##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546315_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1675932 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.153343333739077 31.0 31.0 33.0 30.0 34.0 2 31.489642777869268 31.0 31.0 34.0 30.0 34.0 3 31.605025144218263 31.0 31.0 34.0 30.0 34.0 4 35.446115355515616 37.0 35.0 37.0 33.0 37.0 5 35.33679707768573 37.0 35.0 37.0 33.0 37.0 6 35.38154411992849 37.0 35.0 37.0 33.0 37.0 7 35.785844533071746 37.0 35.0 37.0 35.0 37.0 8 35.69754321774392 37.0 35.0 37.0 35.0 37.0 9 37.48381855588413 39.0 37.0 39.0 35.0 39.0 10 36.915967354284064 39.0 37.0 39.0 32.0 39.0 11 36.62243336841829 39.0 35.0 39.0 32.0 39.0 12 35.78185093428612 37.0 35.0 39.0 31.0 39.0 13 35.365733812589056 37.0 35.0 39.0 30.0 39.0 14 36.268757324282845 38.0 35.0 40.0 30.0 41.0 15 36.60807359725812 38.0 35.0 40.0 31.0 41.0 16 36.74413341352752 38.0 35.0 40.0 32.0 41.0 17 36.70717427676063 38.0 35.0 40.0 32.0 41.0 18 36.66451204464143 38.0 35.0 40.0 31.0 41.0 19 36.57970072771449 38.0 35.0 40.0 31.0 41.0 20 36.400751939816175 38.0 35.0 40.0 31.0 41.0 21 36.24379032084834 37.0 35.0 40.0 31.0 41.0 22 36.14302847609569 37.0 35.0 40.0 30.0 41.0 23 36.10393560120578 37.0 35.0 40.0 31.0 41.0 24 36.04419093376104 37.0 35.0 40.0 30.0 41.0 25 35.9746600697403 37.0 34.0 40.0 30.0 41.0 26 35.8610051004456 37.0 34.0 40.0 30.0 41.0 27 35.73123312879043 37.0 34.0 40.0 30.0 41.0 28 35.748393729578524 37.0 34.0 40.0 30.0 41.0 29 35.6908293415246 37.0 34.0 40.0 30.0 41.0 30 35.56930233446226 36.0 34.0 40.0 29.0 41.0 31 35.351056606115286 36.0 34.0 40.0 29.0 41.0 32 35.181757374404214 36.0 34.0 40.0 28.0 41.0 33 35.03252518598607 36.0 34.0 40.0 27.0 41.0 34 34.86222651038348 36.0 34.0 40.0 27.0 41.0 35 34.70773098192528 36.0 34.0 40.0 26.0 41.0 36 34.47984166422027 36.0 33.0 40.0 24.0 41.0 37 34.276604898050756 36.0 33.0 40.0 24.0 41.0 38 34.215117319795795 35.0 33.0 40.0 24.0 41.0 39 34.19640773014657 36.0 33.0 40.0 23.0 41.0 40 33.99902382674237 35.0 33.0 40.0 23.0 41.0 41 33.93795094311702 35.0 33.0 40.0 23.0 41.0 42 33.83173959325319 35.0 33.0 40.0 23.0 41.0 43 33.75693763231444 35.0 33.0 40.0 23.0 41.0 44 33.61110653654205 35.0 33.0 40.0 23.0 41.0 45 33.55319129893098 35.0 32.0 39.0 23.0 41.0 46 33.520683416749605 35.0 32.0 39.0 23.0 41.0 47 33.43765260165687 35.0 32.0 39.0 23.0 41.0 48 33.358386259108364 35.0 32.0 39.0 23.0 41.0 49 33.37557848409124 35.0 32.0 39.0 23.0 41.0 50 33.21393767766234 35.0 32.0 39.0 22.0 41.0 51 32.98646902141614 35.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 3.0 12 1.0 13 6.0 14 24.0 15 55.0 16 193.0 17 417.0 18 1000.0 19 1997.0 20 3553.0 21 5615.0 22 8457.0 23 12183.0 24 16784.0 25 22965.0 26 30227.0 27 34782.0 28 38403.0 29 43071.0 30 50989.0 31 61568.0 32 75718.0 33 98338.0 34 170047.0 35 234112.0 36 119189.0 37 148590.0 38 211771.0 39 285833.0 40 37.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.611943682679254 23.57345047412425 30.010167476962074 13.804438366234429 2 29.490874331416787 25.34476339135478 32.14098185367903 13.023380423549405 3 28.36809608027056 25.04546723852758 32.189193833640026 14.397242847561834 4 25.827420205593064 27.495924655654285 31.25449003897533 15.422165099777319 5 22.388796204141933 32.369690417033624 30.84719427757212 14.394319101252318 6 20.359895270213826 40.74485122308065 27.889138700138194 11.00611480656733 7 87.76507638734746 4.3787576106906485 6.139449571939673 1.7167164300222204 8 89.71139640510474 3.13550907793395 5.335240331946642 1.8178541850146663 9 85.58479699653685 4.012215292744575 7.753894549420859 2.6490931612977136 10 51.41002140898318 20.156187721220192 14.898695173789866 13.53509569600676 11 46.44860292661039 