##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546320_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3492769 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.10834956448594 31.0 31.0 33.0 30.0 34.0 2 31.442338728956884 31.0 31.0 34.0 30.0 34.0 3 31.561653805333247 31.0 31.0 34.0 30.0 34.0 4 35.40077600322266 37.0 35.0 37.0 33.0 37.0 5 35.29410590852129 37.0 35.0 37.0 33.0 37.0 6 35.32518697915608 37.0 35.0 37.0 33.0 37.0 7 35.782156793077355 37.0 35.0 37.0 35.0 37.0 8 35.69228597711443 37.0 35.0 37.0 35.0 37.0 9 37.436991681957785 39.0 37.0 39.0 35.0 39.0 10 36.76892030363302 39.0 37.0 39.0 32.0 39.0 11 36.56715889313035 39.0 35.0 39.0 32.0 39.0 12 35.963458505271895 37.0 35.0 39.0 31.0 39.0 13 35.65281013430891 37.0 35.0 39.0 30.0 39.0 14 36.58388630911463 38.0 35.0 41.0 31.0 41.0 15 36.83362226359659 38.0 35.0 41.0 31.0 41.0 16 36.89729295009203 38.0 35.0 41.0 32.0 41.0 17 36.83852181464047 38.0 35.0 41.0 32.0 41.0 18 36.78777296752233 38.0 35.0 40.0 31.0 41.0 19 36.70893437269971 38.0 35.0 40.0 31.0 41.0 20 36.605460309571 38.0 35.0 40.0 31.0 41.0 21 36.46811398062683 38.0 35.0 40.0 31.0 41.0 22 36.35234165213903 38.0 35.0 40.0 31.0 41.0 23 36.27664698123466 38.0 35.0 40.0 30.0 41.0 24 36.27513729078562 38.0 35.0 40.0 30.0 41.0 25 36.21653421683484 38.0 35.0 40.0 30.0 41.0 26 36.116247882410775 38.0 35.0 40.0 30.0 41.0 27 36.00696524734387 38.0 34.0 40.0 30.0 41.0 28 35.986705390479585 38.0 35.0 40.0 30.0 41.0 29 35.94134310056004 38.0 35.0 40.0 30.0 41.0 30 35.804730859670364 38.0 34.0 40.0 30.0 41.0 31 35.613456830383 37.0 34.0 40.0 29.0 41.0 32 35.46564029857113 37.0 34.0 40.0 29.0 41.0 33 35.28822776427528 37.0 34.0 40.0 27.0 41.0 34 35.127410372687116 37.0 34.0 40.0 27.0 41.0 35 34.96856934999137 37.0 34.0 40.0 26.0 41.0 36 34.771392840465545 37.0 33.0 40.0 25.0 41.0 37 34.58090243013494 37.0 33.0 40.0 24.0 41.0 38 34.531594846381196 37.0 33.0 40.0 24.0 41.0 39 34.49107713679319 37.0 33.0 40.0 24.0 41.0 40 34.29924252076218 36.0 33.0 40.0 23.0 41.0 41 34.2224936719262 36.0 33.0 40.0 23.0 41.0 42 34.10841570112424 36.0 33.0 40.0 23.0 41.0 43 34.05826666464344 36.0 33.0 40.0 23.0 41.0 44 33.88825857077866 36.0 33.0 40.0 23.0 41.0 45 33.8577163276472 36.0 33.0 40.0 23.0 41.0 46 33.755970406287965 35.0 33.0 40.0 23.0 41.0 47 33.687907788920484 35.0 32.0 40.0 23.0 41.0 48 33.619133129044606 35.0 32.0 40.0 23.0 41.0 49 33.61560670058627 36.0 32.0 40.0 23.0 41.0 50 33.46541640744063 35.0 32.0 39.0 22.0 41.0 51 33.25127370289876 35.0 32.0 39.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 9.0 12 7.0 13 25.0 14 47.0 15 136.0 16 364.0 17 984.0 18 2123.0 19 4147.0 20 7213.0 21 11531.0 22 17157.0 23 24666.0 24 34216.0 25 47335.0 26 60536.0 27 70039.0 28 78123.0 29 88144.0 30 103593.0 31 124452.0 32 153626.0 33 195250.0 34 316047.0 35 421942.0 36 261522.0 37 328043.0 38 474557.0 39 666842.0 40 90.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.28027132627437 23.257163585682306 29.633966632204995 13.828598455838334 2 29.55726531013073 25.476749249664092 32.064416513087465 12.90156892711771 3 28.569424430874186 25.410984808900906 32.177106473402624 13.842484286822291 4 25.120069492142193 27.8611611589544 32.03255067827274 14.986218670630667 5 22.555800283385473 32.46152264864926 30.39556867345078 14.587108394514495 6 20.452197096343905 40.96277194397912 28.075861873487767 10.50916908618921 7 87.65930412231671 4.108201830696505 6.580710032641724 1.6517840143450653 8 89.16195144883615 3.074237088109749 5.856499528024899 1.907311935029199 9 84.23162253215143 4.4281771854938015 8.27077313157555 3.069427150779224 10 43.5670380720855 23.354937014156963 19.891381308068183 13.186643605689355 11 40.15329957406287 21.84224035428624 22.182543420420874 15.821916651230012 12 35.689448686701006 