##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546319_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2129139 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.122894747595154 31.0 31.0 33.0 30.0 34.0 2 31.45311132810023 31.0 31.0 34.0 30.0 34.0 3 31.546562248871492 31.0 31.0 34.0 30.0 34.0 4 35.38149411569653 37.0 35.0 37.0 33.0 37.0 5 35.270660581577815 37.0 35.0 37.0 33.0 37.0 6 35.30590910222395 37.0 35.0 37.0 32.0 37.0 7 35.75130181730737 37.0 35.0 37.0 35.0 37.0 8 35.673699556487385 37.0 35.0 37.0 35.0 37.0 9 37.4245706832668 39.0 37.0 39.0 35.0 39.0 10 36.92664922299578 39.0 37.0 39.0 32.0 39.0 11 36.567463655496425 39.0 35.0 39.0 32.0 39.0 12 35.55136137189728 37.0 35.0 39.0 31.0 39.0 13 35.05481746377291 37.0 34.0 39.0 30.0 39.0 14 35.88616525271483 38.0 35.0 40.0 30.0 41.0 15 36.295724234068324 38.0 35.0 40.0 31.0 41.0 16 36.47111907677235 38.0 35.0 40.0 31.0 41.0 17 36.43752615493869 37.0 35.0 40.0 31.0 41.0 18 36.36921967048652 37.0 35.0 40.0 31.0 41.0 19 36.23818078575424 37.0 35.0 40.0 31.0 41.0 20 36.06759821693182 36.0 34.0 40.0 31.0 41.0 21 35.897554363524414 36.0 34.0 40.0 30.0 41.0 22 35.76021340081601 36.0 34.0 40.0 30.0 41.0 23 35.73583077478737 36.0 34.0 40.0 30.0 41.0 24 35.6964937470029 36.0 34.0 40.0 30.0 41.0 25 35.643266597436806 36.0 34.0 40.0 30.0 41.0 26 35.50147923644253 35.0 34.0 40.0 30.0 41.0 27 35.3951672483572 36.0 34.0 40.0 29.0 41.0 28 35.37722807200469 36.0 34.0 40.0 29.0 41.0 29 35.37005146211685 36.0 34.0 40.0 29.0 41.0 30 35.251670276106914 36.0 34.0 40.0 29.0 41.0 31 35.006604547659876 35.0 34.0 40.0 29.0 41.0 32 34.799601623003475 35.0 34.0 40.0 27.0 41.0 33 34.627741542473274 35.0 33.0 40.0 26.0 41.0 34 34.44670874001181 35.0 34.0 40.0 25.0 41.0 35 34.27554800320693 35.0 33.0 40.0 24.0 41.0 36 34.02758016268548 35.0 33.0 40.0 23.0 41.0 37 33.839186638354754 35.0 33.0 40.0 23.0 41.0 38 33.82663179811182 35.0 33.0 40.0 23.0 41.0 39 33.8215607341747 35.0 33.0 40.0 23.0 41.0 40 33.609773246368604 35.0 33.0 40.0 23.0 41.0 41 33.56146780459143 35.0 33.0 39.0 23.0 41.0 42 33.429833373960086 35.0 33.0 39.0 23.0 41.0 43 33.363207850685185 35.0 32.0 39.0 23.0 41.0 44 33.192988809091375 35.0 32.0 39.0 22.0 41.0 45 33.15611803644572 35.0 32.0 39.0 23.0 41.0 46 33.09883056014662 35.0 32.0 39.0 22.0 41.0 47 33.024541845318694 35.0 32.0 39.0 22.0 41.0 48 32.97919299773289 35.0 32.0 39.0 22.0 41.0 49 33.018842828016396 35.0 32.0 39.0 22.0 40.0 50 32.83965255438935 35.0 32.0 38.0 21.0 40.0 51 32.616590086415215 35.0 31.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 6.0 12 2.0 13 8.0 14 32.0 15 86.0 16 243.0 17 671.0 18 1506.0 19 3048.0 20 5143.0 21 8151.0 22 11934.0 23 17092.0 24 23990.0 25 32435.0 26 40964.0 27 48121.0 28 52393.0 29 58757.0 30 69225.0 31 82537.0 32 102033.0 33 132438.0 34 233458.0 35 328202.0 36 143297.0 37 172020.0 38 238379.0 39 322922.0 40 41.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.56987918590566 23.230798928580988 30.058582365923503 14.140739519589843 2 29.952483139898334 26.0364870494599 30.28242871883893 13.728601091802837 3 28.652380140516893 24.360081704388488 32.306110592121975 14.681427562972637 4 25.266363539440125 27.644695813659887 31.371272613013996 15.717668033885998 5 22.607495330272002 31.565200768949325 31.314254259585685 14.51304964119299 6 21.147703367417535 40.832045253973554 27.227109174177922 10.793142204430993 7 85.85071242413012 4.931007322678322 7.207279562301945 2.011000690889604 8 87.73043939357646 3.409547239517946 6.392161338456531 2.467852028449059 9 83.19132757419784 5.197077316229707 8.413260007918694 3.1983351016537673 10 55.427146841986364 20.52026664299513 12.440145993286487 11.612440521732024 11 48.54145267171378 18.933381052153006 19.302403459802296 13.22276281633092 12 42.227444990674634 20.5186227860182 