##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546312_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2900176 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.248002879825226 31.0 31.0 33.0 30.0 34.0 2 31.592198887239945 31.0 31.0 34.0 30.0 34.0 3 31.69369583087371 31.0 31.0 34.0 30.0 34.0 4 35.528937209327985 37.0 35.0 37.0 33.0 37.0 5 35.44753525303292 37.0 35.0 37.0 33.0 37.0 6 35.48448128665295 37.0 35.0 37.0 33.0 37.0 7 35.872984949878905 37.0 35.0 37.0 35.0 37.0 8 35.791444036499854 37.0 35.0 37.0 35.0 37.0 9 37.567609000281365 39.0 37.0 39.0 35.0 39.0 10 37.0164159002764 39.0 37.0 39.0 33.0 39.0 11 36.77017739613044 39.0 35.0 39.0 32.0 39.0 12 35.91076817406944 37.0 35.0 39.0 32.0 39.0 13 35.50466178604333 37.0 35.0 39.0 31.0 39.0 14 36.3526813545109 38.0 35.0 40.0 31.0 41.0 15 36.69416580235131 38.0 35.0 41.0 31.0 41.0 16 36.822797995707845 38.0 35.0 41.0 32.0 41.0 17 36.78265870760947 38.0 35.0 40.0 32.0 41.0 18 36.72933021995907 38.0 35.0 40.0 32.0 41.0 19 36.626120966451694 38.0 35.0 40.0 31.0 41.0 20 36.47475808364734 38.0 35.0 40.0 31.0 41.0 21 36.30569627498469 37.0 35.0 40.0 31.0 41.0 22 36.21199437551376 37.0 35.0 40.0 31.0 41.0 23 36.17404840257971 37.0 35.0 40.0 31.0 41.0 24 36.156758417420185 37.0 35.0 40.0 31.0 41.0 25 36.09027521088375 37.0 35.0 40.0 31.0 41.0 26 35.98552743005942 37.0 35.0 40.0 31.0 41.0 27 35.86796835778242 37.0 34.0 40.0 30.0 41.0 28 35.90134771131132 37.0 35.0 40.0 30.0 41.0 29 35.866649127501226 37.0 35.0 40.0 30.0 41.0 30 35.73852655838818 36.0 35.0 40.0 30.0 41.0 31 35.51948433474382 36.0 34.0 40.0 30.0 41.0 32 35.35088491181225 36.0 34.0 40.0 29.0 41.0 33 35.17276710103111 36.0 34.0 40.0 28.0 41.0 34 34.98384270471861 36.0 34.0 40.0 27.0 41.0 35 34.80133826360883 36.0 34.0 40.0 26.0 41.0 36 34.582392585829275 36.0 33.0 40.0 25.0 41.0 37 34.38079861360138 36.0 33.0 40.0 24.0 41.0 38 34.31931889650835 35.0 33.0 40.0 24.0 41.0 39 34.2860409161375 35.0 33.0 40.0 24.0 41.0 40 34.07609331295756 35.0 33.0 40.0 23.0 41.0 41 33.981970749361416 35.0 33.0 40.0 23.0 41.0 42 33.87695057127567 35.0 33.0 40.0 23.0 41.0 43 33.80473805727652 35.0 33.0 40.0 23.0 41.0 44 33.63274504719713 35.0 33.0 40.0 23.0 41.0 45 33.61033571755645 35.0 33.0 39.0 23.0 41.0 46 33.54711472683037 35.0 33.0 39.0 23.0 41.0 47 33.47688519593294 35.0 33.0 39.0 23.0 41.0 48 33.39911819144769 35.0 33.0 39.0 23.0 41.0 49 33.41162053613298 35.0 33.0 39.0 23.0 41.0 50 33.2572374917936 35.0 32.0 39.0 23.0 41.0 51 33.033813465113845 35.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 2.0 11 4.0 12 5.0 13 10.0 14 37.0 15 88.0 16 254.0 17 659.0 18 1488.0 19 2992.0 20 5182.0 21 8504.0 22 12762.0 23 18511.0 24 26710.0 25 38217.0 26 49891.0 27 58088.0 28 62398.0 29 70489.0 30 83639.0 31 103231.0 32 130511.0 33 172575.0 34 300740.0 35 422918.0 36 210681.0 37 259046.0 38 365817.0 39 494651.0 40 72.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.8447652832104 22.903265181147628 29.993110762933007 14.258858772708965 2 30.32288385256619 25.40528574817528 31.228035815757387 13.043794583501139 3 28.490167493283163 25.028929278774804 32.841489619940305 13.639413608001721 4 26.052212003685295 27.91499550372115 30.958465968961885 15.07432652363167 5 22.578767633412593 32.10563772681382 31.178625021378014 14.136969618395574 6 20.72232857592091 40.06408576582938 27.91702986301521 11.296555795234497 7 86.98520365660568 4.623167697408709 6.60884029107199 1.782788354913633 8 88.92156889788758 3.071089478707499 6.194796453732463 1.8125451696724613 9 84.75320118503153 3.96227677216831 8.499139362576615 2.785382680223545 10 50.88822195618473 17.795437242429422 18.467499903454137 12.848840897931712 11 