FastQCFastQC Report
Thu 26 May 2016
SRR1546315_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1546315_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1675932
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC64870.38706821040471806No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT54540.3254308647367554No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT18760.11193771585004643No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATGCG850.045.0000041
AATCGCC302.1660999E-645.00000440
TTTCGTA207.0342125E-445.01
TTAGACG900.045.01
TATATCG253.8915732E-545.01
GTATCCG207.0342125E-445.022
CGTAAAC207.0342125E-445.010
ATCGGAT351.2123746E-745.014
CGCGTAG207.0342125E-445.038
CAATCGT253.8915732E-545.039
TGCCGAT253.8915732E-545.034
CGTTTTT53250.042.5070421
GTTTACG850.042.3529431
CGGTCTA2500.042.331
TAGACGG2850.041.8421062
TATGGGT6550.040.1908384
ACGGGTA1850.040.1351365
TAGGGTA8750.039.857145
GTCTAAA1950.039.2307733
CGACGGT2800.038.57142628