SRR1546316_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546316_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1004394
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5882	0.5856267560339866	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3664	0.364797081623347	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTTCG	20	7.03286E-4	45.000004	1
GTGTTCG	20	7.03286E-4	45.000004	1
TTGATAC	20	7.03286E-4	45.000004	42
GTGCACG	40	6.8139343E-9	45.000004	1
CTATGCG	40	6.8139343E-9	45.000004	1
AAATCCG	20	7.03286E-4	45.000004	22
TACCATA	20	7.03286E-4	45.000004	29
CGACGGA	20	7.03286E-4	45.000004	28
ACGCATC	20	7.03286E-4	45.000004	40
TTTCGTC	40	6.8139343E-9	45.000004	12
GACAACG	20	7.03286E-4	45.000004	38
CCGTGTA	40	6.8139343E-9	45.000004	37
GCACGAG	40	6.8139343E-9	45.000004	1
ATTCGAA	20	7.03286E-4	45.000004	14
CGCGACA	20	7.03286E-4	45.000004	2
TGACGAT	20	7.03286E-4	45.000004	24
CCTAACG	20	7.03286E-4	45.000004	1
TAGCCGT	40	6.8139343E-9	45.000004	44
TACGCCC	20	7.03286E-4	45.000004	34
CCTCCGT	20	7.03286E-4	45.000004	16