22.241436522140457 25.211114734469987 16.858000056688546 13 23.102100367931573 34.06159983669117 26.17513497170869 16.661164823668557 14 19.326185041152165 36.66200083658553 27.218404652583665 16.79340946967864 15 18.546803410131048 23.027460447570395 42.36899147925328 16.05674466304528 16 18.679477514831355 20.471207801031216 40.863710139433785 19.985604544703644 17 19.634479119575328 20.168009965732058 28.783752947876025 31.413757966816586 18 22.679913844860625 22.8604010170727 33.70512049322472 20.75456464484196 19 27.531565929496054 24.367972803240065 26.90948070141484 21.190980565849042 20 29.53542017808793 23.584411107634086 25.719880129490384 21.1602885847876 21 23.74173614115334 27.214396371474898 28.730786376081557 20.313081111290213 22 24.03053279504027 23.5509133297965 27.04541869216086 25.373135183002372 23 20.67394093339697 29.683383012160263 25.83958458174589 23.803091472696877 24 21.26115411583188 25.07735266775444 34.458534188776866 19.202959027636812 25 19.11686687553629 25.63390249970725 33.597641298350965 21.651589326405496 26 19.67645154890003 30.425144061917635 27.383316789630236 22.515087599552103 27 20.240817529014947 29.61006009844911 28.77447664016716 21.374645732368787 28 17.676176122726698 27.469781139262288 35.01579978521339 19.83824295279762 29 18.868467969109894 24.430960077806464 34.54474086319479 22.155831089888853 30 20.896200120878305 27.628251395955473 30.62873611166384 20.84681237150238 31 26.525630524091344 26.749636176912933 25.794147852320037 20.93058544667569 32 27.97319261594454 26.005269744434862 26.336124719384536 19.685412920236065 33 26.33678322270955 26.484717426202536 25.85699197398969 21.32150737709823 34 20.263378425541454 27.341945602471853 29.210176796690533 23.18449917529616 35 21.241169971446723 25.934924410975935 30.22083624768772 22.60306936988962 36 28.48124224648123 25.1828849832325 26.266752825623453 20.069119944662816 37 21.52074757878348 29.771336151918437 28.41207076677559 20.295845502522496 38 21.592638963527218 30.312912190872055 25.468618165129158 22.625830680471566 39 20.894367763800012 29.25950728490776 27.394081887465216 22.45204306382701 40 22.993533211042585 25.60034746071097 26.828141225486142 24.577978102760305 41 19.404833242622114 24.647664932894216 27.803212866353316 28.144288958130353 42 22.505439094311704 26.782160515052674 25.703159871150945 25.00924051948468 43 22.61286102802676 27.430070525706107 26.53917278812312 23.417895658144012 44 20.84140119200554 29.548590244588173 27.72170160694853 21.888306956457757 45 20.12134212139423 31.42017121659062 25.080559292641453 23.377927369373698 46 22.347398296308747 29.703968398711737 27.508260637906485 20.44037266707303 47 22.16619535961296 27.362702772499414 27.96832541745532 22.502776450432307 48 23.31425296090294 25.020950426438166 28.769409027622494 22.8953875850364 49 21.20446556872212 24.398034911555847 30.735241866839747 23.662257652882282 50 20.592286521095442 29.24272976540962 27.627478370313067 22.53750534318187 51 20.030898121232752 30.261176733989565 25.97778438826043 23.73014075651725 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1106.0 1 2127.0 2 3148.0 3 12879.5 4 22611.0 5 17072.0 6 11533.0 7 11824.0 8 12115.0 9 12827.5 10 13540.0 11 13397.0 12 13254.0 13 12967.0 14 12680.0 15 12361.5 16 12043.0 17 11452.0 18 10861.0 19 10972.5 20 11084.0 21 11379.5 22 11675.0 23 12910.0 24 14145.0 25 15785.5 26 22090.5 27 26755.0 28 32123.5 29 37492.0 30 42070.0 31 46648.0 32 55430.0 33 64212.0 34 80369.5 35 96527.0 36 100800.5 37 105074.0 38 124297.5 39 143521.0 40 177186.5 41 210852.0 42 251200.0 43 291548.0 44 301774.5 45 312001.0 46 313225.5 47 314450.0 48 312412.5 49 310375.0 50 299604.0 51 288833.0 52 265907.5 53 242982.0 54 215974.0 55 188966.0 56 177134.5 57 165303.0 58 152381.0 59 139459.0 60 125516.5 61 111574.0 62 95636.5 63 79699.0 64 68449.5 65 57200.0 66 45773.0 67 34346.0 68 29287.5 69 24229.0 70 19009.0 71 13789.0 72 11314.0 73 8839.0 74 7124.0 75 4109.0 76 2809.0 77 1932.5 78 1056.0 79 956.0 80 856.0 81 646.5 82 437.0 83 305.5 84 174.0 85 130.5 86 87.0 87 53.5 88 20.0 89 17.0 90 14.0 91 10.0 92 6.0 93 5.0 94 4.0 95 2.