23.80873207432676 13.44520014898041 13 21.282405704841253 41.80163906630802 24.002143589497916 12.91381163935281 14 14.951114041873264 43.663612380403535 28.55745914193484 12.827814435788362 15 13.042549124317388 21.174286883101573 52.0798313308807 13.70333266170034 16 14.761178110024757 16.52348672397622 48.25931984713069 20.45601531886833 17 15.560562274233858 16.753110059981992 28.95306506526817 38.733262600515985 18 22.76882815072196 20.75331859498135 34.851176931144465 21.62667632315222 19 30.263500879933158 22.894137019706086 24.94459027804197 21.897771822318788 20 32.35735196245994 21.6753344896693 23.80478681758213 22.16252673028863 21 22.963132045394875 27.37505630210146 27.538596587634718 22.123215064868944 22 23.05283966899296 23.998245300095487 24.872777211821305 28.076137819090253 23 19.315413413591127 30.591567765185836 24.28700051992848 25.806018301294557 24 20.8919661891497 23.381094423614428 37.69039973435272 18.03653965288316 25 17.052949572573702 24.41090036864667 36.27658879951004 22.259561259269592 26 16.639589993889548 33.29420953728244 28.272179505424493 21.794020963403515 27 18.800980114496987 31.80473421415887 29.0851372315288 20.309148439815345 28 15.597290735832653 26.62099562311338 39.13445763757087 18.647256003483097 29 15.582542990382498 23.79562818585353 38.10568497406698 22.51614384969699 30 19.351437365056956 29.17357673688754 31.51428817000675 19.960697728048757 31 29.766257628083466 26.09881271255658 23.0267258267309 21.10820383262906 32 30.147914250784 26.305234181516568 24.921623247707174 18.62522831999226 33 28.51340377495316 26.290392501382016 24.498917167925626 20.697286555739197 34 19.71120720629325 26.934455664942497 28.613209377123805 24.74112775164045 35 20.45507597202437 25.009827916354922 30.83438892434923 23.700707187271476 36 30.880651756414213 22.414130782443046 27.04562736392504 19.659590097217702 37 21.08875935295911 31.188428749837378 28.074024288691348 19.648787608512173 38 20.70113787779943 32.18601509812182 23.404531127371207 23.708315896707543 39 21.198803835728903 30.631161234658705 26.29114397885718 21.87889095075521 40 24.095326796418647 25.031198057054986 24.587309705942168 26.2861654405842 41 18.185567029677255 23.131556934516723 26.403489861394675 32.27938617441134 42 22.82603437351906 25.684466819686268 23.481134862496063 28.00836394429861 43 23.083556310790417 26.649222995774345 24.995315007615755 25.27190568581948 44 21.20481565553024 29.365203493055176 27.561704519996113 21.868276331418475 45 17.72091911331294 35.49942018816057 22.996337956328823 23.78332274219767 46 23.142265488537856 31.074908683744933 26.139862169637585 19.642963658079626 47 22.289244619538696 26.91721865035585 26.93168459175282 23.861852138352642 48 24.006887291059908 22.970224114066767 29.970095893222563 23.052792701650763 49 21.363894043554694 22.25293886401968 32.47646114227394 23.90670595015168 50 19.46237422732851 31.76255754086511 26.46196420243112 22.313104029375257 51 18.393914159667357 33.71334609905694 24.094387449574686 23.79835229170101 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1098.0 1 1564.5 2 2031.0 3 8087.5 4 14144.0 5 10628.0 6 7112.0 7 7709.0 8 8306.0 9 8878.0 10 9450.0 11 9711.0 12 9972.0 13 9794.5 14 9617.0 15 8856.5 16 8096.0 17 8033.5 18 7971.0 19 7590.0 20 7209.0 21 7479.0 22 7749.0 23 8087.5 24 8426.0 25 8923.5 26 10653.5 27 11886.0 28 13952.0 29 16018.0 30 18166.0 31 20314.0 32 23204.0 33 26094.0 34 33815.0 35 41536.0 36 44385.5 37 47235.0 38 65443.0 39 83651.0 40 115480.5 41 147310.0 42 177718.5 43 208127.0 44 215550.0 45 222973.0 46 213197.0 47 203421.0 48 190309.0 49 177197.0 50 171681.0 51 166165.0 52 151247.0 53 136329.0 54 123312.5 55 110296.0 56 103120.5 57 95945.0 58 89144.0 59 82343.0 60 72660.5 61 62978.0 62 58326.5 63 53675.0 64 45735.0 65 37795.0 66 30587.0 67 23379.0 68 19975.5 69 16572.0 70 14095.0 71 11618.0 72 9344.5 73 7071.0 74 5631.5 75 3248.0 76 2304.0 77 1648.0 78 992.0 79 836.0 80 680.0 81 468.0 82 256.0 83 167.5 84 79.0 85 73.0 86 67.0 87 43.5 88 20.0 89 17.5 90 15.0 91 8.0 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2129139.