##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546310_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1637136 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.21859698888791 31.0 31.0 33.0 30.0 34.0 2 31.562326526324018 31.0 31.0 34.0 30.0 34.0 3 31.630975068656483 31.0 31.0 34.0 30.0 34.0 4 35.49441646876008 37.0 35.0 37.0 33.0 37.0 5 35.42173710675228 37.0 35.0 37.0 33.0 37.0 6 35.45811099383313 37.0 35.0 37.0 33.0 37.0 7 35.83919967553093 37.0 35.0 37.0 35.0 37.0 8 35.74481350358187 37.0 35.0 37.0 35.0 37.0 9 37.483613456670675 39.0 37.0 39.0 35.0 39.0 10 37.021667717281886 39.0 37.0 39.0 33.0 39.0 11 36.74007901603776 39.0 35.0 39.0 32.0 39.0 12 36.25588344523607 38.0 35.0 39.0 32.0 39.0 13 36.062159771698866 38.0 35.0 39.0 32.0 39.0 14 37.06085322172379 39.0 35.0 41.0 32.0 41.0 15 37.255897494160536 39.0 35.0 41.0 32.0 41.0 16 37.30972381036151 39.0 35.0 41.0 32.0 41.0 17 37.232352107583 39.0 35.0 41.0 32.0 41.0 18 37.147294421477504 39.0 35.0 41.0 32.0 41.0 19 37.0359188240928 38.0 35.0 41.0 32.0 41.0 20 36.89690654899776 38.0 35.0 41.0 32.0 41.0 21 36.765866733124184 38.0 35.0 40.0 31.0 41.0 22 36.65279793493027 38.0 35.0 40.0 31.0 41.0 23 36.56738780406759 38.0 35.0 40.0 31.0 41.0 24 36.5428510520812 38.0 35.0 40.0 31.0 41.0 25 36.486327953206086 38.0 35.0 40.0 31.0 41.0 26 36.39233392949639 38.0 35.0 40.0 31.0 41.0 27 36.27846800754488 38.0 35.0 40.0 30.0 41.0 28 36.2321535901721 38.0 35.0 40.0 30.0 41.0 29 36.15191163104348 38.0 35.0 40.0 30.0 41.0 30 36.015995005912764 38.0 35.0 40.0 30.0 41.0 31 35.85151019829752 38.0 35.0 40.0 30.0 41.0 32 35.66923212243821 38.0 34.0 40.0 29.0 41.0 33 35.46496870143959 38.0 34.0 40.0 27.0 41.0 34 35.23525779165567 38.0 34.0 40.0 27.0 41.0 35 35.0276940950538 38.0 34.0 40.0 25.0 41.0 36 34.83117957213084 37.0 34.0 40.0 24.0 41.0 37 34.66948500307855 37.0 33.0 40.0 24.0 41.0 38 34.56922393741265 37.0 33.0 40.0 24.0 41.0 39 34.52152844968286 37.0 33.0 40.0 24.0 41.0 40 34.30056268996589 37.0 33.0 40.0 23.0 41.0 41 34.20758874033678 37.0 33.0 40.0 23.0 41.0 42 34.09727292051485 36.0 33.0 40.0 23.0 41.0 43 34.081877131771584 36.0 33.0 40.0 23.0 41.0 44 33.88193711457081 36.0 33.0 40.0 23.0 41.0 45 33.839296796356564 36.0 33.0 40.0 23.0 41.0 46 33.73661809403739 36.0 33.0 40.0 23.0 41.0 47 33.67871575727368 35.0 33.0 40.0 22.0 41.0 48 33.5817042689184 35.0 33.0 40.0 22.0 41.0 49 33.55835739975176 35.0 33.0 40.0 22.0 41.0 50 33.43114866449702 35.0 32.0 39.0 22.0 41.0 51 33.24110153340956 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 3.0 12 10.0 13 10.0 14 23.0 15 64.0 16 161.0 17 388.0 18 891.0 19 1735.0 20 3079.0 21 4829.0 22 7330.0 23 10651.0 24 15283.0 25 21488.0 26 28755.0 27 33242.0 28 35461.0 29 39122.0 30 45315.0 31 54154.0 32 67774.0 33 86479.0 34 140305.0 35 184917.0 36 129517.0 37 164972.0 38 235329.0 39 325789.0 40 56.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.53527135192189 23.01830758104397 28.423845056244563 15.022576010789573 2 32.03741167502272 26.144071109547408 28.938463267559932 12.880053947869937 3 28.876281506240165 24.972818385277705 32.794404374468584 13.356495734013546 4 25.461965285718474 27.739723517166563 31.563474262370384 15.234836934744578 5 22.65321879184136 32.399507432491866 30.732266592390612 14.21500718327616 6 21.231162224763246 40.10051700042025 27.98203692301678 10.686283851799729 7 85.79537680437056 4.359198014092904 7.912720751360913 1.9327044301756235 8 86.75180314891371 3.723881216954486 7.474821884070719 2.049493750061082 9 81.45395373383762 5.921927072643935 9.4224303906334 3.201688802885038 10 43.47751194769402 28.85569677778755 15.134417665972771 12.532373608545655 11 36.22576255118695 23.211694080394054 24.81284389323795 15.749699475181048 12 33.65853539351648 22.09779761730241 27.95479422601421 