SRR1546317_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546317_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1779756
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7354	0.4132027086859098	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5937	0.33358505323201604	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	85	0.0	45.000004	1
GTACCAC	20	7.0343306E-4	45.0	23
TACCCGA	20	7.0343306E-4	45.0	30
TCGGCGA	20	7.0343306E-4	45.0	10
CACTCGA	25	3.891671E-5	45.0	14
CGTAAGG	180	0.0	45.0	2
CAATACG	20	7.0343306E-4	45.0	1
CGGTCTA	195	0.0	43.846157	31
CGTTTTT	6085	0.0	42.374695	1
TAACGGG	545	0.0	42.110092	3
ACGTTAG	65	0.0	41.538464	1
ACGTAAG	55	6.184564E-11	40.909092	1
TAACCGA	50	1.0822987E-9	40.5	32
ACGTATG	50	1.0822987E-9	40.5	1
TATAACG	95	0.0	40.263157	1
TAGTAAG	190	0.0	40.263157	1
CGCATCG	45	1.929402E-8	40.0	21
TAATGCG	45	1.929402E-8	40.0	1
TACGGGA	355	0.0	39.929577	4
TCTACGA	40	3.459645E-7	39.375	15