SRR1546315_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546315_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1675932
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6487	0.38706821040471806	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5454	0.3254308647367554	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1876	0.11193771585004643	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	85	0.0	45.000004	1
AATCGCC	30	2.1660999E-6	45.000004	40
TTTCGTA	20	7.0342125E-4	45.0	1
TTAGACG	90	0.0	45.0	1
TATATCG	25	3.8915732E-5	45.0	1
GTATCCG	20	7.0342125E-4	45.0	22
CGTAAAC	20	7.0342125E-4	45.0	10
ATCGGAT	35	1.2123746E-7	45.0	14
CGCGTAG	20	7.0342125E-4	45.0	38
CAATCGT	25	3.8915732E-5	45.0	39
TGCCGAT	25	3.8915732E-5	45.0	34
CGTTTTT	5325	0.0	42.507042	1
GTTTACG	85	0.0	42.352943	1
CGGTCTA	250	0.0	42.3	31
TAGACGG	285	0.0	41.842106	2
TATGGGT	655	0.0	40.190838	4
ACGGGTA	185	0.0	40.135136	5
TAGGGTA	875	0.0	39.85714	5
GTCTAAA	195	0.0	39.23077	33
CGACGGT	280	0.0	38.571426	28