##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546321_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1988413 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.23438440605649 31.0 31.0 33.0 30.0 34.0 2 31.56695766925684 31.0 31.0 34.0 30.0 34.0 3 31.615627638724952 31.0 31.0 34.0 30.0 34.0 4 35.46075287176256 37.0 35.0 37.0 33.0 37.0 5 35.378505370866115 37.0 35.0 37.0 33.0 37.0 6 35.41748369176826 37.0 35.0 37.0 33.0 37.0 7 35.852807741651255 37.0 35.0 37.0 35.0 37.0 8 35.77860635592304 37.0 35.0 37.0 35.0 37.0 9 37.54448095038606 39.0 37.0 39.0 35.0 39.0 10 37.08539574022097 39.0 37.0 39.0 33.0 39.0 11 36.711112832193315 39.0 35.0 39.0 32.0 39.0 12 35.5690628657125 37.0 35.0 39.0 31.0 39.0 13 35.024571354140214 37.0 35.0 39.0 30.0 39.0 14 35.88097844864221 37.0 35.0 40.0 30.0 41.0 15 36.30473950834158 37.0 35.0 40.0 31.0 41.0 16 36.515287317071454 37.0 35.0 40.0 32.0 41.0 17 36.47690696047552 37.0 35.0 40.0 32.0 41.0 18 36.386758183536315 37.0 35.0 40.0 31.0 41.0 19 36.269116627179564 37.0 35.0 40.0 31.0 41.0 20 36.080422930246385 36.0 35.0 40.0 31.0 41.0 21 35.887643562982134 36.0 34.0 40.0 31.0 41.0 22 35.760516552647765 35.0 34.0 40.0 30.0 41.0 23 35.7335664170371 35.0 34.0 40.0 31.0 41.0 24 35.7197277426772 35.0 34.0 40.0 31.0 41.0 25 35.663760496436105 35.0 34.0 40.0 31.0 41.0 26 35.53564073459588 35.0 34.0 40.0 30.0 41.0 27 35.4091348225947 35.0 34.0 40.0 30.0 41.0 28 35.43493378890603 36.0 34.0 40.0 30.0 41.0 29 35.44270782780036 36.0 34.0 40.0 30.0 41.0 30 35.33382602105297 36.0 34.0 40.0 30.0 41.0 31 35.057072147486465 35.0 34.0 40.0 29.0 41.0 32 34.81221858839185 35.0 34.0 40.0 29.0 41.0 33 34.59847576936984 35.0 34.0 40.0 27.0 41.0 34 34.375493421135346 35.0 34.0 40.0 25.0 41.0 35 34.1733674040554 35.0 33.0 40.0 24.0 41.0 36 33.912583049899595 35.0 33.0 40.0 23.0 41.0 37 33.68562366067814 35.0 33.0 39.0 23.0 41.0 38 33.67615832324572 35.0 33.0 39.0 23.0 41.0 39 33.66839736010577 35.0 33.0 39.0 23.0 41.0 40 33.434799008053155 35.0 33.0 39.0 23.0 41.0 41 33.421287227552824 35.0 33.0 39.0 23.0 41.0 42 33.33485598816745 35.0 33.0 39.0 22.0 41.0 43 33.24056420874336 35.0 32.0 39.0 23.0 41.0 44 33.032095947874005 35.0 32.0 39.0 21.0 41.0 45 32.97917384366326 35.0 32.0 39.0 22.0 41.0 46 32.93739831715041 35.0 32.0 39.0 22.0 41.0 47 32.87667451379568 35.0 32.0 39.0 21.0 40.0 48 32.860268465354025 35.0 32.0 38.0 21.0 40.0 49 32.90850140287757 35.0 32.0 38.0 21.0 40.0 50 32.71876365724827 35.0 32.0 38.0 20.0 40.0 51 32.50491874675935 35.0 32.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 1.0 12 6.0 13 10.0 14 25.0 15 62.0 16 186.0 17 486.0 18 1157.0 19 2245.0 20 4057.0 21 6539.0 22 10002.0 23 14978.0 24 21585.0 25 30594.0 26 39971.0 27 45578.0 28 48628.0 29 53411.0 30 62201.0 31 75427.0 32 94957.0 33 125557.0 34 230233.0 35 336900.0 36 128328.0 37 150484.0 38 212230.0 39 292514.0 40 58.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.858723514682314 23.493811396324606 29.30990694589102 15.337558143102061 2 30.342438919882337 25.696824553048085 30.14187696419205 13.818859562877531 3 26.829184882617447 25.45401785242804 33.77683609994503 13.939961165009482 4 24.77297221452485 27.89727285025797 32.330909121998296 14.998845813218884 5 23.09107816132765 31.53801549275729 31.37542351614076 13.995482829774296 6 21.183074140030264 39.45161291944883 28.28682974814588 11.078483192375025 7 85.45181509072813 4.684087259538134 7.935423878238574 1.9286737714951572 8 87.03855788510737 3.4450086576581427 7.320611965421671 2.1958214918128176 9 83.16763167410393 4.65456622945032 9.362843634597038 2.8149584618487205 10 56.842014209321704 20.1156902514719 12.684739035602766 10.357556503603629 11 51.32052546427729 17.56933795946818 19.459237090081384 