21.40146497590594 18.53315050968655 13.616781587797119 12 41.10823112154908 21.69395894344162 22.258361317762297 14.939448617247 13 22.983987417150576 38.131618705293526 22.788693097333304 16.095700780222586 14 17.805137678617033 40.65642281429079 25.58116916438137 15.957270342710803 15 15.836680724516269 22.443452359642276 45.81898310909989 15.900883806741561 16 17.110061744748595 16.73588188542256 44.480444313969784 21.673612055859067 17 17.391039731922298 18.541862080323067 27.90745686579169 36.159641321962944 18 22.342553277817952 22.71864252248898 33.94821508271219 20.99058911698088 19 30.378380507085012 24.43589596713948 23.745832169801638 21.43989135597387 20 31.850456939780376 23.275586360305788 22.710109956728555 22.163846743185285 21 23.790702725408906 27.596585064310485 27.03868653382118 21.574025676459428 22 23.474878455689133 24.02639247893113 24.235231501039422 28.263497564340316 23 21.290899630772607 30.549568836921786 22.924975476331973 25.234556055973634 24 22.055906802901312 24.117446292570342 35.71612690729695 18.110519997231393 25 19.90719193857507 24.285054524885258 33.25701758782576 22.55073594871391 26 18.888773530190964 32.22105670158455 25.832551678707727 23.057618089516758 27 19.426325173097716 31.7791533308034 27.869209490599857 20.92531200549903 28 17.67446411906927 26.910817383998875 35.91625435876873 19.498464138163126 29 17.926264311439844 24.121802077888603 35.35376136979305 22.598172240878508 30 21.23152968020182 28.520608234701644 29.931703672941385 20.316158412155147 31 29.31210812849209 25.48414852153906 23.811765632495828 21.391977717473022 32 29.93516443387918 26.51336689078077 24.654102911096633 18.897365764243418 33 28.328715007530135 26.493616686118532 24.6091130189053 20.56855528744603 34 20.63114732578649 26.905805247468273 27.803634037657854 24.659413389087387 35 21.70672795793624 24.479453820322068 30.239592059821042 23.57422616192065 36 30.734480873925673 24.90178599131707 24.606129604303757 19.7576035304535 37 21.410892566046833 31.100307172367376 27.706613394815545 19.782186866770253 38 22.658138874369605 31.23384480993262 23.338238066938278 22.769778248759494 39 20.956816863691365 29.512295248255892 26.290326815169113 23.240561072883626 40 24.138807541117423 24.38834033839082 25.501094316475847 25.971757804015915 41 18.982810758431725 23.382511939625235 26.651856996584588 30.982820305358448 42 23.327139764620522 25.602649749512512 23.650601575720255 27.419608910146714 43 23.00695970958249 26.42010535033641 25.360456152158918 25.212478787922183 44 22.630691460035372 28.761131119878375 26.534370129575663 22.073807290510594 45 18.797182701923468 33.81968958167754 23.271230574987527 24.111897141411465 46 23.35470651553882 29.967683653036044 26.01943276934864 20.658177062076504 47 23.457813324168285 27.231534453665184 25.838757181078947 23.47189504108759 48 23.92764145561992 24.04811173723039 28.918476405963965 23.10577040118573 49 21.452421697300366 23.365208134936264 31.067787953210512 24.114582214552858 50 20.847086874646465 31.02870522193025 25.534806901473328 22.58940100194996 51 20.12414584839958 31.77169479429953 24.419248513662843 23.684910843638047 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 514.0 1 863.0 2 1212.0 3 5454.0 4 9696.0 5 7310.0 6 4924.0 7 5352.5 8 5781.0 9 6132.5 10 6484.0 11 6588.0 12 6692.0 13 6402.0 14 6112.0 15 5902.0 16 5692.0 17 5294.5 18 4897.0 19 4540.0 20 4183.0 21 4086.5 22 3990.0 23 4404.0 24 4818.0 25 5067.0 26 5627.5 27 5939.0 28 8230.0 29 10521.0 30 14273.5 31 18026.0 32 19335.5 33 20645.0 34 27143.5 35 33642.0 36 35826.5 37 38011.0 38 50679.0 39 63347.0 40 83968.5 41 104590.0 42 126811.5 43 149033.0 44 151317.5 45 153602.0 46 153741.5 47 153881.0 48 150131.0 49 146381.0 50 141227.5 51 136074.0 52 126789.0 53 117504.0 54 106167.5 55 94831.0 56 90549.0 57 86267.0 58 79627.5 59 72988.0 60 68602.5 61 64217.0 62 55482.0 63 46747.0 64 40471.0 65 34195.0 66 27954.0 67 21713.0 68 16872.0 69 12031.0 70 10071.5 71 8112.0 72 6882.0 73 5652.0 74 4902.5 75 2955.0 76 1757.0 77 1190.0 78 623.0 79 575.5 80 528.0 81 435.0 82 342.0 83 247.0 84 152.0 85 101.5 86 51.0 87 47.0 88 43.0 89 26.0 90 9.0 91 7.5 92 6.0 93 5.5 94 5.0 95 3.