 31.0 31.0 34.0 30.0 34.0 4 35.40158328166091 37.0 35.0 37.0 33.0 37.0 5 35.310828118896424 37.0 35.0 37.0 33.0 37.0 6 35.341190445418675 37.0 35.0 37.0 33.0 37.0 7 35.76016470311472 37.0 35.0 37.0 35.0 37.0 8 35.65836446989906 37.0 35.0 37.0 35.0 37.0 9 37.37066913726179 39.0 37.0 39.0 35.0 39.0 10 36.86417075568554 39.0 37.0 39.0 32.0 39.0 11 36.60974132810946 39.0 35.0 39.0 32.0 39.0 12 35.99693232825032 37.0 35.0 39.0 32.0 39.0 13 35.74566568840006 37.0 35.0 39.0 31.0 39.0 14 36.66371565115236 38.0 35.0 41.0 31.0 41.0 15 36.90783987987796 38.0 35.0 41.0 31.0 41.0 16 36.96413546838446 38.0 35.0 41.0 32.0 41.0 17 36.89999607918877 38.0 35.0 41.0 32.0 41.0 18 36.82788364774851 38.0 35.0 40.0 31.0 41.0 19 36.75369318635616 38.0 35.0 40.0 31.0 41.0 20 36.60624817573366 38.0 35.0 40.0 31.0 41.0 21 36.473646339922716 38.0 35.0 40.0 31.0 41.0 22 36.35679672626784 38.0 35.0 40.0 30.0 41.0 23 36.28040189767263 38.0 35.0 40.0 30.0 41.0 24 36.289962868465494 38.0 35.0 40.0 30.0 41.0 25 36.225636151622126 38.0 35.0 40.0 30.0 41.0 26 36.108785811891096 38.0 35.0 40.0 30.0 41.0 27 35.977987549246116 38.0 34.0 40.0 30.0 41.0 28 35.96124641136861 38.0 35.0 40.0 30.0 41.0 29 35.88345751655817 38.0 35.0 40.0 30.0 41.0 30 35.73704062976941 37.0 34.0 40.0 29.0 41.0 31 35.54777798914662 37.0 34.0 40.0 29.0 41.0 32 35.40961005354085 37.0 34.0 40.0 28.0 41.0 33 35.23439408218891 37.0 34.0 40.0 27.0 41.0 34 35.03582024097015 37.0 34.0 40.0 26.0 41.0 35 34.87275297582312 37.0 34.0 40.0 25.0 41.0 36 34.650581659606786 37.0 33.0 40.0 24.0 41.0 37 34.49619173057347 37.0 33.0 40.0 24.0 41.0 38 34.402293384139305 37.0 33.0 40.0 24.0 41.0 39 34.349997749163926 36.0 33.0 40.0 23.0 41.0 40 34.16311300794472 36.0 33.0 40.0 23.0 41.0 41 34.04948644633644 36.0 33.0 40.0 23.0 41.0 42 33.92597290574225 36.0 33.0 40.0 23.0 41.0 43 33.893335782630224 36.0 33.0 40.0 23.0 41.0 44 33.72020292376346 35.0 33.0 40.0 23.0 41.0 45 33.6968189151551 35.0 33.0 40.0 23.0 41.0 46 33.58254832399842 35.0 32.0 40.0 23.0 41.0 47 33.498536956550154 35.0 32.0 40.0 22.0 41.0 48 33.419580531284446 35.0 32.0 39.0 22.0 41.0 49 33.41213389425136 35.0 32.0 39.0 22.0 41.0 50 33.258857766037934 35.0 32.0 39.0 22.0 41.0 51 33.05775717980405 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 0.0 11 4.0 12 13.0 13 13.0 14 29.0 15 69.0 16 190.0 17 431.0 18 954.0 19 1704.0 20 2920.0 21 4674.0 22 7186.0 23 9905.0 24 13662.0 25 18798.0 26 24296.0 27 28008.0 28 31219.0 29 35219.0 30 41140.0 31 49600.0 32 60923.0 33 77718.0 34 124154.0 35 163402.0 36 107854.0 37 134478.0 38 189499.0 39 249167.0 40 35.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.66178646681178 23.021188354319357 28.6347009219715 13.68232425689736 2 31.808016752029022 24.94057066681382 29.869466029074992 13.38194655208217 3 29.66522080701912 25.645009751202746 30.928738529811962 13.761030911966172 4 26.36041258551362 27.69247189722247 30.247969528035977 15.699145989227933 5 22.787827478497256 31.983218927934036 29.723452114551584 15.505501479017125 6 21.07494122413535 40.60907624235261 27.45998231278489 10.85600022072715 7 86.33009164533213 4.447506872310796 7.136747730648982 2.085653751708094 8 87.09319768294577 3.890969500445084 6.688613528541327 2.3272192880678095 9 81.71892720796127 5.408831699904012 8.879112676854 3.9931284152807085 10 45.700394840212425 24.63402131469157 15.855615400365652 13.809968444730359 11 39.18015837173066 23.58665646287645 22.16129636540799 15.071888799984897 12 34.56848568105217 22.761470914115357 26.440716608120724 16.229326796711746 13 23.880644697538457 33.52613075469807 25.910317977790783 16.682906569972687 14 