11.650899486173143 12 44.503732373505905 20.392845953028875 22.78575929648418 12.317662376981039 13 20.168194434456023 44.99558190375943 23.633923133674944 11.202300528109603 14 13.81383042657637 46.347413741511446 27.54669175870405 12.292064073208131 15 11.354180444404658 21.151843203600055 54.45337563172238 13.040600720272902 16 13.499609990479843 15.795008381055645 51.546836597829525 19.158545030634983 17 13.932920374187857 16.381808004675086 29.48512205462346 40.2001495665136 18 20.904007366678854 20.882532954672897 37.07846408165708 21.134995596991168 19 29.58022302207841 22.285561399970728 26.143311273865137 21.99090430408572 20 31.52383332838802 21.607281787033177 25.048619175191472 21.820265709387336 21 21.881470298172463 28.001275388965972 28.26922777109182 21.848026541769745 22 22.69900669528916 24.313359447961766 25.246465397279138 27.74116845946994 23 17.784333536342803 31.120848636576003 25.383408778759748 25.71140904832145 24 19.896570782830327 22.521981097488297 40.55555862891663 17.025889490764744 25 15.72037599834642 23.97846926166747 38.39222535760931 21.908929382376797 26 15.832274281047248 34.756763308226205 28.09159867693482 21.31936373379172 27 17.168867835806747 34.20028937650277 28.92326694705778 19.707575840632703 28 13.779883756543535 28.309812901042186 40.7031637793557 17.20713956305858 29 14.148318281966574 24.14644241412624 39.71946471884865 21.985774585058536 30 17.577233703461 29.529780784977767 32.894876466810466 19.998109044750763 31 29.096671566721806 26.47085892115974 24.450101663990328 19.98236784812813 32 30.27243334257018 27.076668679997567 25.309631349221718 17.34126662821054 33 28.345972391047535 27.221608388197023 25.06712639677974 19.365292823975704 34 18.5247732739627 27.555341873142048 29.998898619150044 23.920986233745204 35 19.530499951468837 25.75863263818935 31.587653068049747 23.12321434229207 36 31.32281875043062 23.199657214069713 26.3875261326495 19.08999790285016 37 20.90511377666511 30.84525196727239 29.206910234443246 19.04272402161925 38 21.310110122997585 32.28519427302074 22.952676330319708 23.45201927366196 39 20.49730111400398 30.606921197960386 26.766119513400888 22.12965817463475 40 23.28213504940875 24.957994139044555 24.756024025189937 27.003846786356757 41 16.65881283214302 23.854098720939763 26.095081856737007 33.39200659018021 42 22.109793086245162 26.47548572655681 23.556373851911047 27.858347335286986 43 22.633175301106963 27.023611292020323 25.40166454353296 24.941548863339758 44 20.4809061296622 30.879751842298354 27.480508324980775 21.158833703058672 45 16.807071770301242 37.10667753630659 22.405556592116426 23.68069410127574 46 23.056125664034585 31.97841695864994 26.289608848865903 18.675848528449574 47 22.41189330385589 26.21039995212262 27.273307909372953 24.104398834648535 48 23.883871207842635 22.779472876107732 30.09193764072152 23.244718275328115 49 21.246541840150915 21.83852147416055 32.247425459399025 24.66751122628951 50 19.16628990053877 32.441751286075885 25.78775133737307 22.604207476012277 51 17.990528124690393 34.19385208203728 22.728980347644075 25.086639445628244 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1068.0 1 1466.5 2 1865.0 3 8792.5 4 15720.0 5 12107.0 6 8494.0 7 9231.0 8 9968.0 9 10676.0 10 11384.0 11 11513.5 12 11643.0 13 11396.0 14 11149.0 15 10603.5 16 10058.0 17 9440.5 18 8823.0 19 8401.5 20 7980.0 21 8529.0 22 9078.0 23 8316.5 24 7555.0 25 8375.0 26 10264.0 27 11333.0 28 12696.5 29 14060.0 30 17319.0 31 20578.0 32 24856.5 33 29135.0 34 34245.0 35 39355.0 36 41161.0 37 42967.0 38 53909.5 39 64852.0 40 100275.5 41 135699.0 42 178144.5 43 220590.0 44 219641.0 45 218692.0 46 207578.0 47 196464.0 48 185754.0 49 175044.0 50 166271.5 51 157499.0 52 143637.5 53 129776.0 54 115398.5 55 101021.0 56 89137.5 57 77254.0 58 69598.0 59 61942.0 60 57506.5 61 53071.0 62 45989.0 63 38907.0 64 33317.5 65 27728.0 66 23159.0 67 18590.0 68 15162.5 69 11735.0 70 9582.0 71 7429.0 72 6051.5 73 4674.0 74 3600.0 75 2182.5 76 1839.0 77 1429.0 78 1019.0 79 672.0 80 325.0 81 265.0 82 205.0 83 125.5 84 46.0 85 34.0 86 22.0 87 17.0 88 12.0 89 6.5 90 1.0 91 6.0 92 11.0 93 10.5 94 10.0 95 16.0 96 22.0 97 11.