SRR1546310_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546310_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1637136
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9849	0.6015993784267158	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3270	0.19973905649866597	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2689	0.16425025165899473	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	40	6.8175723E-9	45.0	1
TGTATCG	20	7.0341665E-4	45.0	1
CGCAATA	20	7.0341665E-4	45.0	14
CGTTTTT	7335	0.0	42.36196	1
TAACGCC	85	0.0	42.35294	12
ATAACGC	85	0.0	42.35294	11
CGACGGT	155	0.0	42.096775	28
CGTAAGG	190	0.0	40.263157	2
TCAGACG	755	0.0	39.63576	22
CACAACG	290	0.0	39.56897	12
CTAACGG	80	0.0	39.375	2
ATGGGCG	585	0.0	38.846157	5
TCTAGCG	35	6.249913E-6	38.57143	1
TGATTCG	270	0.0	38.333336	15
GGCGATA	775	0.0	38.322582	8
ACCCGCT	730	0.0	38.219177	34
CGTTCGG	530	0.0	38.207546	45
CCGCTGA	755	0.0	38.145695	36
TATAGCG	160	0.0	37.96875	1
GCGTAAG	95	0.0	37.894737	1