SRR1546321_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546321_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1988413
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	11551	0.5809155341470812	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8788	0.4419604981460089	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCATA	20	7.0345297E-4	45.000004	39
AGTCCGC	20	7.0345297E-4	45.000004	20
CGTTGAT	40	6.8193913E-9	45.000004	25
GACCGAA	20	7.0345297E-4	45.000004	9
TACGATC	20	7.0345297E-4	45.000004	45
GAACGAT	20	7.0345297E-4	45.000004	9
CGTAATT	20	7.0345297E-4	45.000004	33
TTACGCA	20	7.0345297E-4	45.000004	42
ACGTACG	20	7.0345297E-4	45.000004	31
ACGTAAC	20	7.0345297E-4	45.000004	32
CGGTATG	20	7.0345297E-4	45.000004	29
CGTCAGT	40	6.8193913E-9	45.000004	27
CCGTTCA	20	7.0345297E-4	45.000004	18
TCGCGAT	20	7.0345297E-4	45.000004	42
AATCGGT	20	7.0345297E-4	45.000004	3
CTTACGC	20	7.0345297E-4	45.000004	41
TCGCCTA	25	3.8918377E-5	45.0	10
CTTCGAA	25	3.8918377E-5	45.0	34
AACGTCG	45	3.8562575E-10	45.0	20
CTCGTTA	25	3.8918377E-5	45.0	33