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3492769.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.677793636091614 #Duplication Level Percentage of deduplicated Percentage of total 1 80.70620923505545 14.26707712008541 2 8.01656498794042 2.83430363054256 3 2.5866689203209288 1.3717979813497583 4 1.206063590415064 0.8528217305344489 5 0.6759808622484056 0.5974925092387293 6 0.4535280696892414 0.48104253744848313 7 0.349439428878048 0.4324122678413891 8 0.2844024633152655 0.40220864448667026 9 0.2330085653717635 0.3707169600675418 >10 2.4833988922478163 10.67166801246248 >50 1.2586222857751694 16.350602020324672 >100 1.737776116164429 49.53399506385218 >500 0.006211571332695099 0.6935460092321293 >1k 0.0017980864384117392 0.5730474109029773 >5k 1.6346240349197628E-4 0.2286005782690461 >10k+ 1.6346240349197628E-4 0.33866752336154976 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11720 0.335550389962806 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7911 0.22649651322489403 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 3548 0.10158129552798939 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06046778358374115 0.0 2 0.0 0.0 0.0 0.22632472974880388 0.0 3 0.0 0.0 0.0 0.31221646779389073 0.0 4 0.0 0.0 0.0 0.4562855430748498 0.0 5 0.0 0.0 0.0 0.7879994354049753 0.0 6 0.0 0.0 0.0 1.094060328638968 0.0 7 0.0 0.0 0.0 1.3062701827690293 0.0 8 0.0 0.0 0.0 1.8652536139664546 0.0 9 0.0 0.0 0.0 2.103631817620919 0.0 10 0.0 0.0 0.0 2.571226439538372 0.0 11 0.0 0.0 0.0 2.9087237088968667 0.0 12 0.0 0.0 0.0 3.25498193553596 0.0 13 0.0 0.0 0.0 3.3808419623513606 0.0 14 0.0 0.0 0.0 3.42630732235656 0.0 15 0.0 0.0 0.0 3.506186638738491 0.0 16 0.0 0.0 0.0 3.6838107530157305 0.0 17 0.0 0.0 0.0 3.8762368768160735 0.0 18 0.0 0.0 0.0 4.162055950450775 0.0 19 0.0 0.0 0.0 4.280042567945375 0.0 20 0.0 0.0 0.0 4.413747373502227 0.0 21 0.0 0.0 0.0 4.583870275990196 0.0 22 0.0 0.0 0.0 4.756054580191247 0.0 23 0.0 0.0 0.0 4.95827236212873 0.0 24 0.0 0.0 0.0 5.103257615948836 0.0 25 0.0 0.0 0.0 5.225567450925039 0.0 26 0.0 0.0 0.0 5.348965247916481 0.0 27 0.0 0.0 0.0 5.479263014530878 0.0 28 2.863057934836229E-5 0.0 0.0 5.60981845635941 0.0 29 2.863057934836229E-5 0.0 0.0 5.748390460405483 0.0 30 5.726115869672458E-5 0.0 0.0 5.928877632617559 0.0 31 5.726115869672458E-5 0.0 0.0 6.081736295758466 0.0 32 5.726115869672458E-5 0.0 0.0 6.221310370081731 0.0 33 5.726115869672458E-5 0.0 0.0 6.370704733121486 0.0 34 5.726115869672458E-5 0.0 0.0 6.523906963214572 0.0 35 5.726115869672458E-5 0.0 0.0 6.714672513412711 0.0 36 5.726115869672458E-5 0.0 0.0 6.865154838467703 0.0 37 5.726115869672458E-5 0.0 0.0 7.025915541508757 0.0 38 8.589173804508686E-5 0.0 0.0 7.187764206565049 0.0 39 1.1452231739344915E-4 0.0 0.0 7.381421445277372 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGCGC 25 3.892446E-5 45.0 34 CGTTTTT 10375 0.0 42.80964 1 TCGTTAG 70 0.0 41.785713 1 AACGTAG 195 0.0 40.384617 1 TCGATAG 120 0.0 39.375004 1 GAACGTA 40 3.4609184E-7 39.375 45 TAGCCGT 110 0.0 38.863636 44 TCACGAC 400 0.0 38.8125 25 TAATACG 70 0.0 38.571426 1 ATCCGCG 35 6.2519503E-6 38.571426 1 TAGGGCG 1505 0.0 38.122925 5 AGGGCGA 4005 0.0 37.977524 6 CGGGTAT 435 0.0 37.75862 6 ACGGGAT 1225 0.0 37.653065 5 GGGCGAT 7580 0.0 37.549473 7 GTCGTAA 30 1.1403983E-4 37.500004 39 GTATCCG 60 1.5643309E-10 37.500004 1 CTCACGA 415 0.0 37.409637 24 CACGACG 415 0.0 37.409637 26 CGACGGT 405 0.0 37.22222 28 >>END_MODULE