47.632419549710086 20.079333116335008 18.396262847496153 13.891984486458753 12 40.638188854745366 21.65844417718097 22.81564980883919 14.887717159234473 13 23.790349275354323 37.43083178400207 23.9332371552623 14.8455817853813 14 18.328198012810258 40.642395495997484 26.907746288501112 14.121660202691148 15 16.531789794826246 21.78843628800459 46.15816419417305 15.521609722996121 16 18.121314016804497 16.75063858193434 44.30417326396743 20.82387413729374 17 18.82399550923806 17.590587605717722 28.35283100060134 35.23258588444288 18 23.816382178185048 22.13113962738813 33.35232068674453 20.70015750768229 19 30.238164856201834 23.43999122811857 25.11526886644121 21.206575049238392 20 31.898857172806068 22.904747849785668 22.957503268767137 22.23889170864113 21 24.314351956570913 26.883368457638433 27.77910719901137 21.023172386779283 22 23.636220698330032 23.051876851611762 25.99462929146369 27.317273158594514 23 21.275295016578305 29.773917169164903 24.349625677889893 24.6011621363669 24 21.83595064575391 24.688329260017323 35.66259427014084 17.813125824087916 25 19.508057442031106 23.845656263619862 34.19871759507009 22.447568699278943 26 18.017768576803615 31.855377052978856 27.194349584301094 22.932504785916443 27 19.06073976200065 30.4383251223374 29.351253165325137 21.149681950336806 28 16.671574414794136 26.724584990704013 37.40324725120131 19.200593343300547 29 17.451492599069848 24.20911696393598 36.56302238208992 21.776368054904253 30 20.684779130645865 27.2594835623769 31.72876404742333 20.326973259553903 31 29.21860604321945 24.90948825174748 25.270190498783524 20.60171520624955 32 29.91777050772091 25.313049966622714 25.52665769249866 19.24252183315771 33 28.517924429413938 24.903523096529316 25.94925273500643 20.629299739050317 34 20.571579104164712 25.929012584063866 29.579446212919493 23.919962098851933 35 21.62606683180607 24.25570034370328 30.78375243433502 23.334480390155633 36 30.284920639299134 23.04273947512151 26.148585465157975 20.52375442042138 37 22.30778407931105 29.148127561913483 28.299385968299855 20.244702390475613 38 22.53656329822742 30.997980812198982 23.312205879919013 23.153250009654585 39 21.518176827889064 29.474314662282563 25.35428884315986 23.653219666668505 40 24.462101610385027 23.912410832997722 25.054100164955507 26.571387391661748 41 19.86320830184099 22.293302199590645 26.64731381819586 31.1961756803725 42 23.0065002951545 26.028937554134647 24.063780956741937 26.90078119396892 43 22.93491843253651 25.923081909511698 25.798330859920227 25.343668798031565 44 21.804814604355048 28.302178902245934 27.632805733169295 22.260200760229722 45 19.567708994212765 32.530749857939654 23.948856896960734 23.952684250886843 46 22.79275464661455 29.53624193842029 26.98891377626737 20.68208963869779 47 23.405372639453606 26.27899134397361 26.95895007751254 23.356685939060252 48 24.05971223815382 23.539640352861344 29.270292561554882 23.13035484742995 49 21.80809026762514 21.91560098421613 31.717247504979007 24.559061243179727 50 20.899386795835838 29.916942971736887 26.04924666640921 23.13442356601806 51 20.530822956951578 31.66476793132555 24.278526544595913 23.52588256712696 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1152.0 1 2012.5 2 2873.0 3 11739.5 4 20606.0 5 15290.0 6 9974.0 7 10545.0 8 11116.0 9 11973.5 10 12831.0 11 13025.0 12 13219.0 13 12941.0 14 12663.0 15 12270.5 16 11878.0 17 10771.0 18 9664.0 19 9192.5 20 8721.0 21 9193.5 22 9666.0 23 9712.5 24 9759.0 25 11340.5 26 13620.0 27 14318.0 28 16820.5 29 19323.0 30 21647.0 31 23971.0 32 31504.0 33 39037.0 34 44832.5 35 50628.0 36 53464.5 37 56301.0 38 77452.0 39 98603.0 40 134305.5 41 170008.0 42 210880.0 43 251752.0 44 266675.0 45 281598.0 46 272648.5 47 263699.0 48 256581.5 49 249464.0 50 246941.5 51 244419.0 52 222758.5 53 201098.0 54 181441.0 55 161784.0 56 150887.5 57 139991.0 58 129483.5 59 118976.0 60 111680.5 61 104385.0 62 93623.5 63 82862.0 64 74814.5 65 66767.0 66 55216.5 67 43666.0 68 35204.5 69 26743.0 70 21408.0 71 16073.0 72 14616.0 73 13159.0 74 10392.0 75 5392.0 76 3159.0 77 2329.5 78 1500.0 79 1397.5 80 1295.0 81 911.0 82 527.0 83 367.0 84 207.0 85 147.0 86 87.0 87 69.0 88 51.0 89 43.0 90 35.0 91 23.5 92 12.0 93 9.0 94 6.0 95 4.