##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546316_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1004394 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.214826054317328 31.0 31.0 33.0 30.0 34.0 2 31.556747650822288 31.0 31.0 34.0 30.0 34.0 3 31.634114700008165 31.0 31.0 34.0 30.0 34.0 4 35.48945234638996 37.0 35.0 37.0 33.0 37.0 5 35.40469974930157 37.0 35.0 37.0 33.0 37.0 6 35.444481946327834 37.0 35.0 37.0 33.0 37.0 7 35.81867673442892 37.0 35.0 37.0 35.0 37.0 8 35.73200556753625 37.0 35.0 37.0 35.0 37.0 9 37.53341019560053 39.0 37.0 39.0 35.0 39.0 10 37.09244081505863 39.0 37.0 39.0 33.0 39.0 11 36.708022947170136 39.0 35.0 39.0 32.0 39.0 12 35.389588149670345 35.0 35.0 39.0 31.0 39.0 13 34.81549670746739 35.0 34.0 39.0 29.0 39.0 14 35.61606799722021 36.0 34.0 40.0 29.0 41.0 15 36.10470990467884 36.0 35.0 40.0 31.0 41.0 16 36.330310615157 36.0 35.0 40.0 32.0 41.0 17 36.30004062150909 36.0 35.0 40.0 32.0 41.0 18 36.25301126848627 36.0 35.0 40.0 31.0 41.0 19 36.10534610919619 36.0 35.0 40.0 31.0 41.0 20 35.92620724536387 36.0 34.0 40.0 31.0 41.0 21 35.7206355274922 35.0 34.0 40.0 31.0 41.0 22 35.58883466050175 35.0 34.0 40.0 30.0 41.0 23 35.591921098692346 35.0 34.0 40.0 31.0 41.0 24 35.55509192607682 35.0 34.0 40.0 31.0 41.0 25 35.48023086557666 35.0 34.0 40.0 30.0 41.0 26 35.36976525148498 35.0 34.0 40.0 30.0 41.0 27 35.25107079492709 35.0 34.0 40.0 30.0 41.0 28 35.25811982150431 35.0 34.0 40.0 30.0 41.0 29 35.29219310350321 35.0 34.0 40.0 30.0 41.0 30 35.22223350597475 36.0 34.0 40.0 30.0 41.0 31 34.94798754273721 35.0 34.0 40.0 29.0 41.0 32 34.716483770313246 35.0 34.0 40.0 29.0 41.0 33 34.519995141348915 35.0 34.0 40.0 27.0 41.0 34 34.332522894402 35.0 34.0 40.0 26.0 41.0 35 34.16656013476783 35.0 33.0 40.0 25.0 41.0 36 33.89889425862759 35.0 33.0 39.0 23.0 41.0 37 33.635595194714426 35.0 33.0 39.0 23.0 41.0 38 33.65773690404363 35.0 33.0 39.0 23.0 41.0 39 33.66645559411944 35.0 33.0 39.0 23.0 41.0 40 33.413680288810966 35.0 33.0 39.0 23.0 41.0 41 33.394624022047125 35.0 33.0 39.0 23.0 41.0 42 33.30450301375755 35.0 33.0 39.0 23.0 41.0 43 33.18000505777613 35.0 32.0 39.0 23.0 41.0 44 33.031755466480284 35.0 32.0 38.0 23.0 41.0 45 32.99754180132498 35.0 32.0 38.0 23.0 40.0 46 32.95871938701346 35.0 32.0 38.0 23.0 40.0 47 32.916131518109424 35.0 32.0 38.0 23.0 40.0 48 32.91816657606477 35.0 32.0 38.0 23.0 40.0 49 32.984953116008256 35.0 32.0 38.0 23.0 40.0 50 32.81504369799103 35.0 32.0 38.0 22.0 40.0 51 32.58758116834629 35.0 32.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 1.0 13 7.0 14 23.0 15 38.0 16 112.0 17 240.0 18 551.0 19 1177.0 20 2076.0 21 3372.0 22 4915.0 23 7310.0 24 10493.0 25 15293.0 26 19663.0 27 22608.0 28 24415.0 29 27002.0 30 31407.0 31 38687.0 32 49238.0 33 65192.0 34 125725.0 35 181362.0 36 61069.0 37 71968.0 38 101561.0 39 138870.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.473604979719116 23.811074140227838 29.70398070876568 15.011340171287364 2 29.698006957429058 24.98939659137749 32.149136693369336 13.16345975782412 3 26.77684255381852 24.990093529033427 33.994727168820205 14.238336748327848 4 24.78031529459555 27.747577146020387 32.20080964243115 15.271297916952909 5 22.123887637719857 32.69951831651722 31.121751025991788 14.054843019771127 6 20.433116884409902 39.21100683596278 29.5681774283797 10.787698851247619 7 85.82697626628594 5.262277552434602 7.237797119457105 1.6729490618223524 8 88.3647253966073 3.4351061436049997 6.4326350018020815 1.7675334579856112 9 84.89477237020532 4.542241391326511 8.09084881032742 2.4721374281407495 10 61.55223945981357 17.369578073943092 11.327029034422747 9.75115343182058 11 57.16521604071709 