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1988413.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.249210714044555 #Duplication Level Percentage of deduplicated Percentage of total 1 81.82851236341673 14.933057645367917 2 7.917240792758487 2.8896679100175753 3 2.5941391628274104 1.4202297661197762 4 1.1482940696038857 0.8382184175155621 5 0.6720253143247744 0.6131965783142416 6 0.4613978401674293 0.505208784493228 7 0.33217086254427136 0.42432992445454365 8 0.24709058373203202 0.3607366502385697 9 0.1826757381436193 0.30003192339538814 >10 1.9640896503270648 8.381205735255117 >50 0.9030566711586635 12.145743958750122 >100 1.738223111610182 54.88268192411461 >500 0.00942126347752952 1.0195485907962325 >1k 0.0011083839385328848 0.2576430944403732 >5k 2.770959846332212E-4 0.4443900910582924 >10k+ 2.770959846332212E-4 0.5841090056684496 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 11551 0.5809155341470812 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8788 0.4419604981460089 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09097707568799841 0.0 2 0.0 0.0 0.0 0.3515366274511382 0.0 3 0.0 0.0 0.0 0.48772563848657197 0.0 4 0.0 0.0 0.0 0.7024194671831254 0.0 5 0.0 0.0 0.0 1.1087736803169161 0.0 6 0.0 0.0 0.0 1.523778007888703 0.0 7 0.0 0.0 0.0 1.766383543056699 0.0 8 0.0 0.0 0.0 2.393315674359401 0.0 9 0.0 0.0 0.0 2.6655931137042455 0.0 10 0.0 0.0 0.0 3.141299116431043 0.0 11 0.0 0.0 0.0 3.573754546967858 0.0 12 0.0 0.0 0.0 3.9637137757598646 0.0 13 0.0 0.0 0.0 4.114738738883723 0.0 14 0.0 0.0 0.0 4.170562151826608 0.0 15 0.0 0.0 0.0 4.26008077798727 0.0 16 0.0 0.0 0.0 4.485687832457342 0.0 17 0.0 0.0 0.0 4.736692025248276 0.0 18 0.0 0.0 0.0 5.141185457950637 0.0 19 0.0 0.0 0.0 5.286225748876114 0.0 20 0.0 0.0 0.0 5.4335794425001245 0.0 21 0.0 0.0 0.0 5.626044488745547 0.0 22 0.0 0.0 0.0 5.81066408236116 0.0 23 0.0 0.0 0.0 6.032801032783431 0.0 24 0.0 0.0 0.0 6.196901750290307 0.0 25 0.0 0.0 0.0 6.315187036093608 0.0 26 0.0 0.0 0.0 6.439104954554209 0.0 27 0.0 0.0 0.0 6.562922290288788 0.0 28 0.0 0.0 0.0 6.690058855982133 0.0 29 0.0 0.0 0.0 6.821269022079417 0.0 30 0.0 0.0 0.0 7.007497939311401 0.0 31 0.0 0.0 0.0 7.174917886777043 0.0 32 0.0 0.0 0.0 7.312615638702825 0.0 33 0.0 0.0 0.0 7.449760185635479 0.0 34 0.0 0.0 0.0 7.6071218604988 0.0 35 0.0 0.0 0.0 7.812159747497125 0.0 36 0.0 0.0 0.0 7.968364721011178 0.0 37 0.0 0.0 0.0 8.119842306402141 0.0 38 0.0 0.0 0.0 8.269157363183604 0.0 39 0.0 0.0 0.0 8.415656103636417 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCCATA 20 7.0345297E-4 45.000004 39 AGTCCGC 20 7.0345297E-4 45.000004 20 CGTTGAT 40 6.8193913E-9 45.000004 25 GACCGAA 20 7.0345297E-4 45.000004 9 TACGATC 20 7.0345297E-4 45.000004 45 GAACGAT 20 7.0345297E-4 45.000004 9 CGTAATT 20 7.0345297E-4 45.000004 33 TTACGCA 20 7.0345297E-4 45.000004 42 ACGTACG 20 7.0345297E-4 45.000004 31 ACGTAAC 20 7.0345297E-4 45.000004 32 CGGTATG 20 7.0345297E-4 45.000004 29 CGTCAGT 40 6.8193913E-9 45.000004 27 CCGTTCA 20 7.0345297E-4 45.000004 18 TCGCGAT 20 7.0345297E-4 45.000004 42 AATCGGT 20 7.0345297E-4 45.000004 3 CTTACGC 20 7.0345297E-4 45.000004 41 TCGCCTA 25 3.8918377E-5 45.0 10 CTTCGAA 25 3.8918377E-5 45.0 34 AACGTCG 45 3.8562575E-10 45.0 20 CTCGTTA 25 3.8918377E-5 45.0 33 >>END_MODULE