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1675932.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.196778083451253 #Duplication Level Percentage of deduplicated Percentage of total 1 81.39542434849581 14.81134473877923 2 6.526820227499392 2.3753419854077453 3 2.1465005267605464 1.1717818122441865 4 1.0375865532050823 0.7552292900418389 5 0.6602478142208873 0.6007191477730618 6 0.5075836135002442 0.5541831824196141 7 0.3678898653157548 0.4686087166811092 8 0.30004170920958256 0.43678339186129495 9 0.25235611685769543 0.41328614308148776 >10 3.5584768995522604 16.29002624773243 >50 1.8017312209899554 24.253260986060628 >100 1.4377583385621568 36.09702676544817 >500 0.0046155965924946476 0.49361527453414356 >1k 0.0023077982962473238 0.5624262516720461 >5k 6.593709417849496E-4 0.7163660662630296 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6487 0.38706821040471806 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5454 0.3254308647367554 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1876 0.11193771585004643 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03920206786432862 0.0 2 0.0 0.0 0.0 0.15024475933391093 0.0 3 0.0 0.0 0.0 0.20734731480752203 0.0 4 0.0 0.0 0.0 0.32316346963957965 0.0 5 0.0 0.0 0.0 0.5470985696317034 0.0 6 0.0 0.0 0.0 0.7996744497986792 0.0 7 0.0 0.0 0.0 0.9552296871233439 0.0 8 0.0 0.0 0.0 1.4397958867066205 0.0 9 0.0 0.0 0.0 1.6566901282390933 0.0 10 0.0 0.0 0.0 2.010761773150701 0.0 11 0.0 0.0 0.0 2.28827899938661 0.0 12 0.0 0.0 0.0 2.533336674757687 0.0 13 0.0 0.0 0.0 2.622600439635976 0.0 14 0.0 0.0 0.0 2.653866624660189 0.0 15 0.0 0.0 0.0 2.7067327313996032 0.0 16 0.0 0.0 0.0 2.8402703689648505 0.0 17 0.0 0.0 0.0 2.9912908160951637 0.0 18 0.0 0.0 0.0 3.230023652510961 0.0 19 0.0 0.0 0.0 3.314752627194898 0.0 20 0.0 0.0 0.0 3.4184561187446745 0.0 21 0.0 0.0 0.0 3.5494876880446222 0.0 22 0.0 0.0 0.0 3.6852330524150143 0.0 23 0.0 0.0 0.0 3.853139626190084 0.0 24 0.0 0.0 0.0 3.970805498075101 0.0 25 0.0 0.0 0.0 4.057384189811997 0.0 26 0.0 0.0 0.0 4.155717535078989 0.0 27 0.0 0.0 0.0 4.242654236568071 0.0 28 0.0 0.0 0.0 4.339436206242258 0.0 29 0.0 0.0 0.0 4.44158832219923 0.0 30 0.0 0.0 0.0 4.580734779215386 0.0 31 0.0 0.0 0.0 4.712064689975488 0.0 32 0.0 0.0 0.0 4.82495709849803 0.0 33 0.0 0.0 0.0 4.943338989887418 0.0 34 0.0 0.0 0.0 5.066792686099436 0.0 35 0.0 0.0 0.0 5.230761152600463 0.0 36 0.0 0.0 0.0 5.359286653635111 0.0 37 0.0 0.0 0.0 5.494554671669256 0.0 38 0.0 0.0 0.0 5.629405011659184 0.0 39 0.0 0.0 0.0 5.807574531663576 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 85 0.0 45.000004 1 AATCGCC 30 2.1660999E-6 45.000004 40 TTTCGTA 20 7.0342125E-4 45.0 1 TTAGACG 90 0.0 45.0 1 TATATCG 25 3.8915732E-5 45.0 1 GTATCCG 20 7.0342125E-4 45.0 22 CGTAAAC 20 7.0342125E-4 45.0 10 ATCGGAT 35 1.2123746E-7 45.0 14 CGCGTAG 20 7.0342125E-4 45.0 38 CAATCGT 25 3.8915732E-5 45.0 39 TGCCGAT 25 3.8915732E-5 45.0 34 CGTTTTT 5325 0.0 42.507042 1 GTTTACG 85 0.0 42.352943 1 CGGTCTA 250 0.0 42.3 31 TAGACGG 285 0.0 41.842106 2 TATGGGT 655 0.0 40.190838 4 ACGGGTA 185 0.0 40.135136 5 TAGGGTA 875 0.0 39.85714 5 GTCTAAA 195 0.0 39.23077 33 CGACGGT 280 0.0 38.571426 28 >>END_MODULE