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2900176.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.423681376275674 #Duplication Level Percentage of deduplicated Percentage of total 1 81.10128819157492 13.319817164639355 2 7.77612632819987 2.554252423120463 3 2.554063698007857 1.2584138517238028 4 1.2093782536751 0.7944977240702616 5 0.7173156304427702 0.5890481680307186 6 0.49835116816759845 0.4910856479687648 7 0.35305372062672613 0.4058909271397399 8 0.2793709568633814 0.36706396650475465 9 0.22669986303548434 0.3350921686686118 >10 2.328249660176447 8.920749246886576 >50 1.0198745684291255 12.321031632144162 >100 1.9195308746342343 55.77303937291875 >500 0.012892686786820418 1.2993182481878829 >1k 0.003381688337526667 0.8225440199048936 >5k 0.0 0.0 >10k+ 4.227110421908334E-4 0.7481554380912463 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11465 0.39532083570100573 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 10088 0.3478409586176839 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04220433518517497 0.0 2 0.0 0.0 0.0 0.18426467910912994 0.0 3 0.0 0.0 0.0 0.2638115755733445 0.0 4 0.0 0.0 0.0 0.39604492968702587 0.0 5 0.0 0.0 0.0 0.6501329574480997 0.0 6 0.0 0.0 0.0 0.9309435013599174 0.0 7 0.0 0.0 0.0 1.107794837278841 0.0 8 0.0 0.0 0.0 1.55711239593735 0.0 9 0.0 0.0 0.0 1.76796166853322 0.0 10 0.0 0.0 0.0 2.1448008672577115 0.0 11 0.0 0.0 0.0 2.4467480594281175 0.0 12 0.0 0.0 0.0 2.718938436839695 0.0 13 0.0 0.0 0.0 2.8252768107866557 0.0 14 0.0 0.0 0.0 2.867239781309824 0.0 15 0.0 0.0 0.0 2.929408422109555 0.0 16 0.0 0.0 0.0 3.0871229883979456 0.0 17 0.0 0.0 0.0 3.2618020423588088 0.0 18 0.0 0.0 0.0 3.5475088408427626 0.0 19 0.0 0.0 0.0 3.6491923248795937 0.0 20 0.0 0.0 0.0 3.766564511946861 0.0 21 0.0 0.0 0.0 3.913727994438958 0.0 22 0.0 0.0 0.0 4.058995040301002 0.0 23 0.0 0.0 0.0 4.2270882870556825 0.0 24 0.0 0.0 0.0 4.349011922035077 0.0 25 0.0 0.0 0.0 4.444661289521739 0.0 26 0.0 0.0 0.0 4.551034144134701 0.0 27 0.0 0.0 0.0 4.659096551381709 0.0 28 0.0 0.0 0.0 4.7610558807465475 0.0 29 0.0 0.0 0.0 4.875842017863744 0.0 30 0.0 0.0 0.0 5.019178146429734 0.0 31 0.0 0.0 0.0 5.148687527929339 0.0 32 0.0 0.0 0.0 5.2621978804045 0.0 33 0.0 0.0 0.0 5.385293858027927 0.0 34 0.0 0.0 0.0 5.50970010095939 0.0 35 0.0 0.0 0.0 5.673000535139936 0.0 36 0.0 0.0 0.0 5.8063027898996475 0.0 37 0.0 0.0 0.0 5.9440530505734825 0.0 38 0.0 0.0 0.0 6.086009952499435 0.0 39 0.0 0.0 0.0 6.285066837322976 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAG 40 6.8212103E-9 45.0 1 CGTTACA 20 7.0350664E-4 45.0 36 GTCGTAA 20 7.0350664E-4 45.0 18 TATTACG 50 2.1827873E-11 45.0 1 ACCGTTA 25 3.8922823E-5 45.0 19 GTAACGA 25 3.8922823E-5 45.0 42 TACGTCC 20 7.0350664E-4 45.0 30 TACGATA 30 2.166651E-6 44.999996 13 CGTTTTT 10280 0.0 42.46109 1 ATAGGGT 1180 0.0 41.758472 4 CTAAACG 65 0.0 41.53846 1 GCGATAT 375 0.0 41.399998 9 AATACGG 305 0.0 41.311474 2 CGACGGT 480 0.0 41.249996 28 TCACGAC 500 0.0 40.949997 25 TAGGGCG 1615 0.0 40.68111 5 CGTAAGG 390 0.0 40.384617 2 ATAGCGG 530 0.0 40.33019 2 GCGATAA 280 0.0 40.17857 9 ACGGATC 45 1.9301297E-8 40.0 30 >>END_MODULE