15.576755735299097 16.68140191996368 10.576626304020136 12 48.557637739771444 20.002907225650493 20.73966989050114 10.699785144076927 13 20.445761324739095 47.61089771543837 21.95612478768292 9.987216172139618 14 12.783130922725544 48.8049510451078 27.06358261797661 11.348335414190048 15 11.101519921465082 19.619491952361322 57.34582245612777 11.933165670045819 16 12.512918237265454 14.17750404721653 54.26973876785405 19.039838947663963 17 13.581821476432554 14.880515017015236 28.797663068477114 42.7400004380751 18 21.317232082230678 20.332260049343187 36.217659603701335 22.1328482647248 19 31.17601260063282 21.315539519351965 25.93812786615611 21.570320013859103 20 33.61310402093202 20.762569270624876 22.764472906050813 22.859853802392287 21 22.76188428047161 27.740209519371877 27.136561946805738 22.361344253350776 22 22.922578191426872 24.850805560367746 24.216691855984802 28.00992439222058 23 18.47731069679827 32.608617733678216 23.587257590148887 25.32681397937463 24 20.446458262395037 22.813855917100263 40.55380657391422 16.18587924659048 25 15.215343779433171 24.053011069361226 39.49197227382879 21.239672877376805 26 15.10771669285161 36.29900218440174 27.834893478057417 20.758387644689236 27 17.51464066890085 33.411091663231765 29.15031352238265 19.92395414548474 28 12.835102559354198 26.879192826719393 43.60330706873995 16.68239754518645 29 13.58271753913305 23.005115522394597 42.242685639300916 21.16948129917144 30 17.186283470430926 29.113077139051008 32.78424602297505 20.916393367543016 31 30.56838252717559 24.37519539144997 24.307592438823807 20.748829642550632 32 32.06958623806992 26.084982586514855 24.761298852840618 17.084132322574607 33 29.27795267594191 25.18682907305301 25.26727559105291 20.26794265995217 34 17.94494989018254 25.96680187257192 30.445422812163354 25.64282542508219 35 19.221739675864253 24.739594222984206 32.597665856227735 23.441000244923803 36 32.33053960895823 21.36362821761181 26.10111171512375 20.204720458306202 37 20.57051316515232 31.455882850753785 28.101521912715526 19.872082071378365 38 20.492057897597952 33.5026891837267 22.089239879967423 23.916013038707916 39 20.14279256944984 31.89853782479784 25.719189879668736 22.239479726083587 40 24.367130827145523 25.166418755986196 23.030802653142093 27.43564776372619 41 16.268715265125042 22.611445309310888 25.560785906725847 35.559053518838226 42 22.802406227038393 25.080994111872435 22.562460548350547 29.554139112738625 43 23.487197255260387 26.321543139445275 24.135747525373507 26.055512079920828 44 20.447553450140084 31.425416718936987 26.85151444552636 21.275515385396567 45 16.384506478533325 37.97145343361271 21.165996610891742 24.478043476962227 46 21.79752168969548 33.440960419914894 25.92777336383929 18.83374452655034 47 22.281395547962255 25.318649852547903 27.263305037664505 25.13664956182534 48 24.267866992435238 21.131348853139308 30.416748805747545 24.18403534867791 49 20.44566176221682 20.54452734683799 33.941461219401944 25.06834967154324 50 18.385713176303323 33.6541237801102 24.725555907343132 23.234607136243348 51 17.602454813549265 35.93729154096898 21.905746151410703 24.55450749407105 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 406.0 1 549.0 2 692.0 3 3616.5 4 6541.0 5 5177.5 6 3814.0 7 4260.5 8 4707.0 9 5130.5 10 5554.0 11 5548.5 12 5543.0 13 5401.0 14 5259.0 15 4903.0 16 4547.0 17 4180.0 18 3813.0 19 3578.5 20 3344.0 21 3275.5 22 3207.0 23 3123.5 24 3040.0 25 3206.0 26 3889.0 27 4406.0 28 5016.0 29 5626.0 30 6841.0 31 8056.0 32 10853.5 33 13651.0 34 15050.5 35 16450.0 36 16607.0 37 16764.0 38 25069.0 39 33374.0 40 57834.0 41 82294.0 42 95959.5 43 109625.0 44 114126.0 45 118627.0 46 104428.0 47 90229.0 48 85731.5 49 81234.0 50 80746.0 51 80258.0 52 76303.5 53 72349.0 54 63073.0 55 53797.0 56 48319.0 57 42841.0 58 38426.5 59 34012.0 60 29316.0 61 24620.0 62 23249.5 63 21879.0 64 18173.5 65 14468.0 66 12433.5 67 10399.0 68 8546.5 69 6694.0 70 5414.5 71 4135.0 72 3373.0 73 2611.0 74 1861.5 75 843.5 76 575.0 77 399.0 78 223.0 79 136.5 80 50.0 81 95.5 82 141.0 83 85.5 84 30.0 85 20.5 86 11.0 87 9.5 88 8.0 89 5.0 90 2.0 91 2.