16.288872763166896 13 23.72942748800344 31.424756403866265 27.52508038428084 17.320735723849452 14 18.709319201336967 34.75306877376101 28.612222808612113 17.92538921628991 15 17.621627036483225 23.879995308880876 40.35681824845339 18.141559406182502 16 19.515116642722415 20.651063808993268 39.36869020044761 20.46512934783671 17 19.37572687913527 21.17154591921502 30.189428367588278 29.263298834061434 18 22.78417920075058 23.602315262751535 32.11113798731443 21.50236754918345 19 27.30347387144379 24.92108169388493 26.668584650267295 21.106859784403984 20 29.643780357893295 23.46249792320247 26.108460140147184 20.78526157875705 21 24.86671846444034 26.12067659620215 27.83366806422924 21.178936875128272 22 24.24239647775139 24.18956030531367 26.689780201522662 24.87826301541228 23 22.639780690180903 28.316645654362254 26.14236080569971 22.901212849757137 24 22.266567957701746 24.267806706345716 33.72621456006099 19.739410775891557 25 20.695348462192513 26.062770594501615 31.16839407355284 22.07348686975303 26 20.382485022624877 29.987123855318064 27.40419855161697 22.226192570440084 27 20.50581014649974 28.834562308812462 28.991177275437103 21.66845026925069 28 19.06341318009011 27.209529324381116 33.73959157944117 19.987465916087608 29 19.707342578747276 24.88699778149158 33.31256535803989 22.09309428172125 30 21.66362476910898 26.352850343526747 31.201012011219593 20.782512876144683 31 26.389988369933835 26.54813039356535 26.041880454647632 21.020000781853188 32 26.970758690786838 25.737263122917092 27.15822020895026 20.133757977345805 33 25.725718571945155 26.77621162811153 26.013843688001486 21.48422611194183 34 21.25186911777641 26.460538403651256 29.266352948075173 23.021239530497162 35 22.078984274977767 25.72913917964054 29.021535168733692 23.170341376648 36 26.002971042112566 27.164756012939673 25.98843345940716 20.843839485540602 37 22.88704176073338 29.32444219661653 27.499914484807615 20.288601557842476 38 22.36552125174695 29.935142834804196 25.961007515563768 21.738328397885088 39 22.932975635500043 28.898332209419376 26.4191856999052 21.74950645517538 40 23.68660880953079 26.312047380303166 27.351545626020073 22.649798184145972 41 20.355608819303956 25.625665796854996 27.1207767711418 26.897948612699253 42 22.44920397572346 26.84621192130648 25.177077530516705 25.52750657245336 43 22.894615963487457 26.899964327948318 26.250720770907243 23.954698937656982 44 22.16217834071207 28.514552242452673 27.22547179953284 22.09779761730241 45 20.66694520186472 30.3938707596681 25.361912510628315 23.57727152783886 46 22.02633134938087 29.740840101249987 26.624971902151074 21.607856647218068 47 22.729144066222965 27.554399878812756 27.747847460443115 21.968608594521164 48 23.08238289305226 25.22154543055678 28.824300485726294 22.87177119066467 49 22.080450249704363 25.087591989914092 29.57946071676391 23.252497043617634 50 20.680627632646278 28.92740737483019 27.815160133305966 22.57680485921756 51 20.955131400201328 29.138629900020526 26.196296459182378 23.709942240595772 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 586.0 1 1298.0 2 2010.0 3 10240.0 4 18470.0 5 13576.5 6 8683.0 7 8582.0 8 8481.0 9 8687.0 10 8893.0 11 8642.5 12 8392.0 13 8137.5 14 7883.0 15 7619.5 16 7356.0 17 7007.0 18 6658.0 19 6385.0 20 6112.0 21 6070.5 22 6029.0 23 6596.5 24 7164.0 25 8407.0 26 11292.0 27 12934.0 28 15153.0 29 17372.0 30 21756.5 31 26141.0 32 30448.0 33 34755.0 34 40440.5 35 46126.0 36 49454.0 37 52782.0 38 58679.0 39 64576.0 40 79467.5 41 94359.0 42 105814.5 43 117270.0 44 119048.5 45 120827.0 46 123640.0 47 126453.0 48 123707.5 49 120962.0 50 117819.5 51 114677.0 52 108699.5 53 102722.0 54 97465.0 55 92208.0 56 87099.0 57 81990.0 58 79153.0 59 76316.0 60 69848.0 61 63380.0 62 56580.0 63 49780.0 64 43650.0 65 37520.0 66 32012.0 67 26504.0 68 21951.0 69 17398.0 70 15009.5 71 12621.0 72 10900.5 73 9180.0 74 7335.0 75 4252.5 76 3015.0 77 2338.5 78 1662.0 79 1250.0 80 838.0 81 636.0 82 434.0 83 347.0 84 260.0 85 177.5 86 95.0 87 76.5 88 58.0 89 49.5 90 41.0 91 29.5 92 18.0 93 10.5 94 3.0 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1637136.