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.95595496730603 #Duplication Level Percentage of deduplicated Percentage of total 1 81.7855692601071 14.685379986099715 2 7.770180451860664 2.790420205629034 3 2.499352493218542 1.3463478244696858 4 1.1168669166205871 0.8021764823725279 5 0.6681247199145224 0.5998408691664558 6 0.4486682986054689 0.48337606590105686 7 0.3142353602547629 0.3949677184508797 8 0.23651920433739948 0.3397542545588319 9 0.19117084902190146 0.308938964048903 >10 2.1313063216548787 9.025418438518725 >50 1.0368592413514928 13.72226698602567 >100 1.7914123760892902 53.49794441870063 >500 0.00841903304938829 1.0071819729442524 >1k 7.892843483801521E-4 0.1654386148804302 >5k 5.261895655867681E-4 0.8305471982332505 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 9713 0.4561937947686835 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7868 0.3695390484134667 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06237263043887693 0.0 2 0.0 0.0 0.0 0.2704379563757932 0.0 3 0.0 0.0 0.0 0.36958601575566463 0.0 4 0.0 0.0 0.0 0.5525707809588759 0.0 5 0.0 0.0 0.0 0.929107963359837 0.0 6 0.0 0.0 0.0 1.2886899352273384 0.0 7 0.0 0.0 0.0 1.5135695696711207 0.0 8 0.0 0.0 0.0 2.115033353858062 0.0 9 0.0 0.0 0.0 2.3803988372764766 0.0 10 0.0 0.0 0.0 2.8130150262617892 0.0 11 0.0 0.0 0.0 3.1553130162004455 0.0 12 0.0 0.0 0.0 3.4833799014531226 0.0 13 0.0 0.0 0.0 3.6072327828291155 0.0 14 0.0 0.0 0.0 3.6520396272859594 0.0 15 0.0 0.0 0.0 3.72944180722818 0.0 16 4.69673421979495E-5 0.0 0.0 3.912849278511173 0.0 17 4.69673421979495E-5 0.0 0.0 4.1282415098309695 0.0 18 4.69673421979495E-5 0.0 0.0 4.4555569176084795 0.0 19 4.69673421979495E-5 0.0 0.0 4.574337326027093 0.0 20 4.69673421979495E-5 0.0 0.0 4.720170923551727 0.0 21 4.69673421979495E-5 0.0 0.0 4.88868974735797 0.0 22 4.69673421979495E-5 0.0 0.0 5.045419768272527 0.0 23 4.69673421979495E-5 0.0 0.0 5.247989915172283 0.0 24 4.69673421979495E-5 0.0 0.0 5.377713714323019 0.0 25 4.69673421979495E-5 0.0 0.0 5.484846221876543 0.0 26 4.69673421979495E-5 0.0 0.0 5.5993056348129455 0.0 27 4.69673421979495E-5 0.0 0.0 5.706719946419656 0.0 28 4.69673421979495E-5 0.0 0.0 5.834283247829287 0.0 29 4.69673421979495E-5 0.0 0.0 5.955928664121976 0.0 30 4.69673421979495E-5 0.0 0.0 6.1213946106853525 0.0 31 4.69673421979495E-5 0.0 0.0 6.278077664257712 0.0 32 4.69673421979495E-5 0.0 0.0 6.414799597395943 0.0 33 4.69673421979495E-5 0.0 0.0 6.555372852594406 0.0 34 4.69673421979495E-5 0.0 0.0 6.6952415976599 0.0 35 4.69673421979495E-5 0.0 0.0 6.888606145488858 0.0 36 4.69673421979495E-5 0.0 0.0 7.0409682035790055 0.0 37 4.69673421979495E-5 0.0 0.0 7.189525906951119 0.0 38 4.69673421979495E-5 0.0 0.0 7.3234297995574735 0.0 39 4.69673421979495E-5 0.0 0.0 7.46048050409109 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACTACG 35 1.2125747E-7 45.000004 1 TTCGATC 35 1.2125747E-7 45.000004 27 CCTTCGT 20 7.034643E-4 45.0 12 CGAAATA 20 7.034643E-4 45.0 9 GCGCAAC 20 7.034643E-4 45.0 38 TACGATC 20 7.034643E-4 45.0 35 TACGACA 25 3.891931E-5 45.0 21 GTCACGA 25 3.891931E-5 45.0 10 ACTACGC 20 7.034643E-4 45.0 39 GTCGTTA 20 7.034643E-4 45.0 22 TATTACG 20 7.034643E-4 45.0 1 CTACCGT 20 7.034643E-4 45.0 22 TTACGTC 25 3.891931E-5 45.0 35 TCGACCA 25 3.891931E-5 45.0 28 GCGAATC 30 2.1663782E-6 44.999996 9 CGAATCC 30 2.1663782E-6 44.999996 10 CGGTAAT 30 2.1663782E-6 44.999996 6 TAAGCGT 30 2.1663782E-6 44.999996 27 GTACGAC 30 2.1663782E-6 44.999996 9 CGTTTTT 7425 0.0 42.848484 1 >>END_MODULE