18.946376371739373 35.75416804016072 28.220547083860342 17.07890850423956 15 18.53643377532009 23.252951862603158 40.99520354092819 17.215410821148566 16 19.467481227301047 20.396858704128324 39.03196622874594 21.103693839824697 17 20.21323404483956 20.50380972157884 28.48614574090989 30.79681049267171 18 23.392213268896494 23.44826634796764 31.807072853029116 21.352447530106748 19 28.485201841909984 24.84639858966968 25.525933261984253 21.142466306436084 20 30.271058749725903 23.809561842084246 25.421813941533443 20.497565466656408 21 24.929243878814987 26.84768229230955 27.53622030893088 20.686853519944588 22 24.500278087166894 24.50804710201225 25.797630958725478 25.194043852095383 23 21.86164473674657 28.885051979791847 25.353925821155826 23.899377462305758 24 22.145032259563514 24.85424021213041 33.831445777358915 19.169281750947167 25 20.864742177618556 26.08319671000373 31.08019801548866 21.971863096889056 26 20.13423695930924 29.858284456306915 26.767741307779325 23.23973727660452 27 20.418132735433822 28.77664881003379 28.528185550213248 22.277032904319135 28 18.78010493252574 26.890157747305167 33.71476533944786 20.614971980721226 29 18.975709848351734 24.629519642538188 33.75368302129 22.641087487820073 30 21.816700622828126 26.839913277464195 30.766678332290205 20.576707767417478 31 27.336404151413017 25.624026150358752 25.71899691127204 21.320572786956188 32 28.003232491036588 25.18395139355796 26.298260466750794 20.514555648654653 33 26.815880156774362 25.75101686965336 25.742303955808097 21.690799017764178 34 21.16657203474129 26.362518206359553 29.404777290661354 23.0661324682378 35 22.626057711437007 25.035614035342483 29.33427529613016 23.00405295709035 36 27.786498759135853 25.368955597538896 25.768733127805376 21.07581251551988 37 22.643338323896764 29.369489989588065 27.493309208242998 20.49386247827217 38 22.241309957553586 30.21159311273204 25.282044281932464 22.26505264778191 39 22.472419997299 28.949963187939005 26.15486042638096 22.42275638838104 40 24.662919145611667 26.060470526390688 25.68813867473676 23.588471653260882 41 20.530892362114507 24.463393418555313 27.1307067770496 27.875007442280577 42 22.79399912580431 25.90378329240684 25.28748985308575 26.014727728703097 43 22.773451170652585 26.506063461960146 26.106213324078283 24.61427204330899 44 21.58776881154403 28.216698880245357 27.745838494524662 22.449693813685954 45 20.89451129992318 30.808500318747434 24.783447787137707 23.51354059419168 46 23.137941399845783 29.43570813481201 26.71756944555373 20.708781019788482 47 22.62373426774494 26.88173526392142 27.675046069531955 22.819484398801684 48 23.792063406778357 24.30547185511005 29.166116058916725 22.73634867919487 49 22.253144998860062 24.32623763310791 29.758812023240246 23.661805344791784 50 21.2894241199594 29.614322868639753 27.252760178498566 21.843492832902285 51 20.780807774242593 29.78030387739188 25.325173205466484 24.113715142899046 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 409.0 1 845.0 2 1281.0 3 5788.5 4 10296.0 5 7669.0 6 5042.0 7 5140.5 8 5239.0 9 5397.0 10 5555.0 11 5510.5 12 5466.0 13 5425.5 14 5385.0 15 5178.0 16 4971.0 17 4782.0 18 4593.0 19 4563.5 20 4534.0 21 4862.5 22 5191.0 23 5847.0 24 6503.0 25 7108.5 26 8951.5 27 10189.0 28 11952.5 29 13716.0 30 16636.0 31 19556.0 32 21615.5 33 23675.0 34 30674.0 35 37673.0 36 41288.0 37 44903.0 38 49884.0 39 54865.0 40 67648.5 41 80432.0 42 89998.5 43 99565.0 44 103828.0 45 108091.0 46 104909.0 47 101727.0 48 103998.0 49 106269.0 50 106351.5 51 106434.0 52 101911.0 53 97388.0 54 87645.5 55 77903.0 56 74296.5 57 70690.0 58 65189.0 59 59688.0 60 55924.5 61 52161.0 62 47868.0 63 43575.0 64 37771.0 65 31967.0 66 28030.5 67 24094.0 68 19719.5 69 15345.0 70 12639.5 71 9934.0 72 8312.5 73 6691.0 74 5334.0 75 3093.5 76 2210.0 77 1666.5 78 1123.0 79 826.5 80 530.0 81 443.0 82 356.0 83 263.5 84 171.0 85 136.5 86 102.0 87 69.0 88 36.0 89 28.0 90 20.0 91 21.0 92 22.0 93 12.5 94 3.0 95 4.5 96 6.0 97 3.