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1004394.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.203416833584875 #Duplication Level Percentage of deduplicated Percentage of total 1 83.0469697252345 15.117386066745475 2 6.34677871720513 2.3106611707962017 3 1.9097058622793595 1.0428951552183545 4 0.90474721025805 0.6587796238940138 5 0.5398726860276416 0.49137637704141274 6 0.3689024437675616 0.40291709728974173 7 0.3094741415790986 0.3943440758866135 8 0.21815528272472376 0.3176937236709364 9 0.19122367593284098 0.3132831853310271 >10 2.6713142651467776 12.534397176020518 >50 1.906987581527797 26.036464406053 >100 1.582580498693183 39.12591952444707 >500 0.002191939748882525 0.3016499944979705 >1k 5.479849372206312E-4 0.3654912631747896 >5k 5.479849372206312E-4 0.586741159932891 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5882 0.5856267560339866 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3664 0.364797081623347 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.060434451022208416 0.0 2 0.0 0.0 0.0 0.19464473105175858 0.0 3 0.0 0.0 0.0 0.26025643323237696 0.0 4 0.0 0.0 0.0 0.37664502177432363 0.0 5 0.0 0.0 0.0 0.588514069180023 0.0 6 0.0 0.0 0.0 0.8364247496500378 0.0 7 0.0 0.0 0.0 1.0035902245533128 0.0 8 0.0 0.0 0.0 1.4768108929364372 0.0 9 0.0 0.0 0.0 1.7000300678817277 0.0 10 0.0 0.0 0.0 2.0611433361808214 0.0 11 0.0 0.0 0.0 2.3537575891532607 0.0 12 0.0 0.0 0.0 2.621282086511867 0.0 13 0.0 0.0 0.0 2.7272166102147164 0.0 14 0.0 0.0 0.0 2.768535056959719 0.0 15 0.0 0.0 0.0 2.8278743202368792 0.0 16 0.0 0.0 0.0 2.956708224063465 0.0 17 0.0 0.0 0.0 3.1173025724964507 0.0 18 0.0 0.0 0.0 3.384926632377334 0.0 19 0.0 0.0 0.0 3.469554776312881 0.0 20 0.0 0.0 0.0 3.567723423278116 0.0 21 0.0 0.0 0.0 3.6912805134240148 0.0 22 0.0 0.0 0.0 3.8078682270105157 0.0 23 0.0 0.0 0.0 3.955121197458368 0.0 24 0.0 0.0 0.0 4.05338940694588 0.0 25 0.0 0.0 0.0 4.138515363492813 0.0 26 0.0 0.0 0.0 4.224139132651131 0.0 27 0.0 0.0 0.0 4.30179790002728 0.0 28 0.0 0.0 0.0 4.38324004324996 0.0 29 0.0 0.0 0.0 4.468863812408278 0.0 30 0.0 0.0 0.0 4.6005850293809 0.0 31 0.0 0.0 0.0 4.718964868368389 0.0 32 0.0 0.0 0.0 4.80867070094007 0.0 33 0.0 0.0 0.0 4.912713536719654 0.0 34 0.0 0.0 0.0 5.024024436625468 0.0 35 0.0 0.0 0.0 5.18023803407826 0.0 36 0.0 0.0 0.0 5.295033622263773 0.0 37 0.0 0.0 0.0 5.403158521456719 0.0 38 0.0 0.0 0.0 5.504712294179376 0.0 39 0.0 0.0 0.0 5.609651192659454 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTTCG 20 7.03286E-4 45.000004 1 GTGTTCG 20 7.03286E-4 45.000004 1 TTGATAC 20 7.03286E-4 45.000004 42 GTGCACG 40 6.8139343E-9 45.000004 1 CTATGCG 40 6.8139343E-9 45.000004 1 AAATCCG 20 7.03286E-4 45.000004 22 TACCATA 20 7.03286E-4 45.000004 29 CGACGGA 20 7.03286E-4 45.000004 28 ACGCATC 20 7.03286E-4 45.000004 40 TTTCGTC 40 6.8139343E-9 45.000004 12 GACAACG 20 7.03286E-4 45.000004 38 CCGTGTA 40 6.8139343E-9 45.000004 37 GCACGAG 40 6.8139343E-9 45.000004 1 ATTCGAA 20 7.03286E-4 45.000004 14 CGCGACA 20 7.03286E-4 45.000004 2 TGACGAT 20 7.03286E-4 45.000004 24 CCTAACG 20 7.03286E-4 45.000004 1 TAGCCGT 40 6.8139343E-9 45.000004 44 TACGCCC 20 7.03286E-4 45.000004 34 CCTCCGT 20 7.03286E-4 45.000004 16 >>END_MODULE