SRR1546314_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546314_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3465243
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17571	0.5070640067666251	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	13284	0.38334973910920533	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	4026	0.1161823283388784	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3788	0.1093141231365304	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTAATCG	40	6.8212103E-9	45.000004	9
ACTACGC	40	6.8212103E-9	45.000004	17
GAACGTA	40	6.8212103E-9	45.000004	9
CGTAAGT	20	7.0352555E-4	45.000004	35
ACCGTAC	35	1.212884E-7	45.000004	31
TACGCTA	25	3.8924387E-5	45.0	37
TATTACG	95	0.0	45.0	1
TCGACTA	30	2.1667747E-6	44.999996	2
CGGTCTA	440	0.0	43.465908	31
CGTTTTT	13495	0.0	42.74917	1
ACGTGCG	70	0.0	41.785717	1
CGACGGT	470	0.0	40.69149	28
ACAATCG	50	1.0822987E-9	40.5	1
CTTACGT	50	1.0822987E-9	40.5	24
ATGCTCG	45	1.9303116E-8	40.000004	1
GTCGCAA	80	0.0	39.375004	44
ATTGCGG	785	0.0	38.980892	2
CACGACG	505	0.0	38.76238	26
GCGCGAC	1215	0.0	38.703705	9
CTACAGT	1780	0.0	38.679775	28