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1377266.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.793926326117926 #Duplication Level Percentage of deduplicated Percentage of total 1 79.55605345968813 17.33838767897142 2 5.790536086130005 2.523970336996891 3 2.00133878475045 1.3085109008536107 4 1.192901097060993 1.039919944947701 5 0.8414304551196852 0.9169036673715146 6 0.6181902422644598 0.8083675557261978 7 0.5106688911121187 0.7790636132956498 8 0.4180016090710742 0.728791701783499 9 0.3658176385183311 0.7175342396396652 >10 6.341740705797583 35.65913178138162 >50 2.1851846608093473 32.12275284731162 >100 0.17579247007688018 5.0704032929986536 >500 0.001339371200584895 0.21002318154952912 >1k 6.696856002924475E-4 0.37268533293031453 >5k 3.3484280014622376E-4 0.4035539242421459 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5530 0.40152011303553564 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2895 0.21019904651679486 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2212 0.16060804521421423 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.036521630534697 0.0 2 0.0 0.0 0.0 0.14710302875406783 0.0 3 0.0 0.0 0.0 0.2079482104401038 0.0 4 0.0 0.0 0.0 0.2997968438921748 0.0 5 0.0 0.0 0.0 0.5244448058690188 0.0 6 0.0 0.0 0.0 0.754247908537639 0.0 7 0.0 0.0 0.0 0.9083938759832886 0.0 8 0.0 0.0 0.0 1.3408448331694822 0.0 9 0.0 0.0 0.0 1.5508260568401455 0.0 10 0.0 0.0 0.0 1.9038442828037576 0.0 11 0.0 0.0 0.0 2.1572448604699455 0.0 12 0.0 0.0 0.0 2.399391257752678 0.0 13 0.0 0.0 0.0 2.490804245512486 0.0 14 0.0 0.0 0.0 2.5269628379702977 0.0 15 0.0 0.0 0.0 2.5942700974248982 0.0 16 0.0 0.0 0.0 2.7316437057184304 0.0 17 0.0 0.0 0.0 2.8782384811648587 0.0 18 0.0 0.0 0.0 3.089454034296933 0.0 19 0.0 0.0 0.0 3.18166570582589 0.0 20 0.0 0.0 0.0 3.2856398110459417 0.0 21 0.0 0.0 0.0 3.406967136341128 0.0 22 0.0 0.0 0.0 3.542452946634855 0.0 23 0.0 0.0 0.0 3.698051066388047 0.0 24 0.0 0.0 0.0 3.814876719529851 0.0 25 0.0 0.0 0.0 3.9097022652123847 0.0 26 0.0 0.0 0.0 3.9997357082800273 0.0 27 0.0 0.0 0.0 4.096449051962366 0.0 28 0.0 0.0 0.0 4.193452826106213 0.0 29 0.0 0.0 0.0 4.308971542171229 0.0 30 0.0 0.0 0.0 4.453896342463983 0.0 31 0.0 0.0 0.0 4.573916730682381 0.0 32 0.0 0.0 0.0 4.692702789439368 0.0 33 0.0 0.0 0.0 4.809383227350417 0.0 34 0.0 0.0 0.0 4.935430047645117 0.0 35 7.260761537713121E-5 0.0 0.0 5.089866445552276 0.0 36 7.260761537713121E-5 0.0 0.0 5.214751544000941 0.0 37 7.260761537713121E-5 0.0 0.0 5.342686162295446 0.0 38 7.260761537713121E-5 0.0 0.0 5.476284174589368 0.0 39 7.260761537713121E-5 0.0 0.0 5.636819612188205 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCGTAA 20 7.0337753E-4 45.0 44 TCGCGCG 40 6.8175723E-9 45.0 1 CGTTAGG 230 0.0 42.06522 2 GCGTAAG 140 0.0 41.785713 1 CGTTTTT 4520 0.0 41.316372 1 TAACGGG 365 0.0 41.30137 3 CGATCTA 55 6.184564E-11 40.909092 10 ATTCGGC 205 0.0 40.609756 17 ACGGGAT 305 0.0 40.573772 5 CGACGGT 90 0.0 40.0 28 CGTACTC 40 3.458881E-7 39.375 43 TCGTACT 40 3.458881E-7 39.375 42 ACGTATG 40 3.458881E-7 39.375 1 CTCGTAG 35 6.249191E-6 38.571426 1 ACTAACG 35 6.249191E-6 38.571426 1 AGTACGG 135 0.0 38.333332 2 GCTACGA 295 0.0 38.135593 10 AGCTACG 295 0.0 38.135593 9 CACGACG 90 0.0 37.5 26 CGGCACT 30 1.1400397E-4 37.499996 15 >>END_MODULE