SRR1546311_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546311_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1126728
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12601	1.1183710709239496	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1777	0.15771330791459873	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	90	0.0	45.000004	5
CGTTTTT	9090	0.0	43.861385	1
CGTTCGA	60	3.6379788E-12	41.249996	14
ACGTAGG	165	0.0	40.90909	2
TCGTTAG	50	1.0822987E-9	40.5	1
CGGTCTA	100	0.0	40.5	31
ATACTAT	2165	0.0	39.699768	45
AGGGCGA	1185	0.0	39.683544	6
GTATGCG	75	0.0	39.0	1
TATGGGA	1150	0.0	38.934784	4
CGTAAGG	125	0.0	37.800003	2
GTTTTTT	10905	0.0	37.71665	2
TATACTA	2290	0.0	37.532753	44
TCGACTA	30	1.1399076E-4	37.499996	23
TAGGGAT	1285	0.0	37.470814	5
TAGGGAC	1390	0.0	37.392086	5
ATGGGAC	880	0.0	37.329544	5
ATTATAC	2355	0.0	37.261147	42
GTAGGGA	1385	0.0	37.039715	4
TTACGGG	395	0.0	37.025314	3