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.01248010461408 #Duplication Level Percentage of deduplicated Percentage of total 1 78.37392692811875 17.252045072256912 2 5.871140865775512 2.5847674299854027 3 2.1324788447547904 1.408234444310257 4 1.3280889061088696 1.1693812249152067 5 0.9204907903825652 1.013114260488835 6 0.7746046773016948 1.023058202882674 7 0.5977514196250304 0.9210593862400562 8 0.5152524628013211 0.9073587669013989 9 0.47500630774613806 0.941046020894525 >10 6.9593084073233795 37.76618864927171 >50 1.8404033573535559 27.46729512193969 >100 0.2079236975025015 6.1957089519048205 >500 0.002508462834848214 0.31676432423364237 >1k 8.36154278282738E-4 0.42971476407755776 >5k 2.787180927609127E-4 0.6042633796972968 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9849 0.6015993784267158 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3270 0.19973905649866597 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2689 0.16425025165899473 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.029991399614937304 0.0 2 0.0 0.0 0.0 0.11556767427996208 0.0 3 0.0 0.0 0.0 0.17084713792867545 0.0 4 0.0 0.0 0.0 0.255812589790952 0.0 5 0.0 0.0 0.0 0.4276981264842994 0.0 6 0.0 0.0 0.0 0.6663465955180266 0.0 7 0.0 0.0 0.0 0.8126997390564986 0.0 8 0.0 0.0 0.0 1.2026490163309584 0.0 9 0.0 0.0 0.0 1.4197965227079485 0.0 10 0.0 0.0 0.0 1.768454178516629 0.0 11 0.0 0.0 0.0 2.0319631356222088 0.0 12 0.0 0.0 0.0 2.2625487436596594 0.0 13 0.0 0.0 0.0 2.357776018608106 0.0 14 0.0 0.0 0.0 2.4022439186481757 0.0 15 0.0 0.0 0.0 2.4628375406807987 0.0 16 0.0 0.0 0.0 2.5843301961474183 0.0 17 0.0 0.0 0.0 2.727018402869401 0.0 18 0.0 0.0 0.0 2.923459016233227 6.10822802748214E-5 19 0.0 0.0 0.0 3.009890442822099 6.10822802748214E-5 20 0.0 0.0 0.0 3.1120810977218754 6.10822802748214E-5 21 0.0 0.0 0.0 3.2348564810742664 6.10822802748214E-5 22 0.0 0.0 0.0 3.3675882761114533 6.10822802748214E-5 23 0.0 0.0 0.0 3.5220042806462017 6.10822802748214E-5 24 0.0 0.0 0.0 3.6365946384417667 6.10822802748214E-5 25 0.0 0.0 0.0 3.731882995670488 6.10822802748214E-5 26 0.0 0.0 0.0 3.825949707293713 6.10822802748214E-5 27 0.0 0.0 0.0 3.927834950792115 6.10822802748214E-5 28 0.0 0.0 0.0 4.031064004456563 6.10822802748214E-5 29 0.0 0.0 0.0 4.140340203868218 6.10822802748214E-5 30 0.0 0.0 0.0 4.2909080247456535 6.10822802748214E-5 31 0.0 0.0 0.0 4.413683408098044 6.10822802748214E-5 32 0.0 0.0 0.0 4.534137664799992 6.10822802748214E-5 33 0.0 0.0 0.0 4.6512934783671 6.10822802748214E-5 34 0.0 0.0 0.0 4.771136912266299 6.10822802748214E-5 35 0.0 0.0 0.0 4.926163739603796 6.10822802748214E-5 36 0.0 0.0 0.0 5.060789085329502 6.10822802748214E-5 37 0.0 0.0 0.0 5.19315438668504 6.10822802748214E-5 38 0.0 0.0 0.0 5.322160162625463 6.10822802748214E-5 39 0.0 0.0 0.0 5.45489195766265 6.10822802748214E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATACG 40 6.8175723E-9 45.0 1 TGTATCG 20 7.0341665E-4 45.0 1 CGCAATA 20 7.0341665E-4 45.0 14 CGTTTTT 7335 0.0 42.36196 1 TAACGCC 85 0.0 42.35294 12 ATAACGC 85 0.0 42.35294 11 CGACGGT 155 0.0 42.096775 28 CGTAAGG 190 0.0 40.263157 2 TCAGACG 755 0.0 39.63576 22 CACAACG 290 0.0 39.56897 12 CTAACGG 80 0.0 39.375 2 ATGGGCG 585 0.0 38.846157 5 TCTAGCG 35 6.249913E-6 38.57143 1 TGATTCG 270 0.0 38.333336 15 GGCGATA 775 0.0 38.322582 8 ACCCGCT 730 0.0 38.219177 34 CGTTCGG 530 0.0 38.207546 45 CCGCTGA 755 0.0 38.145695 36 TATAGCG 160 0.0 37.96875 1 GCGTAAG 95 0.0 37.894737 1 >>END_MODULE